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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96532_cuf3 >transcript:BL96532_cuf3-protein ID=transcript:BL96532_cuf3-protein|Name=transcript:BL96532_cuf3|organism=Branchiostoma lanceolatum|type=polypeptide|length=241bp
MLQQILKTMYVDPEILSELSEEQKQLLFFKMREEQVRRYKDWEQKEDKKP
KKPPKPGKRRIQFLKGADGEPWTWVMGEGRGDATIEEIMDREDQLRAQRL
AEKEAEELKRRNEEVLRAKLQAEKEKLEREKRELAEAARRREEEAAYASR
KEAKMAAERARKAWAEQERQAKELEKKKEAELKCNNCQEPVSQRKEQMER
RRSFEEVHKKAEKRAKELYMSLKEARETAIKEAEQEQAHKX Run BLAST on NCBI mRNA from alignment at Sc0000006:7411530..7420866+ Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96532_cuf3 ID=transcript:BL96532_cuf3|Name=transcript:BL96532_cuf3|organism=Branchiostoma lanceolatum|type=mRNA|length=9337bp|location=Sequence derived from alignment at Sc0000006:7411530..7420866+ (Branchiostoma lanceolatum)
GTCATCCCGACTTCCGCATTTTGGGTGTGTGTCGGACGGTAACGTAACGT
AACTCTGACTCACGGCTGTAGAAGGTCGCGGTTTGTCGCCCTTTCTCGGC
ACTCAGGCATTTTTACCGACAGAGGTCAGACCAGCGGGCCCTGGCGTCCC
CCCGACATGTTGTTTAGCGCGGCGGTGTGAGAATCTGAGCGCCTTTTTCT
GCCGTACTGTTGGGGTACACTCGAGGCGACAGAGCCGTGCTTCCGAGAGA
GTTTCCGGTGGTGCAACTCCTGTTTCCTTTGTTGTGGTGCGCCTCTGGCA
GGTGAGTTCACCTGGACAAGGTGTAAAACTGCACGTGAGAACCTGCCTCT
AGTCACTCTATACGCTTCATCTGTACCAAATAGAGAAGATTTTACCCCCC
TCCCCCTAGGACACTTCTCAGTGTATACATCAGATATGCAGTCTTAGTAG
AACGTTTGAAGATGAGTTTACCTGGACCAATGAGGTTTTATGATATACTC
GCCTGAACAAGGTGTAAAACTGTTATCAGTTAAACTGCATGTGAGTATAT
ACTTCTAGTCACTCAGTATGCTTCATCTGTACCAAAAAGAGATTTGACCC
CCTCCCCCTAAGACACTTGTATAGTGTAACGTTATATGTACTGATCAGAT
ATATGTCTTCCTAGAACGTTGGAAGATTAATTTAACGTTGCAACTATATT
TCAACATTCTGACTCGGTGATAACCGCCGTGTAGTTTCTTCATGATCAGC
ACAAAACTGCCCAAACGTCAGGAGGATGATATCAGGGTCCCTACAGTTTT
TGACAGCATGTTCTAACTAGTGAAATGATTCAGTCTATACTATAGTACTT
ATTGTTACAGTAGTATTATATCATACTCATAATTTTACCCGGAGATGTTG
AAGGAGGAAGAAGCACAGACAACATGCCTCCACGACAGTCTATAGTCCTC
CAACACAGTTTATAATCCTCCACGACAGTCTATAGTCCTCCAATACAGTT
TATAATCCTCCACGACAGTCTATAGTCCTCCAATACAGTTTATAATCCTC
