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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96861_cuf2 >transcript:BL96861_cuf2-protein ID=transcript:BL96861_cuf2-protein|Name=transcript:BL96861_cuf2|organism=Branchiostoma lanceolatum|type=polypeptide|length=621bp
VEIICSTLTPPPEDFQVTNVTETTVRVSWKKQRTNSLAIGHRMWIRRSDT
TESLVTRHVPTSLTDVTFDDLSPAVEYVISATTINSHNEGLEVTVTAVTR
IDPPVALGVDDWTTDTISISWVPPKAALTTYNITYTGSGGRTSIGKSGDA
DSCELTGLVPGTQYDIDVVAVSRLGRSVAVSTRAVTDTDPPSSLRVSKAS
ATWMFLEWKPAVANVTSYELDISDEYDSAITLLRIEGNKKSYNVTNLIPE
TAYVIKMAAFSKHGRSVDITYSHRTGPISSIEVSTDGHPYTTTFSTTARA
DATTSMSTWSTSTAAQNINGIVESTASTVKTTIEPDASDESDDDTATDLR
TTTSSDTSTGKSTEPALISTTSSSGSDQEIPTTSLARTTESPGQKLQELV
EGLDISDVSQPEDIIAVTSNINEIINADGDDKSPLPPSVLKSAADIVLDL
ADAMKGSQGASVENMATIADALVQTASTVVDMLPEPETPIGSTSDTLFGS
DVDIDNVDLSPKQQVKMLKEKQKEKEDAQRETAQSIVASLDHVGDTLLAL
QPPNVKYRTSFKTGSIAVAVVRSPASEDIQLASDQIVANIPGRAKETQTN
DMLDVQISVFDKNPYSWAEST Run BLAST on NCBI mRNA from alignment at Sc0000007:3816309..3821730+ Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96861_cuf2 ID=transcript:BL96861_cuf2|Name=transcript:BL96861_cuf2|organism=Branchiostoma lanceolatum|type=mRNA|length=5422bp|location=Sequence derived from alignment at Sc0000007:3816309..3821730+ (Branchiostoma lanceolatum)
GTTGAGATTATCTGTTCGACGCGTAAGTTTAGATATCCATTGTTTATGTT
ATCCATAATTCATATTGAAAAGATGAAAAATATTGTTTTCTCTCGAAGCA
TTATTTTTTGCATCAGAGCAGCTTCGGCAATAATACAGTCAGAAATTCAT
ATTGATAATTGTTTTCAAAATTTCATGTTAAAAGAGATGGGTCAAAAGCG
TATTAAACAACACGCAAATGGAGATTGGGCATTAAATGATCGCTTTCTTT
TGTTCGGATGTAATCGGAATTTTAGGAACAACACTTTTGGAAAACATGTG
AGGAGCATATTTTGCATTAGCTGGCAAATGCTGGCTTTCGGGGTTTTGTC
AGCAAAATGTTTTTTCCCGTTTTTATCTTATATGTCGTTTTCTTTTTTTG
GGGGGGGGGGGCAGGTTCTTTGCATATTTCGTCTGTAACGTTTTCCCATT
CTGACATTCTGTTTTCTCTAGTGACGCCTCCACCTGAAGACTTTCAGGTG
ACAAACGTCACCGAAACGACCGTTCGGGTTTCCTGGAAGAAGCAGAGGAC
CAACTCCCTTGCCATTGGTCACCGGATGTGGATAAGGCGGAGTGATACTA
CCGAAAGCTTGGTGACACGGCACGTACCGACCAGTCTAACCGATGTAACC
TTCGACGACCTAAGTCCCGCCGTGGAATATGTGATATCGGCCACAACCAT
CAACAGTCACAACGAAGGACTGGAAGTGACTGTTACTGCTGTAACAAGTA
AGGAAAATATAATTACACCTCCAAGCAGGATTTCGTACGTGAATTTGAAA
AAGATTGATAATGAAAATAATATTGATAGTATTTCATACTGATAATACAA
AGTTATGGGTCATTTGATGACATATGAGTTATAATTTCAAAGTCTATCTT
ATATCTTTTTATCAAAGCTGAAATTCGTTTCTTTCTGTTAATGGACATAC
ACTTTTTTTTCAATTTCAGGAATTGACCCTCCAGTAGCTTTAGGTGTGGA
CGACTGGACCACCGACACTATTTCCATCTCATGGGTACCACCAAAAGCTG
