TCONS_00044909 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044909
Unique NameTCONS_00044909
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length653

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044909 ID=TCONS_00044909|Name=TCONS_00044909|organism=Clytia hemisphaerica|type=transcript|length=653bp
AAAAAGCCAAACAAACAGCCATGGTTGGACAGACGCTCGGAAAATTGGAC
AAAGCTATCGATTCCATTACTACTAAACTAACAGCCGAAGCTGCTGCAGC
AGGTGCGGGCGGAGGTGGCGCTGCTGGTGGCGGAGGTGGAGGCGGTGGCG
GTGGTGCTGCAGgcggtggtggtggtggaggtggtggagctCCTTCTCCC
GAAATGGTGAAACTGCAAGCAACTGTTGGTGATTTAGCAGACAAGCTAGA
TGCTGTGAATGAGAAAGTTGACGGTGGGGGTGCCGGCATTTTAGGGCCAC
TTGCTCCAGGCGCTAAAGCAGGTCCAGTGGGTACCGAGCTAGGCAAGATG
GGTGCAGCTATTCAACAGTTGGCATCAGAAGTTGCGGGAATGAAAGAAGC
AGAAAAATCCAAGGAAGCTGGTGATATTCCTGGATTTAAGAATGATAAGG
CGTTGAACCAAGCCACTAAGATTTTGCTCGCATTGCAAAAGAATCAGAAG
CCACCGCTTCAACAAGTTGTTGAAGGTTATTCACAAGCAATGAAAGCGTC
CGATCAACCGTCCGTACCACCGGACACTGGTACTGCAGCTGCCATCTTGG
CGACTGCTACTGTCAATCAAGCTCTAAATGCTATCAAGAACGCGGCAAAG
GTa
Run BLAST on NCBI

protein sequence of TCONS_00044909-protein

>TCONS_00044909-protein ID=TCONS_00044909-protein|Name=TCONS_00044909-protein|organism=Clytia hemisphaerica|type=polypeptide|length=217bp
KAKQTAMVGQTLGKLDKAIDSITTKLTAEAAAAGAGGGGAAGGGGGGGGG
GAAGGGGGGGGGAPSPEMVKLQATVGDLADKLDAVNEKVDGGGAGILGPL
APGAKAGPVGTELGKMGAAIQQLASEVAGMKEAEKSKEAGDIPGFKNDKA
LNQATKILLALQKNQKPPLQQVVEGYSQAMKASDQPSVPPDTGTAAAILA
TATVNQALNAIKNAAKV
Run BLAST on NCBI

