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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96638_cuf1 >transcript:BL96638_cuf1-protein ID=transcript:BL96638_cuf1-protein|Name=transcript:BL96638_cuf1|organism=Branchiostoma lanceolatum|type=polypeptide|length=373bp
DLHHFHIRDDLVWKPTLTLQGNADARYSGGFPSSEVDVDETGQVTWTVES
LARTMCDLDPFLFPQDNMTCDVCWKAKREYKIVCANSTSHEDENLLTCQN
DKEDVEDGEWSGKATLSAINNTACLTMTLKRDPTYHLSTTISPCLILIVL
MIITFIIPIDKGDRIGFGVTVLLAMVVSLVVITGFLPVSNTLPFIAMLII
VCMALMALFMLTTVFIIIIHDKKGPVPKWARTIFLKHLARALLMGDLTEK
LTKEPPTDYTYSGVAKVVGGHTNNSFMFDTDVRFAGGKLPRKMKNEVGAI
IGIKLDELNSIVRLRLDRIKRSIDVLAMATSGNNEEEVAEYALLAEVLDR
VCLVLYIIAIAVAVPCTQFMSRN Run BLAST on NCBI mRNA from alignment at Sc0000190:26969..32231- Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96638_cuf1 ID=transcript:BL96638_cuf1|Name=transcript:BL96638_cuf1|organism=Branchiostoma lanceolatum|type=mRNA|length=5263bp|location=Sequence derived from alignment at Sc0000190:26969..32231- (Branchiostoma lanceolatum)
GATTTACATCATTTCCATATCCGTGACGATCTAGTCTGGAAACCAACGTT
GACACTACAGGGAAAGTAATTAATTTATTCATTCATTGGTTCTATTGATA
TGCAAACAAGATGACCAACTAGGCCAATATTAAGGAGTAGCCTTAGAACT
GCCTAATGCCGACTAAGGTTACAATAGAATCGCTACTCATTTAGATATGT
GTAGTGAGTTCGTGTACTATAGGTGCGGCTCCCCTCAAACGCAGGATCTC
TATCTATCTTTTATATATCTGAGCGATGTCCCAAGCCAAAGCAAGGTGCT
TTATCTCACCCGATGGTTCATGCCACAAAATCAGACGCGGTAAAACTGAT
GCCATGAAGTTCCATCTACATTCTAAAAACTTTCATACTCCAGGTACTGC
AGGTAGCAAGGTCGAGTATAATTTGCTGGACACTCACATCTGCAATATAC
ATCAATTTCATCATCATTTCATACATCCATTTAAAAGATGATAATCTTTT
TACAGATAATCAGGGTTTTTATGTACAACGAAGACATAACATGGCATCAG
CTATTTCGATAATCATTTGTCACCTTCATCAGCGAAAGATGATTATATGT
CGTTTTCTATTTCTTTCAAGCGCGGACGCAAGATACAGCGGTGGATTCCC
CAGTTCAGAGGTAGATGTCGATGAAACTGGTCAAGTCACCTGGACTGTAG
AATCACTGGCTAGGACCATGTGTGATCTGGATCCGTTCCTCTTCCCTCAG
GATAACATGACGTGCGATGTGTGCTGGAAGGCAAAGAGAGAGTATAAAAT
CGGTACAGCTTTGTTAACGTACAGAGTAATAATACTAGTAATAAGTTTAT
TGCAAGTTCCTGCCCGTAGCCTAATTGCAAGTACATGAAACATGGAAGGA
CGGACAGACAATTGGTAACAATATAGCATGTGGCTATTCTAGTTCAAATA
CTAATACTAAATTCTATCTTATTTGGGCTTGACTTCTTTTTTCGAGACAG
