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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00030472 ID=TCONS_00030472|Name=TCONS_00030472|organism=Clytia hemisphaerica|type=transcript|length=1839bp
TGAAGAGAGTCATGAGATGTCCGAACGAAAGAAGAGTACCGTCTTACCTA
CATCAGAATCAAGTAAAGGAaaggaacaaaacaaaaaaagaaaagatgtt
CAGTTGGATGGTCGTAAACTCCATTATTGTTTGTATTGTGGAGTGTCAAG
ATTTCGGGTCACTGATCATATTAAATCAATGCATGCAGACAAAGAAAGGG
TTGCCAAAATACTTAAAATGAATCCTGTTGCCGATAAGAAAAAGATCAAT
CAGGAGTTGAAGGAGCTGCGCCAGGAGGGAGATATGGTTGCCAACACAAA
ATCATTGAAAGAGGGGAAAGGCTTTAAAGTTGTTGTGCGAAATTCAAAAG
CGGTTACCAAGTCACTAGAGAACTATACACCCTGCTTCAAATGCAACGCG
ACAATAAAAAGCAATCTTTTAAACAGGCACATGAAAACATGCCGTGCAAA
TGATGACCGTCAACTCAATTTAAAATCTTCAAGAATTCTTCTTGAGCATA
AGCTTTCGGAAGAGTCTCAATTCCACGATGTTAAATCCTACGTTATTCAA
CGTATGAAACAGGATGAACTGACAAACACTGTAAAAAATGATGTAGGGCT
TCTTATGTATGGCCAAAAATTATATGATAAAGGCGGGGACGAGTCATACA
ATGAGATATCGAGCAAACTTCGTGCCATGGCAAGGTTAATTCTCCGGTAC
CGGGAAATGATGAATTCACATTTTGAATCACTCGATCTTATTGATTCTTC
CTGTTGGGATGACGTTGTTCGGGCTGTCAAGGTTGTTGTGTCACATGAAA
AACAGCATGTTGGTCTTCCAAGTCTCCTACTCAATTTGGGCAGGTCTTTA
GCAAGCCTTGGTGGCATTAAGAATGCTCTCGGAATTCGCAAAAAAGATCT
AAGTATGCAAGAGGAAGCCAAAAATTTCTGTTGTGTCACATGAAAAACAG
CATGTTGGTCTTCCAAGTCTCCTACTCAATTTGAGCAGGTCTTTAGCAAC
CCTTGGTGGCATTAAGAATGCTCTCGGAATTCGCAAAAAAGATCTAAGTA
TGCAAGAGGAAGCCAAAAATTTATTGGTGCTCCATGGCGAGGAATGGTCG
ACCTACTCCAAACATGCCATGGACACTTTGAATGACAAGAAAGATAACAA
GCCTGAAGAACTGCCACTTCCCTCGGATTTGGATAAGTTAAAGGAATTCC
TTTTCAAGGAGATTGAGGAGCTCACTGTTGGTGATGAAGAGATGTTACGT
TCCAAATGGTCGAGACTCCAACGAGCAACTGTGGCCCGTCTTATCACCTT
TAACGCGCGCAGAGGATCAGAGCCTGCTAAGTTGAAACTCATACAATATG
AAAACGCCGATGATTGGAAGCGACCGGAGGACCTCAAGAAGTTGAAAGAT
CCTGTAGAGAAGATGTTAGCCAAGCGGCTCAAGGTGATTTATGTAAAAGG
TAAAAAGAAACGAAAGGTGCCAATCCTAATCACGCCCGAAGTTGATGGTG
CCATAAAGGTCCTCATTGATAATAGAAAATCAGTGGGTGTGAGCaaccaa
aataaacatttatttCCTCGTCcctcaagaaaatcaaaaagtcaTGTCAG
ACCTTGGGAAGTCGTCCATGAATGCGCCATTGATGCTGAGTTGGTAAAGC
CAAATCTGATAACATCGACTAAAATACGAAAACATTTAGCCACAGTACTT
CAGCTTATGGTGTTGAACACAGCCGAACTGAAATGGGTAACCGATCACCT
TGGTCATTCAGAGGCTGTTCACAATGCCTGGTATAGACAGGAAGCCTCGA