CACGACAGTCTATAGTCCTCCAACACAGTTTATAATCCTCCACGACAGTC
TATAGTCCTCCAATACAGTTTATAATCCTCCACGACAGTCTATAGTCCTC
CAATACAGTTTATAATCCTCCACGACAGTCTATAGTCCTCCAACACAGTT
TATAATCCTCCACGACAGTCTATAGTCCTCCAATACAGTTTATAATCCTC
CACGACAGTCTATAGTCCTCCAATACAGTTTATAATCCTCCACGACAGTC
TATAGTCCTCCAACACAGTTTATAATCCTCCACGACAGTCTATAGTCCTC
CAATACAGTTTATAATCCTCCACGACAGTCTATAGTCCTCCAATACAGTT
TATAATCCTCCACGACAGTCTATAGTCCTCCAACACAGTTTATAATCCTC
CACGACAGTCTATAGTCCTCCAATACAGTTTATAATCCTCCACGACAGTC
TATAGTCCTCCAATACAGTTTATAATCCTCCACGACAGTCTATAGTCCTC
CAACACAGTTTATAATCCTCCACGACAGTCTATAGTCCTCCAATACAGTT
TATAATCCTCCACGACAGTCTATAGTCCTCCAATACAGTTTATAATCCTC
CACGACAGTCTATAGTCCTCCAACACAGTTTATAATCCTCCACGACAGTC
TATAGTCCTCCAATACAGTTTATAATCCTCCACGACAGTCTATAGTCCTC
CAATACAGTTTATAATCCTCCACGACAGTCTATAGTCCTCCAACACAGTT
TATAATCCTCCACGACAGTCTATAGTCCTCCAATACAGTTTATAATCCTC
CACGACAGTCTATAGTCCTCCAATACAGTTTATAATCATCCAGGACTTGG
TAGTTGGATAATTTTCCCTGGTACTTTTACATACACGTATGTTACGTCCC
CACGGCGCTGAACGCATGAGACGAGTAGTACAGTCTCCTGTCTCCCGGGT
ATTGAACCCGGGCCACCAGCGCACCGTCCCAATGCACTAACCACTAGGCT
AAAAGGTCCGGACAGTTAGACTGGTCAGTGAGTGGCGCTTGAACCACAGT
CTGTTACAGTGCAGCTGGTAACGCAAGCCGCACCCCGGGAACCAGACTGG
GATTGGGCCGTTCAGCCGCACCCCGGGAACCAGACTGGGATTGGGCCGTT
CAGCCGCACCCCGGGAACCAGACTGGGATTGGGCCGTTCAGCCGCACCCC
GGGAACCAGACTGGGATTGGGCCGTTCAGCCGCACCCCGGGAACCAGACT
GGGATTGGGCCGTTCAGCCGCACCCCGGGAACCAGACTGGGATTGGGCCG
TTCAGCCGCACCCCGGGAACCAGACTGGGATTGGGCCGTTCAGCCGCACC
CCGGGAACCAGACTGGGATTGGGCCGTTCAGCCGCACCCCGGGAACCAGA
CTGGGATTGGGCCGTTCAGCCGCACCCCGGGAACCAGACTGGGATTGGGC
CGTTCAGCCGCACCCCGGGAACCAGACTGGGATTGGGCCGTTCAGCCGCA
CCCCGGGAACCAGACTGGGATTGGGCCGTTCAGCCGCACCCCGGGAACCA
GACTGGGATTGGGCCGTTCAGCCGCACCCCGGGAACCAGACTGGGATTGG
GCCGTTCAGCCGCACCCCGGGAACCAGACTGGGATTGGGCCGTTCAGCCG
CACCCCGGGAACCAGACTGGGATTGGGCCGTTCAGCCGCACCCCGGGAAC
CAGACTGGGATTGGGCCGTTCAGCCGCACCCCGGGAACCAGACTGGGATT
GGGCCGTTCAGCCGCACCCCGGGAACCAGACTGGGATTGGGCCGTTCAGC
CGCACCCCGGGAACCAGACTGGGATTGGGCCGTTCAGCCGCACCCCGGGA
ACCAGACTGGGATTGGGCCGTTCAGCCGCACCCCGGGAACCAGACTGGGA