transcript from alignment at sc0006446:44..1852-

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044909 ID=TCONS_00044909|Name=TCONS_00044909|organism=Clytia hemisphaerica|type=transcript|length=1809bp|location=Sequence derived from alignment at sc0006446:44..1852- (Clytia hemisphaerica)
AAAAAGCCAAACAAACAGCCATGGTTGGACAGACGCTCGGAAAATTGGAC
AAAGCTATCGATTCCATTACTACTAAACTAACAGCCGAAGCTGCTGCAGC
AGGTGCGGGCGGAGGTGGCGCTGCTGGTGGCGGAGGTGGAGGCGGTGGCG
GTGGTGCTGCAGGTAAACATTTTAGGCTTCGCTATATTTCCCAGCTGGCA
CACAATGTTTTTTCAATGTTTATCTAATGTTCACAACGTCCATATAACGT
TAAATGAACGTTGAAGCAATGTTTTGTGTTAAAACAAGCTTCAAATATAG
CTCCTTCCTACCGAAATATTGTACTCCCACAACAAAACTAGATTATCTTA
ATGATCTGCTACTTTACAGAATATTTTTAGTGTTTTTTAATGTCTTTTTG
GCTTGGATAATAGGATAATACCTATGTGAGTCAGTATTTTAATTGTGGTA
GTGCATCATCAAGGTACGGTGTGCAAGGTGGTGGGCTCTCAAAATGGTAC
TTGATGCCTCTCTGCTTGATGCTCAGCAATTAGGAGAAGGATCAAGGGTA
ATTGGAGTAATCCAGGGAGAAAAGGGTGACGATTGAAAGAGGAGCCTTCG
GGTCGCCACCGACTGTGGTCGTAGACTTGCTTATATACCCACTAAAACCT
ATTTGGTTTAAAGAACTACAAATTGTTTTATCTTGATAGGCGGTGGTGGT
GGTGGAGGTGGTGGAGCTCCTTCTCCCGAAATGGTGAAACTGCAAGCAAC
TGTTGGTGATTTAGCAGACAAGCTAGATGCTGTGAATGAGAAAGTTGACG
GTGGGGGTGCCGGCATTTTAGGGCCACTTGCTCCAGGCGCTAAAGCAGGT
CCAGTGGGTACCGAGCTAGGCAAGATGGGTGCAGCTATTCAACAGTTGGC
ATCAGAAGTTGCGGGAATGAAAGAAGCAGAAAAATCCAAGGAAGCTGGTG
ATATTCCTGGATTTAAGAATGATAAGGCGTTGAACCAAGCCACTAAGATT
TTGCTCGCATTGCAAAAGAATCAGAAGCCACCGCTTCAACAAGTAAGGCA
TTTTATGATTTCTAAAGGGATAATAAGATTGTGATTTAAAACATAAAGGA
TAGAATAAAATAAATAAGTTTAAAACTTAGGGTTGCAAGCTGACGGGTAT
GTGCCACCCAACTTTCGACCCTCTGACTCTTAGAGGGACTAAAAAGGAGA
AAAAATAGAAAAATTTAGCGATTTTTACGACCATTATCAGGTCTAATTTG
ACCAAATTTTGATCTTTCAAGGAGCAAAAAGAAGAAACCTTCCTATTTTT
CCGACCCTTAGAGGGACTGAAATTTAGGGTTGCACGCTGACGGGTATGTG
CCGCCCGACTTTCGACCTTCGGACCCTTAGAGGGAATAAATAAAAGAATT
TTACGACCCTTATCGGGACTAATTTGACCAAATTTCGATATTTTTAGGGA
CAAAAAAATTGAAATTATCCTATTTTTCCGATCCTTTATGGGAGTGAGAT
TTGATTTTCTGATCTTTCCAACCCTTAGTGGGACTTTGGAGGTCCAAAAA
AGGTACCCTTAAGGACGGCACATACCCGTAGCCTCCATTTGCCTAAGTAT
ACCCCCCGGATGCTTTCACAAGCTCAAATAAAATATCATCAATCTGACAA
ATATTCTTGTGATCTTTACAGGTTGTTGAAGGTTATTCACAAGCAATGAA
AGCGTCCGATCAACCGTCCGTACCACCGGACACTGGTACTGCAGCTGCCA
TCTTGGCGACTGCTACTGTCAATCAAGCTCTAAATGCTATCAAGAACGCG
GCAAAGGTA

