transcript:BL95114_evm1 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL95114_evm1
Unique Nametranscript:BL95114_evm1
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL95114_evm1

>transcript:BL95114_evm1-protein ID=transcript:BL95114_evm1-protein|Name=transcript:BL95114_evm1|organism=Branchiostoma lanceolatum|type=polypeptide|length=196bp
MFGCIVAGRLVQTDPQQMSEAQFVFNLSDADSINHIVVFLTGATPFPDGL
CGAVYFGYPNPDGMAWQYLGYIANEKPSAIFKVAKVKPGDETSKNMFGQL
MPGQQKMAQIGISVEPAAQIAQQTPPSHITPSTVSTFQEFTRKMLESFHN
YASSFALTQAQMVPEPNKSFVPLNVLQQCTLYNAIFPPTALTLDFI
Run BLAST on NCBI

mRNA from alignment at Sc0000005:2181823..2184173-

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL95114_evm1 ID=transcript:BL95114_evm1|Name=transcript:BL95114_evm1|organism=Branchiostoma lanceolatum|type=mRNA|length=2351bp|location=Sequence derived from alignment at Sc0000005:2181823..2184173- (Branchiostoma lanceolatum)
ATGTTTGGATGCATCGTAGCAGGAAGATTGGTAGGTATCAGGAGTGACTG
TATGGTGTTCGATGACAGGCCAGATTCAGCTGTGCTGATAGTGCTTCTTG
TGATAGGGGGAGGGGGGCATGTTACAATTTACCTTTACATTGTATATTTA
TCTATTTAGTACAGCAGAGTAGATTTGCATAGGGTATATTTACATATATA
ATAGAGTCAATCAGTTAATCAATCGATCTTCAGTGGGAATCAACTAGCTG
CTGATGCATGTCGACTGTAGACAACTCTCTCCAGAATGTTCTATTTTGGG
CACAGGACCCCCTCAGTTGGCTTGGTCCTCCCTCCCAACTGTTAACATAC
AAGAGCCCTCTAAAACTTTTAAGGATGGCTTGCTTCAAGATTTTCAATAA
GACTACATCACTACAACTACCTGACCGTAAACTTTTTTCTTCTCTACTCT
TGAGTAATGGGAATACTATATATCTAACAGTCTAAAGGAGGTTATAGGGA
CATCGTTAACGTTAATCTAAGCATCCAGACTTCCAGGCCATCTGTTCAGT
CGGTCATTGCAAATTTATGTTTACCTTCACAGTCTTTTCTCCATTTCTTC
TTTTGCTTCTGTTCCAAACAAATAAGGTCAATGACCTGGACCAGACCGCT
GTCACCATGGTTACTGGTAAAGCAGCAGACACCCTGTGGTGTTCGATTAC
ATAATGTAGCAAGTGTCAGGACAGAGCTGGAGGGGCTGGTCACCATATAT