TTGGGCCGTTCAGCCGCACCCCGGGAACCAGACTGGGATTGGGCCGTTCA
GCCGCACCCCGGGAACCAGACTGGGATTGGGCCGTTCAGCCGCACCCCGG
GAACCAGACTGGGATTGGGCCGTTCAGCCGCACCCCGGGAACCAGACTGG
GATTGGGTCCTTCAGCGGCTGATTCAGACGGCAGGCTGACTGCCGGTCGT
CCAAGACGCTGGCTGAACAGCCCGAACGTAGTCTGGTTCTCAGGGTAGCA
ACCCCGCTACTTGGCCATCTGGATCAATTTTCGTGGGCCAGAGTTTGATC
CTAAGGTTGGACACCCAGCTCGGACATTACATTCGTCATTTCGGATGGTG
ACGTTAAGCCCCATGAATTAGGGAGCTTCAGGCATGAGTGTCAAGCATGA
AACCTCTGCACCTAAAAGAACCCAACACACTTATCGAGAAGAGTAGGGTG
ACCTGGTATGCTTGGCTACAAACGCGAGCCGTAGCGAAGACACATTGAAC
TACTAGCACTTGAACCTGGTTACGGTTGTTGAAAATTGGAATCTAACTCT
AAGGGTTCTCGTTTGAATCCCTAGCAGGCCCCAATGTTGTGCCCTTGGGA
AAGGCCATTCACACCAGTCCTGTTTCCTCACTCTACTCAGGTGAAAATGA
GTACCTAGCTTCAGATAGGACGCTAAATGCAGGTCCCGTCTTTGAGGAGG
GCCACACCTCAAGCACGTAAAAGAACCCACCACACTTTTCAAAAAGAGTA
GGGGTCCTTCCCGGTGTGAGTGGATCAAATAAACCTGTCCGGATATGTAG
CAGTCCAGTCTGTAAATGCTCTCTTGTACCTACTGTACAAAATTGGTTGT
GTTGCTGTTCGACTTTTAGCTGTTTACAGGCAAACAAAACAACAAACAAA
AAATTACAGAAGGTCTGCTACGTACAATGTGTGGAAAATTTATAGCGTTT
TAATTAGCAGAAAATTGATAATCGTGCCCTCTAATGGCTGATCACCCCTG
ACGCCAGGCCACGTGCCCAGCCGGTAGTTCGTCAGGCGTGTGTGAAACAT
GGACTGTGTTTGGCTAATCAGGCGGGATAATTACACCACAACACACAATG
GAACCTGTTGTAGCGACAGCCAAGGACGTAATACAAATAATGTTATGTAT
TTCATAATACATTAGAATATTTAGGTACAATGTAGTACTATACATACATG
TTTGTAATGTATTTCCTGTTCATATTCCCCAAATGACAGAATATGTAATT
TTCTGTAAGTATAATAACTTCATGTTCACAAAAGCAAAGAAAATGAAGAA
AAAGCAGCACAACAAATGAAATAAAAGTTTCTAATCTACCGTAGCTGCTT
ATTGAACGCAGCCACAATGCTGGGCAGGAATTTTCTCCCTGGAATGTGAC
AAATTCTGAGACAAATATTCAAGTCAAGTACTTCTACAATAATTATTCAT
GTTTTAAATACTGCATGCTCTATCTGTCACATAACTTAGCAAGTAACAAT
TTCATACGTTTCCTTGAAAAAACATTTTGTTCTGAAAGTAGCTGAATCAA
AACCCCACTTGTAGAGAGAGGCAATAGATATAAGGTTTGTGATTAGGTCT
TGCTGATTCTACTTTTGTTGCGCACCCAAAATTCTTCATGTGCACCTGAA
TTTTTAGGATTCAAAAAAATGAATTTTTCAGCCCTCCATTATGTCTGTGT
AAGTTTCAGGGGTTCTCATGTAGTGTGTTAAGTGTGTTCATTGTTGTAAC
AGTTCGCCACAAGTGAAGGAAGTTAAGTTCTGCAGTTGTAAAACATGTTA
CATAAGCACGTGTGCCAGATCAGGTTACGCACATGTATCAGATCGAGTTA
CTTCCTCATGGCGTTACAGCCGGCCACAGGGAGCAGGAAATAGAAGGGTT
