TCONS_00029989 (transcript) - C. hemisphaerica

Overview
NameTCONS_00029989
Unique NameTCONS_00029989
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1400

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00029989 ID=TCONS_00029989|Name=TCONS_00029989|organism=Clytia hemisphaerica|type=transcript|length=1400bp
CGTGGACAGTATTATAAATTTTTGCATGTTGTATGTTAGATAGGACAGTC
CCAACTGAGAGAAAATGAACGTACGAATTGTCGAAGGAAATACTTAGAAC
GTCGGCTTatggaaatataatatataGGCTTTCGTGCTTTTCTTAAAATg
agtatataaaataaaataaatctctTTTCCTATAAAATTACACAAAATAT
AAACATGCTAAAATCTCTTAAAAGCAAGGCACTGGAGGAgcccaaaaaaa
taaaataatatctcTTTTCCTATATACACAAACAATTGTGACAAATATTT
CCAAGTGGTGACTATAAGAATTAATGAACTACtgtaatcggattaaattt
cgcgaatttttgccattttcgcgaaattaaatctcgcgaaatttaatccg
attaaagtataagAATTAATGAACTAAATCCCAATAGCCGCAAAGAAAAG
gctaaattttgaaagtttgtcaAACTATAAACTGGTCTTCACATCTCTTC
GTACATTAAGACTGGACTGGGATGGGctgtaaaactaaaaaaatgctaaa
aatgaaaaaataaaatgtaacaaATGTAAatatagtttaaaaaaaaagtt
tcgttGGGGGTCCCAAATCGAAAGAAAGCTAGCCACAAAACCTACCATGA
AGGAAGTTTTTTTGTTCATCGTTCATGTTAAAGGTGAAATCGACGTCTCG
GGGCCGAAAAGAAGGATTTCTTTGGGTAACACAATCTGTAAAAATATGAT
AATGAATGTTACCAAAAGTTGGATTCCAAGTAGCGTTTTCTTTATCATAG
TAGTGGTAACGTTCTTTGTGACGAANAATTGCTGTTTCTTTTTACAATGT
TCtgtaatatttttctttccatGGATCATACATAGGAACGCTAGGCTACC
AGGAAATGTTTCAAGCATCGAGTTTCTCAGAGCTGTCTCACAGTCTGAAG
CATAAGCCTGTAAGAAGTGCTTCAATCCAGGCGTAGTGGATGACATTTTC
TGAAATAAAGTGTCGTACGTGGCTTGATCTTTTAACATGCACAACATCAA
AGGGCCCAACATAACAGGACAAGTCTTTGTCCCTTTGATGAACAACGTTG
TGTTGTTGTAAATGGTCACCAACAAAAAGAAGGGTCCGAGTCTAAAGGTG
ATGTCTGTAAACAAAAGAGATTTGAATCCCTCCTGATCATTGCAGCAGAA
GTTAACAATTTCTTgagtctaggtaatgttctagttggtgagttggggag
ttggggagttgctagtttcgagttggggagttcgtaaaaccttacggcga
ccgaaaattttctaatttaaactaatgtagcccaaaagtacaaatttcaa
attagccagtaccaaacatattattgactttaagatcatgaaaatggtaa
Run BLAST on NCBI