CTGTTGAATTAACCAAAGTGGCACGTATTCTCATTGCTA Run BLAST on NCBI transcript from alignment at sc0000823:29969..36514+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00030472 ID=TCONS_00030472|Name=TCONS_00030472|organism=Clytia hemisphaerica|type=transcript|length=6546bp|location=Sequence derived from alignment at sc0000823:29969..36514+ (Clytia hemisphaerica)
TGAAGAGAGTCATGAGATGTCCGAACGAAAGAAGAGTACCGTCTTACCTA
CATCAGAATCAAGTAAAGGTAGTTAATAGTTTTTGACCATCCCCGGACTT
TAGGGTATCTTTTTAATGGAAATTATCGAGATTTGCGTTTTagtaaattt
tatttgattagaTTTTCAATTTACAAACCTtccaaagtagtaaaaattac
TGCTTCTAATATTGATGTCTGGAAGTTTCCTTGTGGTCTTCTTTGGCTCA
TTAAGTACTAAAATTGCCGGTAATTTTTCTCCATTTATTAGATTGCATTT
CCTTGAAGTTTTCTCTtgggtttttttggttttgtcaAGTACTGACATTT
ACTGGTAATTTTTCTCCATTTATTAGATTGCATTTCCTTGAAGTTTTCTA
TtgggtttttttgtttttcaagtaCTGACATTTAGCGGCAATTTTGACCC
ATATATCCAATTGCATTTCCTTGAAGTTTTCACTTCGTTTTTTATCGGTT
CGTCAAGTACTGACATTTACTGGCAATTTTGATCCATATCAGATTGCAtt
tccttgaagttttcttttgtttttttatcggttCGTCAAGTACTGGCATT
TACTGGCAATTTTGATCCATATCAGATTGcattaccttgaagttttcttt
tgtttttttttatcggTTCGTCAAGTACTGACATTTACTGGCAATTTTGA
TGCATATCAGATTGCAtttccttgaagttttcttttggttttttaTCGGT
TTGTCAAGTACTTACATTTACTGGCAATTTTGATCCATATCAGATTGcat
taccttgaagttttcttttgttttttttcgtttgTTAAGTACTGGCATTT
ACTGGCAATTTTGATCCATATCAGATTGCATTTCCttgtttgaagttttc
ttttgtttttttatcggttCGTCAAGTACTGACATTTACTGGCAATTTTG
ATCCATATCAGATTGCATTTCCTTaacatagcttcagccaggtttctagc
tccccccaacaaagtaaggtccccccaacaatttacctccccccaaaaaa
ttgcattatgctaggtcccctaacacttggggaaaaaacaaaaacattgt
ccTTTCGCCCCCgtagagagaagtcaataaaaaatatacagtactgataa
atgaaaactaaattttacttccatcaatatttatgtttacataTCTTTTg
cttgatttaatagtaagataagagatcttttcaaattagctgaacagccc
ccagagtctcagtcagatcatccaggctccccccaacaatctaggtcccc
ccaaatattttggtaattttagcccccaaggctctttaaaggccaaaata
tttcttgccccccccccaaaaaaaagtaAGAGGGGGCTGAAGCTAtgctt
gaagttttcttttgtttttttttcgtttgttaAGTACTGACATTTACTGG
CAATTTTGATCCATATCAGATTGCAtttccttgaagttttctttttcttt
tttttttttcgtttgttaAGTACTGACATTTACTGGCAATTTCTATTCAT
ATCAGATTGAATGTCTTTGAAGTcttattttggtttttttagTTTGTTGA
GTACTGACATTTAGCGGTACTTTTGATCTATATATTATTTGATTGCATTT