TGGAAGACGTATGCTCCCACTTTTCCTGTTATGTGTGGGTTTTGTGATGT
TAACAGGAGAGTAGTTTTCTTTTGGTCTGTAAACATGGAGAAGTTTGGAT
GGAATTTCATGACCTCTTTAAACAGCGTCTATCTTTCTTGGTCGTATAAC
GGGCAACTTGAAATAAAATGTGTTTCATCTTCCACCGTGTTTGACATGCA
GTATTTACAAGTTCAATAATAACGACAATTGTACACGGTACAAAGTATGG
CAGCAATTCTTAAACATAATACACAATGGAGATATAGAATAAAACTCAAC
ATACTAATTACTAATACAATGCAAAAGGGCTAGGATACGTTTTTGACATA
GTGTTGTAATCGAGTGGGTTAATAATTAGTTTCGGTATTTGTTCTAATGA
CAAAGCAGTCATTTAGATATTTACCTATTTTTGCATTGTGGGGGTTGTTG
CATTTAAGTATATACTCAAAACAGTCAGTAGCATCGAGGGTCAAAAAAGT
TGTTGTACAAGAAATGCGAATGACTTATTGATAGCCTGCTATCTCTCCCT
GTTATCGCTACCGAGTCAATTATGTCCCAACCACGTGGCAACAATAGCTA
GCTATACAGGAGTAGTATTCGAACACTTAACTTCAATACCATATCGTAAT
TTATTTAGTTTTTCTTACCTCATCACGGTAAATGTGTAACAAATGGGTAA
ATAACGTGTGTGTGTGTGGGGGGGGGTCACTTGCAATTGACAGGGTTTTT
TTTCACGTGCTCGAACTCACGGCGTTCCATCGCTAGTTGACAGAAAGAGT
CGGGATTTGATTATCAAATTATCACTTAAATCTGTAGTAATTTCATAAGA
AATGCATTCTCACCTTTTTTTAAGACATTTTACATTTTGGCGATGCAAGA
CGTTACATGAATGCAGCTTCCTATTTTGTGCTACGCTAGACTTGGGACGC
TTTTTTTCTTTCTGTCTTCAGAAACGTACGCATGCGCAGCAGGTATATAA
TTAGTTTCTTGGGGGCCTTTCTACATGTTGGCAATCTGCAAGGCAGTTGA
CCTAGTACGTAAACCTGTTGAACATAACATAAACTTTTCTCTCTTCTTCA
AAAGTGTGTGCAAATTCAACGAGTCATGAAGACGAGAACTTACTGACTTG
CCAAAACGACAAAGAAGATGTTGAGGATGGAGAATGGAGTGGAAAAGCAA
CTCTCTCAGCCATCAACAACACGGCCTGTCTGACTATGACACTCAAACGA
GATCCCACCTATCATCTCTCCACAACCATCTCTCCCTGCCTCATCCTCAT
CGTCCTTATGATCATCACCTTCATCATTCCCATAGACAAGGGCGATAGGA
TTGGATTCGGAGTCACCGTGTTGCTGGCTATGGTGGTGTCGCTCGTGGTC
ATAACAGGATTTCTCCCTGTGTCAAACACCCTCCCATTCATAGGTGAGGT
GATTCATCGAAANTCCACAACCATCTCTCCCTGCCTCATCCTTATCGTCC
TTATGATCATCACCTTCATCATTCCCATAGACAAGGGCGATAGGATTGGA
TTCGGAGTCACCGTGTTGCTGGCTATGGTGGTGTCGCTCGTGGTCATAAC
AGGATTTCTCCCTGTGTCAAACACCCTCCCATTCATAGGTGAGGTGATTC
ATCGAAATATCTTAATATTCAACAGCACAGGATATAACAATTAGAACATG
GCCACTACCCCTCAGCCAATGAGAGCCCTTCAATTACTGTGACTATATCT
CAGTAGTGCAGAAAAAAAGTGTGGGACTAACAAAAAAGTGTGGTACTAAG
TCATTTGCATACAAAAAAGTGTGGAACTAAGTCATTTGCATATTATGCAA
ATGACTTAGTACCACACTTTTGTTGTTAGTACCACACTTTTTCCGCATCA
CTGCTCAGGCCTGCCCACATGAGACCTGGGTCACAGTGTCAGCTAACTGC