CGCTAACCACCTACAACATAACCTACACCGGCAGTGGAGGGCGTACATCT
ATAGGGAAGTCAGGAGACGCGGACAGTTGTGAGTTGACAGGTCTGGTTCC
TGGTACTCAGTACGACATCGATGTGGTGGCCGTAAGCAGACTGGGGAGGA
GTGTCGCTGTCAGTACAAGAGCTGTTACAGGTTAGCAGTTTTTGAAGATT
CATAATGAAAATAGATTTTTCTTGAAGTTAAGTTGGTATGTATAGCAGAG
ATTGCAGCATTAATGTAAGCCATGAGTTGATTTCTAGACACACACACACA
CACACACACACACACACAAACACACACACATACAAACACACACACTCACA
CACACCTACATACATACATGAATACATACATACATACATACATACATACA
TACATACATACATACACTCTACCCTGACATATCTATTTGGTACACACAAT
TGCACGTACTGACAATCTACGTTGTTGCCCAATATTTCATAGCATTTCAG
TTATCAATGAGGTCGGTCTTCTCATAACCATGATAACCTTGTACACTTAT
GTTTTTAGACACAGACCCACCTTCGAGTTTACGAGTTTCCAAGGCCTCAG
CAACGTGGATGTTCCTGGAATGGAAGCCAGCTGTAGCAAACGTTACTTCT
TACGAGTTGGACATCTCAGACGAATATGACAGCGCGATAACACTTCTGAG
GTAAAGAACTATATTTGCACTGGATATCTATCTGATTGAACAAAAATAAG
TACGATGTGTAAAAAGATGTTACGTTGAAAACAGATTTTGAACTTTTTTG
ACCCGATAAGGTAGATATAGATCCCTTCGTCGTCTTGGATGCAGTAGGTT
AACATAATTAGCAATTTTGTTTCAACAGAATCGAGGGCAACAAAAAGTCC
TACAACGTCACAAATCTCATCCCGGAAACTGCCTACGTCATCAAGATGGC
GGCCTTCAGTAAGCATGGGCGTAGTGTGGACATCACTTATTCACATAGAA
CAGGTATTTGTTTATGTTCTTGTTAGATGGACACATAGAAAATGAATAAG
AATAATCTATTGATGAGCATATTCAATTGATTTATTAGTAAGTTTTCTTT
ACATTACATCAACTAATCTTCGTTTTTTGCACCACAGTTTTATTACATGT
ACGCCTTTGACAGAATATCTTGTGTCCCAAAAGGGCCGATATCGTCAATC
GAGGTCAGTACTGATGGGCATCCATACACAACGACCTTTTCTACAACAGC
ACGAGCTGACGCGACAACTTCTATGTCGACATGGTCAACATCGACCGCAG
CACAGAATATCAATGGTAAACACGTAACGTAGAAACTGCATGATAATCTA
CTTTTTAATAGCTTATTAAGAAGTTTTCTATCTAAGTGTTAACTTTGTAA
ATGTAAAATTATGGTCGGAAAAGTTGCCCAATGTCTACCCTTTCTTTCTT
TCTGCCAATTTCAGAACACTTTACTAACAATGGATTTTTTAAAGACTAAC
TTGAAACTTGCAGATATTCTTCGCATATTATCAAATAAACAATGCTTTAG
TTCTATGAACTGTGTTTGTGTATGTCCCACAATGTGTATTTTACCAACAC
TTCGACTGTAGGTATTGTAGAGAGCACTGCAAGTACAGTGAAGACAACAA
TTGAGCCTGATGCCTCGGATGAATCAGATGATGATACAGCAACAGACTTA
AGGACTACGACAAGCTCCGGTAAGATCGTTCTACAGTGTTATCAACTTGG
CTATTAGACATGTACACAGACATAATACTTGTGAGATAGATTATCGTCGG
CATGTGCGTACAAAATATAAAATAAGAATGTTACATGTTTTGTAAGTTAT
GGTATTTTTGGATATTCTGACAGAAATTGCATGTTTTAAAATGTTTTACT
CAGAGTCTGTAGCTTCGTAATCATATGGTTATTGATCCTTTTCGTGTCGT
ATCTGCTTCAACGTAACGTTGTATCAAAGACTTGTTTAATGATCGTTCAC
AGATACGTCAACTGGAAAGTCAACAGAGCCTGCACTGATCTCAACAACAT
CCTCGTCCGGTGAAATTAGTCCCTTTTTTGGGGATGTTTTTTTTGTGTGC
TTACAACATGATTTACACATTAGTTTAATTAATGTATGTATGGTACGATA
CATTTAAGGTTTCAATTTAATAATATAATATCATTATCTCAGGTTCAGAC
CAGGAAATTCCCACCACATCTCTGGCACGAACGACGGAAAGTCCCGGACA