ACTTGAAGTTTTCTCTTGggctttttgattattttgtgtACTGTACATTT
AGCGGCAATTTTGATCCATATTAGATTGCATTGCcttaaaagtttctttt
ttttttttcgtttgttaAGTACTAGCATTTACTGGCAATTTTGATCCATA
TCAGATTGCAtttccttgaagttttcttttggttttttaTCGGTTCGTCA
AGTACTGACATTTACTGGCAATTTTGATCCATATCAGATTGCATTTCCtt
gtttgaagttttcttttgtttttttttgttttgttaagtACTGACATTTA
CTGGCAATTTTGATCCATATCAGATTGCATTTCCttgtttgaagttttct
tttgttttttttcttttgttaagtaCTGACATTTACTGGCAATTTTGATC
CATATCAGATTGCAtttccttgaagttttcttttgttttttttcgtttgT
CAAGTACTGACATTTACTGGCAATTTCTATTCATATCAGATTGAAATACT
TTGAAgtcttattttgttttttttagtttgttgAGTACTTGCATTTACTG
GCATATTTGATCCATATCAGATTGcattaccttgaagttttcttttgttt
tttatcgGTTCGCCAAGTACTTGCATTTACTAGCAATTTTGATCCATATC
AGATTGCAtttccttgaagttttcttttgtttttttatcggttCGTCAAG
TACTGACATTTACTGGCAATTTTGATCCATATCAGATTGCATTTCCTTGA
NttttcttttgtttttttttcgtttgttaAGTACTGACATTTACTGGCAA
TTTTGATCCATATCAGATTGCAtttccttgaagttttcttttgttttttt
tcgtttgTTAAATACTGACATTTACTGGCAATTTCTATTCATATCAGATT
GAATGTCTTTGAAGTCTTATTTtggttttgttattttgttgaGTACTGAC
ATTTAGCGGCATTTTTGATCTATATATTATTCAATTGCATTTACTTGAAG
TTTTCTCTTGggctttttgattattttgtgtACTGTACATTTAGCGGCAA
TTTTGATCCATATCAGATTGCATTTCCTTgacatagcttcagccaggttt
ctagctccccccaacaaagtaaggtccccccaacaatttacctcccccca
aaaaattgcattatgctaggtcccctaacacttggggaaaaaacaaaaac
attgtccTTCCGCCCCCGTAGAGAGAAGTCATAGAAAATATATGCNGCTT
TTTTAGTTTGTTAAGTACTGACATTTGCTGGCAATTTTGATCCATATATC
AGATTGTATTTCTATGAAGTTTTCTCTTgggctttttttgtttttcatgt
cCCGACATTTGCTGGCAATCTCCCCTTTCTTAGTTTGCATTTCTTTGAAG
TTTTCTCTGGGTCTTTTTTGTTTCTCAAGTACTGACATTTGCTGTTAGTT
TACTCTTTCCTAGATTGCATTCCCTTAAAATTTTCTCTTGgccttttttt
gtttgttaagtACTGACATTTACTGGCAATTTTGATCCATATCAGATTGT
ATTTCTTTGAAGTTTTCACTTCGTTTTTTTCGGTTTGTCAAGTACTGACA
GGGCAATTTAGTCTTTATTTGATTGATTgtcctggaaatttttctcttgg
gcttttttttatcaaaattaccGGTCAGTTAAGTACTGACATTTGCCGTC
ACTTTTGATCCATATTAGATTGATTGGTCAAAATTTATTCACATAATTTT
TTAGTTTGGGAAAGgacaattttttatataaaaacaaatttgctgAACTT
TTCCTAGGGGGTATTTATTTTGCTTATAAATGTTCTTTTattttatgtta
ttttactCAATATTGactgaattatttttcttttccgaaGTTTCTTTGTT
TGCCCTTGGCTGCTTTTTCTCGAGATATAAGAATGGATGGTGGTGACAAT
TAGTGACTGGAAAGTATCATTAAAAGTTACATTGTCATCAAGTCAATGAT