TATTCTGTCCTTACAGGACAGACTAACTCAAGCAGGACGTGATGATGAAC
TTTAAGGTCTCATTCCTGTGTTACTCCGAGTTGTGAGTTTTAGTAAGAAG
TGTGTGATTCCAGCTGAGGGTGCTTACATATATTCACAGTAACCACTTAA
CTTTCTCCCTGCATTTGGCACCTAATCTGTATTTGTTACAGGGTTAGGCA
GCAGGGAGAAGGTTAAAGACACTTCGGGTAGCAGTAGTTCCCTAAGTCTG
GTCTTGTGCACTGCGGTAGCTTTTATCTATCAATGTACAAAATTTGTGTG
TTCCTTCAGTCTGTTTTAATACTTGTTGTCTAGAACCCAGACACCATGCT
AGGTGGTAAAATATTTCACCTGTCCCTAGTCTAGAACCCAGGCACCATGT
TGCAGCTGGTTTTAAGATTTACCCTGTATCTCTAGTCTAGAGCCCAGGCA
CCATGTTGCAGCTGGTTTTAAGATTTACCCTGTATCTCTAGTCTAGAGCC
CAGGCACCATGTTGCAGCTGGTATAAGATGTCCATTCCTCTCTGTGAATA
GAAAAAGTTCACTGACTGTCCCTAGTCTAGAACCCAGGCACTATTTGCAG
CCGGTGAAAGGTTTTCCTCTGTTGATTTGTTTCTAGCCTAGAACCCAGGC
AGCATGTTGCAGCTGGTATAAGATGTTTCTCTCCCTCCTTAGCCTAGAAC
CCAGGCAGCATGTTGCAGCTGGTATAAGATGCTTCTCTCTCTCCCTAGCC
TAGAACCCAGGCAGCATGTTGCAGCTGGTATAAGATGCTTCTCTCTCTCC
CTAGCCTAGAACCCAGGCAGCATGTTTCAGCTGGTATAAGATGCTTCTCT
CTCTCCCTAGCCTAGAACCCAGGCAGCATGTTTCAGCTGGTATAAGATGC
TTCTCTCTCTCCCTAGCCTAGAACGCAGGCGCCATGCTGCAGCAGATCCT
GAAGACGATGTACGTGGACCCTGAGATCCTGTCAGAGCTGTCGGAGGAGC
AGAAGCAGCTGCTGTTCTTTAAGATGCGAGAGGAGCAGGTGCGCAGGTAC
AAGGACTGGGAACAGAAGGAGGACAAGAAGCCCAAGAAACCTCCCAAACC
AGGTGGGTGGTCTACAAGGTGTTCTGAACCGGTTCTGTAGTTTAAACCAG
GCGGGTGTTCTGAACCTGTTCTGAAGTTTAAACCAGGTGACTGTGTGTTC
TACAAGGTGTTCTGAACTGTAGTTTAAACCATGTTGGTGAAGGGTTAGAG
TGTTGTTTATCTATTTATTAATTTGTTTCTTTGCTTGTTTGTTTGTTTAT
GACAGGGAAGAGAAGGATCCAGTTCCTGAAAGGCGCAGACGGCGAGCCGT
GGACGTGGGTGATGGGCGAGGGCCGTGGGGATGCGACGATCGAGGAGATC
ATGGACCGGGAGGACCAGCTGAGAGCGCAGCGGCTGGCTGAGAAGGAGGC
CGAGGAGCTGAAGTCAGTCTTGGAGTCTTTTTCCTGGAAAATAAGTGTTA
ACCCCTTTTCCTGGAAAATTAGTGTTAAACCCTTTTCCTGGAAAAGTAGT
GTTAAACCCTTTTCCTGGAAAAGTAGTGTTAAACCCTTTTCCTGGAAAAT
AAGTGTTAACCCCTTTTCCTGGTAAATTAGTGTTAAACCCTTTTCCTGGA
AAAGTAGTGTTAAACCCTTTTCCTGGAAAAGTAGTGTTAAACCCTTTTCC
TGGAAAATAAGTGTTAAACCCTTTTCCTGGAAAATAAGTGTTAAACCCTT
TTCCTGGAAAATTAGTGTTAAGGCCTTTTCCTGGAAAATTAGTGTTAAAG
TCTTTTCCTGGAAAATTAGTGTTAAACCCTTTTCTCACAATTCTAGTTAC
AGGAGGAAGAACAATATTTCCTTATTGTCTTGACAATGGAAGAGGGTAAA
TGTCTTCATCCTAAGATTTCCTCCCGATGCCTCCCAGGAGGAGGAACGAG