GAAGGTATGTAGTATATACACCATATTCTGAATCACTAGGCCAACTATGT
CTCTACCACTTTCAATATCTTCATTCAACGTGAGTTCAATTTTCAGTGCA
AACATACCTCGGACAAGTTTGTGTTGGGTCACTAAATTCTATTATAGCTC
TAACCCATACTCTGATAAATATATTGTTCCTTGTAAAATGTTACAGCTTC
AGGAGTTGGTAGAAGGACTAGACATTTCTGATGTGTCACAGCCAGAGGAC
ATCATTGCAGTGACGTCAAACATCAATGAGATCATCAACGCTGACGGGGA
TGACAAGTCTCCATTGCCGCCTTCAGTTCTGGTGGGTTGAAAACTATTGA
TGTATGTATGTATGTGTGTGTGTGTGTGTATGTGTTGATGGATGCATGTG
TATGTATGTGACAGCTATGTAGGTGTGTGTGTGTGTGTACGTGCAAGTGT
GTATATTTATGTATGTGTGTGTGTATGTATGTATGCGTCTGTGTTTGTAT
GTGTGTGTGTGTGTGTGCATGTTTGGGCCTTGGGATGACGAGGGCAATGG
TCGATTTGGGTTTCCAAGTGGCTTCCCGTGATCATTGCATATAGCAGTCT
CTTATACATGAGCTGTTTGTAAATAAGAAGATACTGAATCATGCACTATG
GAATGAAGGACACTTTGATATAACGTTACAGTTGCATCAAGAGTTGGATT
TAATTTGTGTCAATTCTTCTCCCAGAAATCTGCTGCAGATATCGTGTTGG
ATCTTGCCGATGCCATGAAGGGGTCACAGGGCGCATCGGTAGAGAACATG
GCGACCATAGCTGATGGTGAGAAACATAATGGTTACAATCATAATTGTAT
GTTTAAAAAAAAAAACTTTATTGTACATGTTCCCGATCAGCAGACTGACT
ACATATCGGTTGCAGCAAATTCTTTTGTACTATATACAAACAGACACCTC
TGTACAAATTGTTTTGATATCTCTTAAATGGAAGTGATTAAACTTAAAAT
GAATATGTAGATATTTAGCAATAAGGTATAGTGTCATTCATAATGAGTGA
AACGGTCTGATTCTTAACATCAATACGTCTTTTTCGCGACCTAGCCTTGG
TACAGACAGCTTCAACAGTTGTCGACATGTTACCGGAACCGGAAACACCG
ATCGGAAGTACTTCCGACACCCTGTTCGGAAGTGACGTGGACATTGACAA
CGTAGATCTTTCACCCAAGCAGCAGGTGAAGATGTTAAAGGAGAAGCAGA
AGGAAAAAGAAGACGCGGTGAGGATTCAAACTAAATGCGATGTTGCAAAA
TCAAAATGAATTCTAAATTTTACCCAGTTGCTTATTAGTAACTCTTACCC
TGCGTATCTTATTTATTCTTTTTACTTATTACTCTCTAGTCTTATTCTTT
TTACCTGGATACCTAACCTTCATCAACGTATCAAGATTAACTCTAATACC
ATAATCTCACACAAAGATCATTTTTATGCATAAAGTCTTGCCTAAAATAA
TTTTTCTGTACGTTTTCAAGATTAATGCTGATTACTCATAATACTCACAG
AATATCATTTCTATGTATACATGTATGATTTGGAAGTCTTATCTCAAAAA
TTCTAACGTCTTTGTATATATCTCTTCTGTGTAACTTAGCAACGGGAAAC
AGCGCAGTCTATAGTGGCATCTTTGGACCATGTTGGTGACACCCTGCTGG
CGTTGCAGCCTCCGAATGTGAAATACCGGACAAGCTTTAAAACAGGAAGC
ATCGCCGTCGCTGTGGTGAGATCCCCTGCAAGCGAAGACATCCAACTTGC
CTCGGATCAGATCGTGGCAAACATCCCGGGCAGAGCAAAGGAAACTCAAA
CCAACGATATGCTGGATGTCCAGGTAAGCCCCAACCAAGTCGTAGTAAAC
TCAGCAATCTTGCTACTGTACATGTTTTGTAAAGTCGTAAAAGGCAATGT
GTACGTGGTTGACAAGCTACAGAGTTTGATTTTCGGCAATTTTAAGTCCC
TTTTTTGTACTGGACAATGTATGATTTTAAGCTTATTACTAACTTTAAAC
TAATTGCTTTTTTTTTAAATCACAGATATCAGTTTTCGACAAGAACCCGT
ACTCTTGGGCTGAATCGACAGG Coding sequence (CDS) from alignment at Sc0000007:3816309..3821730+ >transcript:BL96861_cuf2 ID=transcript:BL96861_cuf2|Name=transcript:BL96861_cuf2|organism=Branchiostoma lanceolatum|type=CDS|length=1863bp|location=Sequence derived from alignment at Sc0000007:3816309..3821730+ (Branchiostoma lanceolatum)