GGAAAGTAACGTTGTCATCAAGTCAATGATtgggattttttgtttttcaa
gtaCTGACATTTAGCGGCAATTTTGACCCATATATCAGATTGCAtttcct
tgaagttttcttttggttttttaTCGGTTCGTCAAGTACTGGCATTTACT
GGCAATTTTGATCCAATATCAGATTGCAtttccttgaagttttcttttgg
ttttttaTCGGTTTGTTAAGTACTGGCATTTACTGGCAATTTTGATCCAT
ATCAGATTGCATTTCCTTGAAGTTTTCACTTCGTTTTTTTCGGTTTGTCA
AGTACTGACATTTACTGGCAATTTTGATCCAATATCAGATTGCAtttcct
tgaagttttcttttgtttttttatcggttCGTCAAGTACTGACATTTACT
GGCAATTTTGATCCATTGTAGATTGAATGGTGAAATTTACTCACAGAATT
TTTTGCTTGTTAAAGGACAATTTTAAGTCTTTATCTAAGTCTGCTCTTTA
TCAAATTTGCTGTGATGTTCCTTGGTATATTATTGCTTTTTGTTTAGGAT
CAATGTTATTTTACTCAATATTGATTGAAACTTCCTTGTTTGCCTTAGGC
TACTTAGAACGTTTTTTAGAATTCTCAAAATGATcctcttttttcataag
aacgaATGGTGATGACTATTAGTGACCGGAAAGTATCGTTATATCAATCC
TATTTGTGTTCTGTTTAGCTGAAGAGAGTCATGAGATGTCCGAACGAAAG
AAGAGTACCGTCTTACCTACATCAGAATCAAGTAAAGGTAGTTGATACTT
CTTACCATCCCCGGACTTTAGGGTATCTTGTTAATTGAAGTAGAGTAGCT
CTTGAGAGTGGAAACACTGTACTGTATGCGTCACTGATCTTTATATAACT
TACCGGATCGGCTTTTTTACACCTCGATTTCTGTGTCCAGCACCGTTCAA
AAATTGGCATTCCTGTTGTTGGTAAGGATAAGATATACGTGAttgtcaaa
ataatttttgtatgagTATACACTGTAATTCAGCAATTTAGAATACTATA
GAGAATctaatttgacattttttcgcAGATATTTCTTCATAAACTGATAT
CTTTACACTATTGCTTTCACTTCAGGAaaggaacaaaacaaaaaaagaaa
agatgttCAGTTGGATGGTCGTAAACTCCATTATTGTTTGTATTGTGGAG
TGTCAAGATTTCGGGTCACTGATCATATTAAATCAATGCATGCAGACAAA
GAAAGGGTTGCCAAAATACTTAAAATGAATCCTGTTGCCGATAAGAAAAA
GATCAATCAGGAGTTGAAGGAGCTGCGCCAGGAGGGAGATATGGTTGCCA
ACACAAAATCATTGAAAGAGGGGAAAGGCTTTAAAGTTGTTGTGCGAAAT
TCAAAAGCGGTTACCAAGTCACTAGAGAACTATACACCCTGCTTCAAATG
CAACGCGACAATAAAAAGCAATCTTTTAAACAGGCACATGAAAACATGCC
GTGCAAATGATGACCGTCAACTCAATTTAAAATCTTCAAGAATTCTTCTT
GAGCATAAGCTTTCGGAAGAGTCTCAATTCCACGATGTTAAATCCTACGT
TATTCAACGTATGAAACAGGATGAACTGACAAACACTGTAAAAAATGATG
TAGGGCTTCTTATGTATGGCCAAAAATTATATGATAAAGGCGGGGACGAG
TCATACAATGAGATATCGAGCAAACTTCGTGCCATGGCAAGGTTAATTCT
CCGGTACCGGGAAATGATGAATTCACATTTTGAATCACTCGATCTTATTG
ATTCTTCCTGTTGGGATGACGTTGTTCGGGCTGTCAAGGTTGTTGTGTCA
CATGAAAAACAGCATGTTGGTCTTCCAAGTCTCCTACTCAATTTGGGCAG
GTCTTTAGCAAGCCTTGGTGGCATTAAGAATGCTCTCGGAATTCGCAAAA