GAGGTGCTCCGAGCCAAGCTGCAGGCGGAGAAGGAGAAGCTGGAGCGGGA
GAAGCGGGAGCTGGCGGAGGCGGCGCGGCGGAGGGAGGAGGAGGCGGCGT
ACGCCAGCCGGAAGGAGGCCAAGATGGCGGCCGAGCGGGCGCGCAAGGCG
TGGGCCGAGCAGGAGAGACAAGCCAAGGAGCTCGAGAAGAAGAAGGAGGC
AGAACTCAAGGTCGGTACCCCTACGTCCCGCTGGAATGGTCTAGTCCAGA
TGGATGGATCCTTTTTTTCTGGCAAATTCGTCTAAGATCCTTTTCCTTGA
ACATTAGAATGGACCAAAGATGAACAGGGGGTTTTCAGGCTATTTTGTAG
ATTCATTAAAGTTTGCTTGGAAGAAGTAGCTAATGATTCAGAACTAAAGA
AATGAGCTGAAAAAAACTTCACTGATTTTTTTTATAATTGGAGATGATCA
ATGGAATCATTCTGACACCTTCAGAGATCTAACCACCCCCCTGCTTACAA
GTGGAATCATCTGCATTTAGTATCATGAATGCCTGAATGCAATCAGTCCA
TTACAAAAGGAGGGGTGTAAAAAGTTGATGCTCGCTTTAAAAGCATGACC
TGCAAATGCTGAAATCATTGAGCAAATTAAGCGCCTAAAGTGCCTGATGT
GGCTATGCTCACACACACCCCTGTCAGTAAGTGGCATCGCCCACATTTCT
GATCACGAATGCTGGAATACGACCAGGCCACTCTAGAAATAGGGGTCTTA
AAAAAGCTGCTGCTTGTTGGTTTGGATTGTTGGTTTGGCAGAAAGAGCGG
TTGTCACAGACTGTTGTAATTCCATAGCTTGCTGCCAGAGGGCGCAATAA
CAGGTGAAAAAGGTTGCTCTGCCGCTGGACTATTTTTTTCCGCCCCCCAC
TGAACTGGCCCACTCTTTTCGCTGTCCAGACTGGACCGCTCTTTCCGCCA
ACCCACTTGCGACTGCTGAAATCAGAACCAAATGAAGAAACCCTGGCGTA
CGTTGTACCATGCTGTTGCAGGTTATTAAACAGTTTTCTGGTCTCGTTTC
TGGTTTTAGTGCAACAATTGTCAGGAGCCGGTATCACAGGTGAGACTCAC
GACTTCTAGCTGTTCTAAAGACTCCACCAGACCAATAACTACGCTGGCTG
AAAATTGTAGAATTCAGCCAAACAGGGAGAACAATTTTCCAGGGGAGTCC
GGCCACCATGATTATTATACAGGGCTTGTGCAGTACAAGGGTAAATGTTA
CCCCTGTATAAGGGTGAATGTTACCCTTGTACAAGGGTAAATGTTACCCT
TGTACAAGGGTAAATGTTAACCTTACCGTGGACTGACTCTCCTGGCCAGT
TGTTTACCCCATTTTGTTGAGTTCTACTCTGCATAACCTTTCAAGGTCAA
GGTCAACCCTGTAGGAAGGTCTGGTGGAGGCTAAGCTGTACCTGTGGCGT
TAACGTTGCGTCTGTGTCCGACCCGCTGCATGGTCGTGTCCAATGTCAGG
GTCAGAGAGCTTTTGTTACGAGGTTGCACTCCGGACAACCTGGCCGAAAA
TAGAGGTTGTCCCTGGGTGTCGCTTGCTGCGTTAGCGTACTGAAAATATT
GAAACTTAAGGGGTGGTTTTATTTTTGTGGGTTTGTTTTTCTAATTCATC
AACACCCAGAATGCGTTTCCAATGTATTTACTAAACTGTACTACAGAATT
GTTTCAATTGCAAATAGAAAACATGTAAAAACCTCATTTTTCCTCCTACC
CTAAAATAGAACCACAGCGCAAGTAAATGCATTAACAGTGTGTAAATAAG
ATGGCTTCTGCACTAGATATGTTCTGATCACGTTTCAGACTGATTATAAA
ACATGGGGCCAAAATAAATTCAAACAGTTTGCTTACAGTAGGCCAATCCT