GTTGAGATTATCTGTTCGACGCTGACGCCTCCACCTGAAGACTTTCAGGT
GACAAACGTCACCGAAACGACCGTTCGGGTTTCCTGGAAGAAGCAGAGGA
CCAACTCCCTTGCCATTGGTCACCGGATGTGGATAAGGCGGAGTGATACT
ACCGAAAGCTTGGTGACACGGCACGTACCGACCAGTCTAACCGATGTAAC
CTTCGACGACCTAAGTCCCGCCGTGGAATATGTGATATCGGCCACAACCA
TCAACAGTCACAACGAAGGACTGGAAGTGACTGTTACTGCTGTAACAAGA
ATTGACCCTCCAGTAGCTTTAGGTGTGGACGACTGGACCACCGACACTAT
TTCCATCTCATGGGTACCACCAAAAGCTGCGCTAACCACCTACAACATAA
CCTACACCGGCAGTGGAGGGCGTACATCTATAGGGAAGTCAGGAGACGCG
GACAGTTGTGAGTTGACAGGTCTGGTTCCTGGTACTCAGTACGACATCGA
TGTGGTGGCCGTAAGCAGACTGGGGAGGAGTGTCGCTGTCAGTACAAGAG
CTGTTACAGACACAGACCCACCTTCGAGTTTACGAGTTTCCAAGGCCTCA
GCAACGTGGATGTTCCTGGAATGGAAGCCAGCTGTAGCAAACGTTACTTC
TTACGAGTTGGACATCTCAGACGAATATGACAGCGCGATAACACTTCTGA
GAATCGAGGGCAACAAAAAGTCCTACAACGTCACAAATCTCATCCCGGAA
ACTGCCTACGTCATCAAGATGGCGGCCTTCAGTAAGCATGGGCGTAGTGT
GGACATCACTTATTCACATAGAACAGGGCCGATATCGTCAATCGAGGTCA
GTACTGATGGGCATCCATACACAACGACCTTTTCTACAACAGCACGAGCT
GACGCGACAACTTCTATGTCGACATGGTCAACATCGACCGCAGCACAGAA
TATCAATGGTATTGTAGAGAGCACTGCAAGTACAGTGAAGACAACAATTG
AGCCTGATGCCTCGGATGAATCAGATGATGATACAGCAACAGACTTAAGG
ACTACGACAAGCTCCGATACGTCAACTGGAAAGTCAACAGAGCCTGCACT
GATCTCAACAACATCCTCGTCCGGTTCAGACCAGGAAATTCCCACCACAT
CTCTGGCACGAACGACGGAAAGTCCCGGACAGAAGCTTCAGGAGTTGGTA
GAAGGACTAGACATTTCTGATGTGTCACAGCCAGAGGACATCATTGCAGT
GACGTCAAACATCAATGAGATCATCAACGCTGACGGGGATGACAAGTCTC
CATTGCCGCCTTCAGTTCTGAAATCTGCTGCAGATATCGTGTTGGATCTT
GCCGATGCCATGAAGGGGTCACAGGGCGCATCGGTAGAGAACATGGCGAC
CATAGCTGATGCCTTGGTACAGACAGCTTCAACAGTTGTCGACATGTTAC
CGGAACCGGAAACACCGATCGGAAGTACTTCCGACACCCTGTTCGGAAGT
GACGTGGACATTGACAACGTAGATCTTTCACCCAAGCAGCAGGTGAAGAT
GTTAAAGGAGAAGCAGAAGGAAAAAGAAGACGCGCAACGGGAAACAGCGC
AGTCTATAGTGGCATCTTTGGACCATGTTGGTGACACCCTGCTGGCGTTG
CAGCCTCCGAATGTGAAATACCGGACAAGCTTTAAAACAGGAAGCATCGC
CGTCGCTGTGGTGAGATCCCCTGCAAGCGAAGACATCCAACTTGCCTCGG
ATCAGATCGTGGCAAACATCCCGGGCAGAGCAAAGGAAACTCAAACCAAC
GATATGCTGGATGTCCAGATATCAGTTTTCGACAAGAACCCGTACTCTTG
GGCTGAATCGACA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000007 | genome | Sc0000007:3816309..3821730 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL96861_cuf2 |
| Biotype | protein_coding |
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