transcript from alignment at sc0000781:89345..90858+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00029989 ID=TCONS_00029989|Name=TCONS_00029989|organism=Clytia hemisphaerica|type=transcript|length=1514bp|location=Sequence derived from alignment at sc0000781:89345..90858+ (Clytia hemisphaerica)
CGTGGACAGTATTATAAATTTTTGCATGTTGTATGTTAGATAGGACAGTC
CCAACTGAGAGAAAATGAACGTACGAATTGTCGAAGGAAATACTTAGAAC
GTCGGCTTatggaaatataatatataGGCTTTCGTGCTTTTCTTAAAATg
agtatataaaataaaataaatctctTTTCCTATAAAATTACACAAAATAT
AAACATGCTAAAATCTCTTAAAAGCAAGGCACTGGAGGAgcccaaaaaaa
taaaataatatctcTTTTCCTATATACACAAACAATTGTGACAAATATTT
CCAAGTGGTGACTATAAGAATTAATGAACTACtgtaatcggattaaattt
cgcgaatttttgccattttcgcgaaattaaatctcgcgaaatttaatccg
attaaagtataagAATTAATGAACTAAATCCCAATAGCCGCAAAGAAAAG
gctaaattttgaaagtttgtcaAACTATAAACTGGTCTTCACATCTCTTC
GTACATTAAGACTGGACTGGGATGGGctgtaaaactaaaaaaatgctaaa
aatgaaaaaataaaatgtaacaaATGTAAatatagtttaaaaaaaaagtt
tcgttGGGGGTCCCAAATCGAAAGAAAGCTAGCCACAAAACCTACCATGA
AGGAAGTTTTTTTGTTCATCGTTCATGTTAAAGGTGAAATCGACGTCTCG
GGGCCGAAAAGAAGGATTTCTTTGGGTAACACAATCTGTAAAAATATGAT
AATGAATGTTACCAAAAGTTGGATTCCAAGTAGCGTTTTCTTTATCATAG
TAGTGGTAACGTTCTTTGTGACGAANAATTGCTGTTTCTTTTTACAATGT
TCtgtaatatttttctttccatGGATCATACATAGGAACGCTAGGCTACC
AGGAAATGTTTCAAGCATCGAGTTTCTCAGAGCTGTCTCACAGTCTGAAG
CATAAGCCTGTAAGAAGTGCTTCAATCCAGGCGTAGTGGATGACATTTTC
TGAAATAAAGTGTCGTACGTGGCTTGATCTTTTAACATGCACAACATCAA
AGGGCCCAACATAACAGGACAAGTCTTTGTCCCTTTGATGAACAACGTTG
TGTTGTTGTAAATGGTCANTAAAGTGTCGTACGTGGCTTGATCTTTTAAC
ATGCACAACATCAAAGGGCCCAACATAACAGGACAAGTCTTTGTCCCTTT
GATGAACAACGTTGTGTTGTTGTACATGGTCACCAACAAAAAGAAGGGTC
CGAGTCTAAAGGTGATGTCTGTAAACAAAAGAGATTTGAATCCCTCCTGA
TCATTGCAGCAGAAGTTAACAATTTCTTgagtctaggtaatgttctagtt
ggtgagttggggagttggggagttgctagtttcgagttggggagttcgta
aaaccttacggcgaccgaaaattttctaatttaaactaatgtagcccaaa
agtacaaatttcaaattagccagtaccaaacatattattgactttaagat
catgaaaatggtaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_017142XLOC_017142Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00029989-exon-sc0000781-1491911889:89345..90455TCONS_00029989-exon-sc0000781-1491911889:89345..90455Clytia hemisphaericaexon
TCONS_00029989-exon-sc0000781-1510915933:89345..90455TCONS_00029989-exon-sc0000781-1510915933:89345..90455Clytia hemisphaericaexon
TCONS_00029989-exon-sc0000781-1575043694:89345..90455TCONS_00029989-exon-sc0000781-1575043694:89345..90455Clytia hemisphaericaexon
TCONS_00029989-exon-sc0000781-1491911889:90570..90858TCONS_00029989-exon-sc0000781-1491911889:90570..90858Clytia hemisphaericaexon
TCONS_00029989-exon-sc0000781-1510915933:90570..90858TCONS_00029989-exon-sc0000781-1510915933:90570..90858Clytia hemisphaericaexon
TCONS_00029989-exon-sc0000781-1575043694:90570..90858TCONS_00029989-exon-sc0000781-1575043694:90570..90858Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000781supercontigsc0000781:89345..90858 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.905948	0.953166	0.660474	0.216675	1.58219	1.01111	1.9356	1.40853	1.47343	1.68624	2.14476	2.36574	2.11418	1.81164	1.20519	1.53715	1.27805	0.991602	2.93609	3.20981	3.14001	3.51136	1.15886	1.6569	0.101759	0	5.67551	4.37869	2.88637	3.10706
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00029989 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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