GACTGTCCATCACAATTAGCAGTTCAACCAATGATAGCATGGCAATGAGC
AGTTCGACCAATGATATCATGGCAATTAGCAGTTCGACCAATGATAGCGT
GGCAATGAGCAGTTCGACCAATGATATCATGGCAATTAGCAGTTCGACCA
ATGATAGCGTGGCAATGAGCAGTTAGCAGTTCGACCAATGATAGCATGGC
AATGAGCAGTTCAGCCAATGATGTCGTGGCAATTAGTGGTTCGACCAATG
ATAGCATGGCAATTAGCAGTTCTACCTATGAGACTTAGTACCTGCATGTC
TGTCAAACTTTTGCATTTATGTTTTAATTTTTATTTCTATGGAGGTTGTG
AGTTTGGGATCTGTCTATGAATGGCTGAGTAACCTGAGTGGCAACAATCT
AGTGAGATCGATCATAGAGGCATGACAATCGCAATCACAATATGTCTTTA
AGTTTAAGAAACGTTGTTGACTTTCTTCCTGTTTTTTGTGCAGAGAAAAG
AGCAGATGGAGAGACGGCGGAGTTTCGAGGAGGTTCACAAGAAGGCGGAG
AAACGTGCCAAGGAGCTGTACATGAGTCTTAAGGAGGCGCGAGAAACCGC
CATCAAGGAGGCAGAGCAGGAGCAGGCACACAAGGAN Coding sequence (CDS) from alignment at Sc0000006:7411530..7420866+ >transcript:BL96532_cuf3 ID=transcript:BL96532_cuf3|Name=transcript:BL96532_cuf3|organism=Branchiostoma lanceolatum|type=CDS|length=723bp|location=Sequence derived from alignment at Sc0000006:7411530..7420866+ (Branchiostoma lanceolatum)
ATGCTGCAGCAGATCCTGAAGACGATGTACGTGGACCCTGAGATCCTGTC
AGAGCTGTCGGAGGAGCAGAAGCAGCTGCTGTTCTTTAAGATGCGAGAGG
AGCAGGTGCGCAGGTACAAGGACTGGGAACAGAAGGAGGACAAGAAGCCC
AAGAAACCTCCCAAACCAGGGAAGAGAAGGATCCAGTTCCTGAAAGGCGC
AGACGGCGAGCCGTGGACGTGGGTGATGGGCGAGGGCCGTGGGGATGCGA
CGATCGAGGAGATCATGGACCGGGAGGACCAGCTGAGAGCGCAGCGGCTG
GCTGAGAAGGAGGCCGAGGAGCTGAAGAGGAGGAACGAGGAGGTGCTCCG
AGCCAAGCTGCAGGCGGAGAAGGAGAAGCTGGAGCGGGAGAAGCGGGAGC
TGGCGGAGGCGGCGCGGCGGAGGGAGGAGGAGGCGGCGTACGCCAGCCGG
AAGGAGGCCAAGATGGCGGCCGAGCGGGCGCGCAAGGCGTGGGCCGAGCA
GGAGAGACAAGCCAAGGAGCTCGAGAAGAAGAAGGAGGCAGAACTCAAGT
GCAACAATTGTCAGGAGCCGGTATCACAGAGAAAAGAGCAGATGGAGAGA
CGGCGGAGTTTCGAGGAGGTTCACAAGAAGGCGGAGAAACGTGCCAAGGA
GCTGTACATGAGTCTTAAGGAGGCGCGAGAAACCGCCATCAAGGAGGCAG
AGCAGGAGCAGGCACACAAGGAN
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000006 | genome | Sc0000006:7411530..7420866 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL96532_cuf3 |
| Biotype | protein_coding |
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