AAGATCTAAGTATGCAAGAGGAAGCCAAAAATTTCTGTTGTGTCACATGA
AAAACAGCATGTTGGTCTTCCAAGTCTCCTACTCAATTTGAGCAGGTCTT
TAGCAACCCTTGGTGGCATTAAGAATGCTCTCGGAATTCGCAAAAAAGAT
CTAAGTATGCAAGAGGAAGCCAAAAATTTATTGGTGCTCCATGGCGAGGA
ATGGTCGACCTACTCCAAACATGCCATGGACACTTTGAATGACAAGAAAG
ATAACAAGCCTGAAGAACTGCCACTTCCCTCGGATTTGGATAAGTTAAAG
GAATTCCTTTTCAAGGAGATTGAGGAGCTCACTGTTGGTGATGAAGAGAT
GTTACGTTCCAAATGGTCGAGACTCCAACGAGCAACTGTGGCCCGTCTTA
TCACCTTTAACGCGCGCAGAGGATCAGAGCCTGCTAAGTTGAAACTCATA
CAATATGAAAACGCCGATGATTGGAAGCGACCGGAGGACCTCAAGAAGTT
GAAAGATCCTGTAGAGAAGATGTTAGCCAAGCGGCTCAAGGTGATTTATG
TAAAAGGTAAAAAGAAACGAAAGGTGCCAATCCTAATCACGCCCGAAGTT
GATGGTGCCATAAAGGTCCTCATTGATAATAGAAAATCAGTGGGTGTGAG
CaaccaaaataaacatttatttCCTCGTCcctcaagaaaatcaaaaagtc
aTGTCAGACCTTGGGAAGTCGTCCATGAATGCGCCATTGATGCTGAGTTG
GTAAAGCCAAATCTGATAACATCGACTAAAATACGAAAACATTTAGCCAC
AGTACTTCAGCTTATGGTGTTGAACACAGCCGAACTGAAATGGGTAACCG
ATCACCTTGGTCATTCAGAGGCTGTTCACAATGCCTGGTATAGACAGGAA
GCCTCGACTGTTGAATTAACCAAAGTGGCACGTATTCTCATTGCTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00030472-exon-sc0000823-1491911889:29969..30036 | TCONS_00030472-exon-sc0000823-1491911889:29969..30036 | Clytia hemisphaerica | exon |
| TCONS_00030472-exon-sc0000823-1510915933:29969..30036 | TCONS_00030472-exon-sc0000823-1510915933:29969..30036 | Clytia hemisphaerica | exon |
| TCONS_00030472-exon-sc0000823-1575043694:29969..30036 | TCONS_00030472-exon-sc0000823-1575043694:29969..30036 | Clytia hemisphaerica | exon |
| TCONS_00030472-exon-sc0000823-1491911889:34744..36514 | TCONS_00030472-exon-sc0000823-1491911889:34744..36514 | Clytia hemisphaerica | exon |
| TCONS_00030472-exon-sc0000823-1510915933:34744..36514 | TCONS_00030472-exon-sc0000823-1510915933:34744..36514 | Clytia hemisphaerica | exon |
| TCONS_00030472-exon-sc0000823-1575043694:34744..36514 | TCONS_00030472-exon-sc0000823-1575043694:34744..36514 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000823 | supercontig | sc0000823:29969..36514 + |
Blast
The following BLAST results are available for this feature:
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