CAAGGGGGTAGGGAGGGTTCATTATTTGATTCACATAAGGACATCGTTAT
CTTACAGCCACACAAGAACAAAAGTATCAAACTGAATCAAATCTTTAAAG
ACTAACAGGCACAAATTCAAGTTAAGCAATCGTTACAATGAAATGGAAAG
TCAAGTTTATAAACAGTTGGGAAACTGGGAATCAGAATCACAGTTTTTAG
ATTTTTGAAAAGAACACACATAATGCTCTCAACTCAAACAGTTCCAGTAC
TCCAATGAAAAGAAAAGGAACATTTTAGTAACTCACAGTTAAAAAATCCC
AGTTCAAAATCTGTATGTAATATTTTGAGACCACGGGGATGAATTGTAAA
AGAAAAACTTCGTGGTAGTGGCCAGGTTCTGAAAACAGATAGGACATGTA
CGAAGCTTGTTTACAGGTCATTCTGCTTCAATATAATGCTTTTTACCTTT
TGTTAGTATGATGTGCTGAAAACAACATCTTTGATTCCTATTGAGAGAAA
GAGAATCTTCGGGGATGTGGCCATGTTCTAAAACAGTTAGGCCATGGCCT
CGGCCTTTCTATGCGAAAATAGTGAAGCTCCCCCACTCAGGGCTTCCAGA
CTCCCTCGGCTTCGCCTCGGGAGTCTAGAAAGCCCCTTGTGGGAGGAGCT
TCCCTACTTTCGCATAGAAAGGCCTCAGCCATGGCCTAACTATTACTTAG
GATTCATCAATTATGTTTACCTTTACAGATGGGAAAAGTATACGTTTTCG
CTCTGTTTTTCTTCTTCTCCCCTAAACAAATAAGATCAATGTCCTGGTCC
AGACGATTGTCACCATGGTAAGTGCAGGTGTATCAGACACCCGGTGCTGT
TTAATTACATTGTTTATTATGTAGCAAGTGGCAGGACAGAGCTGGGGGCC
TGGTCACCATATATAGGAATGTCTTTGAGTAAGACTAAACAGAGCAGTAG
TTTTTTCGGCTAGACCATGTGTAGATCAACAGTATGTATTTTGCTAGCAA
ATGTCATCTTTCCAGTTAGTTTTCTTGACCTTTTGGCTGTGATGAGATAA
CCTATATGATATCATTTGGTCATCGCAAGTGACATTTACTTCTTTTATAG
CTATGCTGATTATTGTGTGCATGGCTCTGATGGCACTCTTCATGCTGACG
ACTGTCTTTATCATCATCATACACGACAAGAAAGGACCTGTTCCGAAATG
GGCACGGACAATCTTCTTGAAACACTTAGCAAGGTCTGTATGGCAAATAT
TCTAGTGATTCACCATTCTTTAGAACTGTATGTGCAGTGTGTATAGTCAT
TGGTTAGTGACCGACCATGTTTAGTTTAGGGGTTCGAATATCGACTTTTG
TCGCCTGCATGTTATTGGCAAGGGCTGTGGACCTTGTCCCCCGGTAACAC
AGAAGGTAAATCGGTCGGCTGACGAATCTGCTAACTCTATAATGCATTTC
GTTCCATATCGTTCCATTTCGTTTCATTTCACACATTCTGGAGACCCCCG
CCAGTAGTAAGCCCAGTGTTCTCTTGATCATTGCGCGATTTTAAGAGATC
GGCCGATGATTGCAGGTCCCCCGATGGGGTAGACTTTCGGGTAAAAGATA
CACTTTGAACTTGGCTACCTTCTGGTGTTACGGTTGAAGACTTTTCGATA
GGGTCTGTAGGACGGGACGTTAAGCCGTGGTCCACTCTCTTCTGTGCGTG
TTGAAAAGAACGTAAAATAAACATGTGAATATTGTATATAGTGCCGGGAA
TCACTAACGCGGCTGGTAAAATATTTGCTCATTATCAAACTAAACTAATT
TGAGATCACTTTTTATGTTTTTCACTTGTACTCATGTATATATGTATCCA
TCTCTCAATGTGATGCAATCTTGAAAATGTTTTTATACGTGTAGGGCACT
GCTAATGGGAGACCTGACTGAGAAGCTGACAAAAGAGCCACCAACTGATT
ACACTTACAGTGGTGTGGCGAAGGTCGTCGGTGGACACACCAATAACTCT