Coding sequence (CDS) from alignment at sc0006446:44..1852-

>TCONS_00044909 ID=TCONS_00044909|Name=TCONS_00044909|organism=Clytia hemisphaerica|type=CDS|length=1953bp|location=Sequence derived from alignment at sc0006446:44..1852- (Clytia hemisphaerica)
GTTGTTGAAGGTTATTCACAAGCAATGAAAGCGTCCGATCAACCGTCCGT
ACCACCGGACACTGGTACTGCAGCTGCCATCTTGGCGACTGCTACTGTCA
ATCAAGCTCTAAATGCTATCAAGAACGCGGCAAAGGTAGCGGTGGTGGTG
GTGGAGGTGGTGGAGCTCCTTCTCCCGAAATGGTGAAACTGCAAGCAACT
GTTGGTGATTTAGCAGACAAGCTAGATGCTGTGAATGAGAAAGTTGACGG
TGGGGGTGCCGGCATTTTAGGGCCACTTGCTCCAGGCGCTAAAGCAGGTC
CAGTGGGTACCGAGCTAGGCAAGATGGGTGCAGCTATTCAACAGTTGGCA
TCAGAAGTTGCGGGAATGAAAGAAGCAGAAAAATCCAAGGAAGCTGGTGA
TATTCCTGGATTTAAGAATGATAAGGCGTTGAACCAAGCCACTAAGATTT
TGCTCGCATTGCAAAAGAATCAGAAGCCACCGCTTCAACAAAAAGCCAAA
CAAACAGCCATGGTTGGACAGACGCTCGGAAAATTGGACAAAGCTATCGA
TTCCATTACTACTAAACTAACAGCCGAAGCTGCTGCAGCAGGTGCGGGCG
GAGGTGGCGCTGCTGGTGGCGGAGGTGGAGGCGGTGGCGGTGGTGCTGCA
GGTTGTTGAAGGTTATTCACAAGCAATGAAAGCGTCCGATCAACCGTCCG
TACCACCGGACACTGGTACTGCAGCTGCCATCTTGGCGACTGCTACTGTC
AATCAAGCTCTAAATGCTATCAAGAACGCGGCAAAGGTAGCGGTGGTGGT
GGTGGAGGTGGTGGAGCTCCTTCTCCCGAAATGGTGAAACTGCAAGCAAC
TGTTGGTGATTTAGCAGACAAGCTAGATGCTGTGAATGAGAAAGTTGACG
GTGGGGGTGCCGGCATTTTAGGGCCACTTGCTCCAGGCGCTAAAGCAGGT
CCAGTGGGTACCGAGCTAGGCAAGATGGGTGCAGCTATTCAACAGTTGGC
ATCAGAAGTTGCGGGAATGAAAGAAGCAGAAAAATCCAAGGAAGCTGGTG
ATATTCCTGGATTTAAGAATGATAAGGCGTTGAACCAAGCCACTAAGATT
TTGCTCGCATTGCAAAAGAATCAGAAGCCACCGCTTCAACAAAAAGCCAA
ACAAACAGCCATGGTTGGACAGACGCTCGGAAAATTGGACAAAGCTATCG
ATTCCATTACTACTAAACTAACAGCCGAAGCTGCTGCAGCAGGTGCGGGC
GGAGGTGGCGCTGCTGGTGGCGGAGGTGGAGGCGGTGGCGGTGGTGCTGC
AGGTTGTTGAAGGTTATTCACAAGCAATGAAAGCGTCCGATCAACCGTCC
GTACCACCGGACACTGGTACTGCAGCTGCCATCTTGGCGACTGCTACTGT
CAATCAAGCTCTAAATGCTATCAAGAACGCGGCAAAGGTAGCGGTGGTGG
TGGTGGAGGTGGTGGAGCTCCTTCTCCCGAAATGGTGAAACTGCAAGCAA
CTGTTGGTGATTTAGCAGACAAGCTAGATGCTGTGAATGAGAAAGTTGAC
GGTGGGGGTGCCGGCATTTTAGGGCCACTTGCTCCAGGCGCTAAAGCAGG
TCCAGTGGGTACCGAGCTAGGCAAGATGGGTGCAGCTATTCAACAGTTGG
CATCAGAAGTTGCGGGAATGAAAGAAGCAGAAAAATCCAAGGAAGCTGGT
GATATTCCTGGATTTAAGAATGATAAGGCGTTGAACCAAGCCACTAAGAT
TTTGCTCGCATTGCAAAAGAATCAGAAGCCACCGCTTCAACAAAAAGCCA
AACAAACAGCCATGGTTGGACAGACGCTCGGAAAATTGGACAAAGCTATC
GATTCCATTACTACTAAACTAACAGCCGAAGCTGCTGCAGCAGGTGCGGG
CGGAGGTGGCGCTGCTGGTGGCGGAGGTGGAGGCGGTGGCGGTGGTGCTG
CAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028507XLOC_028507Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044909-proteinTCONS_00044909-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044909-exon-sc0006446-1575043694:1691..1852TCONS_00044909-exon-sc0006446-1575043694:1691..1852Clytia hemisphaericaexon
TCONS_00044909-exon-sc0006446-1575043694:811..1163TCONS_00044909-exon-sc0006446-1575043694:811..1163Clytia hemisphaericaexon
TCONS_00044909-exon-sc0006446-1575043694:44..181TCONS_00044909-exon-sc0006446-1575043694:44..181Clytia hemisphaericaexon
TCONS_00044909-exon-sc0006446-1510915933:1691..1852TCONS_00044909-exon-sc0006446-1510915933:1691..1852Clytia hemisphaericaexon
TCONS_00044909-exon-sc0006446-1510915933:811..1163TCONS_00044909-exon-sc0006446-1510915933:811..1163Clytia hemisphaericaexon
TCONS_00044909-exon-sc0006446-1510915933:44..181TCONS_00044909-exon-sc0006446-1510915933:44..181Clytia hemisphaericaexon
TCONS_00044909-exon-sc0006446-1491911889:1691..1852TCONS_00044909-exon-sc0006446-1491911889:1691..1852Clytia hemisphaericaexon
TCONS_00044909-exon-sc0006446-1491911889:811..1163TCONS_00044909-exon-sc0006446-1491911889:811..1163Clytia hemisphaericaexon
TCONS_00044909-exon-sc0006446-1491911889:44..181TCONS_00044909-exon-sc0006446-1491911889:44..181Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0006446supercontigsc0006446:44..1852 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0.410921	1.05792	0.0673343	0.0907662	0.728589	0.330891	1.22227	0.993396	0.317608	1.02253	0.539858	0.430373	0	0	0.695309	0.904393	0.366469	0.666347	1.20106	1.76101	0.219131	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044909 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top