ATGAAATTATGAATGTGTATTATTTTATCATTCCCAGGTGCAAACGGACC
CACAACAGATGAGTGAAGCACAATTTGTCTTCAATCTGTCTGATGCAGAC
AGCATAAACCACATCGTCGTCTTCTTGACTGGAGCCACTCCTTTCCCAGA
TGGACTTTGTGGTGCGGTGTACTTTGGCTACCCCAACCCCGATGGTATGG
CGTGGCAATATCTTGGATACATCGCAAATGAGAAACCAAGTGCAATTTTT
AAGGTTGCAAAGGTCAAGCCAGGTAAACAATTTCAATAAGATTATGTACG
TTTCTTCAAAGTGATTTGTGTATTTTTCATAAAATTTGTAAAAATTTCAT
AAAATTGGTGGGAATGCTTAGGCCCCCTGATATATTGTACAGAAAATGCT
ATCTATACCTTAGCCAGTTTTCTATATCAAACCTACTTGGTATCAGTGAT
AACATTATACAAATAAAGATATTGATGATAATAATGATAAGGTTATATTG
CTTCGTATAGATTTACATCAGGACAGGTTCATTTTCCTTTTTCATCAGAA
ATCCAGAAAAACTGCAGCTGAACGTATTTATGAAATGATCAAAAGTTTGC
TTTTAAGTTCATAGAATTTTACAGTCCTGTAAAAATGACTGAAGAATTTC
ACACACTGAATCTTCCCTCTTGCTATCTTGATGCAGGGGACGAGACTTCC
AAGAACATGTTTGGCCAACTCATGCCAGGGCAGCAGAAAATGGCTCAAAT
TGGCATTTCTGTGGAACCAGCGGCCCAGATCGCCCAGCAGACGCCCCCCT
CCCACATCACTCCATCCACAGTTAGCACCTTCCAAGAGTTCACCAGAAAG
ATGTTGGAGAGCTTCCACAACTACGCCTCGTCGTTCGCGTTGACACAAGC
TCAAATGGTGCCCGAGCCAAACAAATCCTTTGTGCCCTTGAATGTCCTTC
AACAGTGGTTTGATAACTTTCAGAGGAGACTAGTGCAAAATCCAAACTTT
TGGAAAACATGAGCAGATTTTTAACCGATTTATTACCAATTGTGAAACGC
AGCTCTCATAATTCTCATACCACATTTAAAAAAAGGGTGCTAATATAAAG
GTCTTTTCAAAACTGTCTTGTACATCTGGATATCTAAAGTGTACATATCT
TGGGGATTACTGTTGCTGCATTAATAGATCTCTTTGAATTCACCATTTTG
TAATGCGGTGGTGTAACTGATGGCATTTATGACTAGTCTAATGTTTTTTT
TGGGAAATAAAAGTATTTTTTGCCTAAAAAAGTGTATGTGCCTTTTCTTG
TAGTATGCTACGGTGTGTTCCCAATTTGCGTTAGTATAGTACGATGTACA
TATCTGCATGACCATCTATAGTTTACTGATCTTTGAGGCTTGAGCCCTGT
AACATGAGTTTTAGAGAAGAGAAAAAGAATTTTTTCTTAAAGTACAGAAA
AAACAACTTTCAGACGCTTTTGCCCCCTCCCCCCAAGAAAAGAAAGATGT
AGATTACCTTCACAACATGAGTCTTTATCTGTCATCTCAACATCAGCACT
CTGTACAATGCCATCTTCCCGCCCACGGCCCTAACTCTAGACTTCATTTA
A