TTCATGTTTGACACAGACGTTCGATTTGCAGGAGGCAAATTGCCCCGTAA
AATGAAGAATGAGGTCGGAGCTATCATTGGTATAAAGCTGGATGAGCTAA
ATAGTATCGTTAGGCTGAGGCTGGATAGAATAAAGCGCTCCATTGATGTT
CTGGCAATGGCAACCAGTGGTAACAATGAGGAAGAGGTTGCAGAGTACGC
TCTGTTGGCTGAAGTCCTCGACAGGGTGTGCCTGGTGCTCTACATAATCG
CCATCGCCGTGGCAGTTCCTTGTACTCAGTTCATGAGTCGCAACTGATCG
CCATCGCTTAAAG Coding sequence (CDS) from alignment at Sc0000190:26969..32231- >transcript:BL96638_cuf1 ID=transcript:BL96638_cuf1|Name=transcript:BL96638_cuf1|organism=Branchiostoma lanceolatum|type=CDS|length=1122bp|location=Sequence derived from alignment at Sc0000190:26969..32231- (Branchiostoma lanceolatum)
GATTTACATCATTTCCATATCCGTGACGATCTAGTCTGGAAACCAACGTT
GACACTACAGGGAAACGCGGACGCAAGATACAGCGGTGGATTCCCCAGTT
CAGAGGTAGATGTCGATGAAACTGGTCAAGTCACCTGGACTGTAGAATCA
CTGGCTAGGACCATGTGTGATCTGGATCCGTTCCTCTTCCCTCAGGATAA
CATGACGTGCGATGTGTGCTGGAAGGCAAAGAGAGAGTATAAAATCGTGT
GTGCAAATTCAACGAGTCATGAAGACGAGAACTTACTGACTTGCCAAAAC
GACAAAGAAGATGTTGAGGATGGAGAATGGAGTGGAAAAGCAACTCTCTC
AGCCATCAACAACACGGCCTGTCTGACTATGACACTCAAACGAGATCCCA
CCTATCATCTCTCCACAACCATCTCTCCCTGCCTCATCCTCATCGTCCTT
ATGATCATCACCTTCATCATTCCCATAGACAAGGGCGATAGGATTGGATT
CGGAGTCACCGTGTTGCTGGCTATGGTGGTGTCGCTCGTGGTCATAACAG
GATTTCTCCCTGTGTCAAACACCCTCCCATTCATAGCTATGCTGATTATT
GTGTGCATGGCTCTGATGGCACTCTTCATGCTGACGACTGTCTTTATCAT
CATCATACACGACAAGAAAGGACCTGTTCCGAAATGGGCACGGACAATCT
TCTTGAAACACTTAGCAAGGGCACTGCTAATGGGAGACCTGACTGAGAAG
CTGACAAAAGAGCCACCAACTGATTACACTTACAGTGGTGTGGCGAAGGT
CGTCGGTGGACACACCAATAACTCTTTCATGTTTGACACAGACGTTCGAT
TTGCAGGAGGCAAATTGCCCCGTAAAATGAAGAATGAGGTCGGAGCTATC
ATTGGTATAAAGCTGGATGAGCTAAATAGTATCGTTAGGCTGAGGCTGGA
TAGAATAAAGCGCTCCATTGATGTTCTGGCAATGGCAACCAGTGGTAACA
ATGAGGAAGAGGTTGCAGAGTACGCTCTGTTGGCTGAAGTCCTCGACAGG
GTGTGCCTGGTGCTCTACATAATCGCCATCGCCGTGGCAGTTCCTTGTAC
TCAGTTCATGAGTCGCAACTGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000190 | genome | Sc0000190:26969..32231 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL96638_cuf1 |
| Biotype | protein_coding |
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