Coding sequence (CDS) from alignment at Sc0000005:2181823..2184173-

>transcript:BL95114_evm1 ID=transcript:BL95114_evm1|Name=transcript:BL95114_evm1|organism=Branchiostoma lanceolatum|type=CDS|length=2364bp|location=Sequence derived from alignment at Sc0000005:2181823..2184173- (Branchiostoma lanceolatum)
ATGTTTGGATGCATCGTAGCAGGAAGATTGGTGCAAACGGACCCACAACA
GATGAGTGAAGCACAATTTGTCTTCAATCTGTCTGATGCAGACAGCATAA
ACCACATCGTCGTCTTCTTGACTGGAGCCACTCCTTTCCCAGATGGACTT
TGTGGTGCGGTGTACTTTGGCTACCCCAACCCCGATGGTATGGCGTGGCA
ATATCTTGGATACATCGCAAATGAGAAACCAAGTGCAATTTTTAAGGTTG
CAAAGGTCAAGCCAGGGGACGAGACTTCCAAGAACATGTTTGGCCAACTC
ATGCCAGGGCAGCAGAAAATGGCTCAAATTGGCATTTCTGTGGAACCAGC
GGCCCAGATCGCCCAGCAGACGCCCCCCTCCCACATCACTCCATCCACAG
TTAGCACCTTCCAAGAGTTCACCAGAAAGATGTTGGAGAGCTTCCACAAC
TACGCCTCGTCGTTCGCGTTGACACAAGCTCAAATGGTGCCCGAGCCAAA
CAAATCCTTTGTGCCCTTGAATGTCCTTCAACAGTGCACTCTGTACAATG
CCATCTTCCCGCCCACGGCCCTAACTCTAGACTTCATTTAAATGTTTGGA
TGCATCGTAGCAGGAAGATTGGTGCAAACGGACCCACAACAGATGAGTGA
AGCACAATTTGTCTTCAATCTGTCTGATGCAGACAGCATAAACCACATCG
TCGTCTTCTTGACTGGAGCCACTCCTTTCCCAGATGGACTTTGTGGTGCG
GTGTACTTTGGCTACCCCAACCCCGATGGTATGGCGTGGCAATATCTTGG
ATACATCGCAAATGAGAAACCAAGTGCAATTTTTAAGGTTGCAAAGGTCA
AGCCAGGGGACGAGACTTCCAAGAACATGTTTGGCCAACTCATGCCAGGG
CAGCAGAAAATGGCTCAAATTGGCATTTCTGTGGAACCAGCGGCCCAGAT
CGCCCAGCAGACGCCCCCCTCCCACATCACTCCATCCACAGTTAGCACCT
TCCAAGAGTTCACCAGAAAGATGTTGGAGAGCTTCCACAACTACGCCTCG
TCGTTCGCGTTGACACAAGCTCAAATGGTGCCCGAGCCAAACAAATCCTT
TGTGCCCTTGAATGTCCTTCAACAGTGCACTCTGTACAATGCCATCTTCC
CGCCCACGGCCCTAACTCTAGACTTCATTTAAATGTTTGGATGCATCGTA
GCAGGAAGATTGGTGCAAACGGACCCACAACAGATGAGTGAAGCACAATT
TGTCTTCAATCTGTCTGATGCAGACAGCATAAACCACATCGTCGTCTTCT
TGACTGGAGCCACTCCTTTCCCAGATGGACTTTGTGGTGCGGTGTACTTT
GGCTACCCCAACCCCGATGGTATGGCGTGGCAATATCTTGGATACATCGC
AAATGAGAAACCAAGTGCAATTTTTAAGGTTGCAAAGGTCAAGCCAGGGG
ACGAGACTTCCAAGAACATGTTTGGCCAACTCATGCCAGGGCAGCAGAAA
ATGGCTCAAATTGGCATTTCTGTGGAACCAGCGGCCCAGATCGCCCAGCA
GACGCCCCCCTCCCACATCACTCCATCCACAGTTAGCACCTTCCAAGAGT
TCACCAGAAAGATGTTGGAGAGCTTCCACAACTACGCCTCGTCGTTCGCG
TTGACACAAGCTCAAATGGTGCCCGAGCCAAACAAATCCTTTGTGCCCTT
GAATGTCCTTCAACAGTGCACTCTGTACAATGCCATCTTCCCGCCCACGG
CCCTAACTCTAGACTTCATTTAAATGTTTGGATGCATCGTAGCAGGAAGA
TTGGTGCAAACGGACCCACAACAGATGAGTGAAGCACAATTTGTCTTCAA
TCTGTCTGATGCAGACAGCATAAACCACATCGTCGTCTTCTTGACTGGAG
CCACTCCTTTCCCAGATGGACTTTGTGGTGCGGTGTACTTTGGCTACCCC
AACCCCGATGGTATGGCGTGGCAATATCTTGGATACATCGCAAATGAGAA
ACCAAGTGCAATTTTTAAGGTTGCAAAGGTCAAGCCAGGGGACGAGACTT
CCAAGAACATGTTTGGCCAACTCATGCCAGGGCAGCAGAAAATGGCTCAA
ATTGGCATTTCTGTGGAACCAGCGGCCCAGATCGCCCAGCAGACGCCCCC
CTCCCACATCACTCCATCCACAGTTAGCACCTTCCAAGAGTTCACCAGAA
AGATGTTGGAGAGCTTCCACAACTACGCCTCGTCGTTCGCGTTGACACAA
GCTCAAATGGTGCCCGAGCCAAACAAATCCTTTGTGCCCTTGAATGTCCT
TCAACAGTGCACTCTGTACAATGCCATCTTCCCGCCCACGGCCCTAACTC
TAGACTTCATTTAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL95114gene:BL95114Branchiostoma lanceolatumgene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL95114_evm1-E1BL95114_evm1-E1-1564476830-59645Branchiostoma lanceolatumexon
BL95114_evm1-E2BL95114_evm1-E2-1564476830-59643Branchiostoma lanceolatumexon
BL95114_evm1-E3BL95114_evm1-E3-1564476830-59641Branchiostoma lanceolatumexon
BL95114_evm1-E4BL95114_evm1-E4-1564476830-59639Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL95114_evm1transcript:BL95114_evm1-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000005genomeSc0000005:2181823..2184173 -
Properties
Property NameValue
Transcript idBL95114_evm1
Biotypeprotein_coding