transcript:BL97139_cuf3 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL97139_cuf3
Unique Nametranscript:BL97139_cuf3
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL97139_cuf3

>transcript:BL97139_cuf3-protein ID=transcript:BL97139_cuf3-protein|Name=transcript:BL97139_cuf3|organism=Branchiostoma lanceolatum|type=polypeptide|length=690bp
MAPAACVVMLLLVSGLCVGALRYDTEEEGLLAVEKQAEGEAAKNRRLHLH
WINTHYQVSHSTQCAQLCRLTPDCKSYQYRQGDKRCEINNATMREHPSDA
KIENGWSYYRRQAIAFFGIWNPCNKGGDPCRNGGICTSLLLKTPQTVPNH
CRPICVCPDGFHGDDCEIDVRRKDNPLEWKQHGSSFLKVVTDEVKTYTEA
RAACAEEGAMLAVVKDQETHDLILSLRNMYAQNAKIWIGLNDIDNEGSFI
WEDGSSIGGFNRWLTSQPNNNNNNQDCVGIQNLWNDFNCNVGRGYVCQKR
MYEWYRVKVIGSSGTPWGDDALYHAARTLDNNPETYWNPVRLDQHFNNWF
IIYDIEETRTLSKISLTNYGDTIHDVKAFKLQTSVSCELPAWTDVLTVTD
VAGGTNTTQEFTGFTGDSRYWRVVITETHSGWPPFLVGTGFPEVPTVKSY
HTCQTIATKSGGEVRNPLYPKRSSYSCEALVTVQGQQLVELTFGSPFTVE
HHPECRFDYVELFDYVGDKWESIAKLCGRSRPGDVIRSRGNAVKVVFHAD
DSIPSSFSLSWQPIYAYAGSDSTGVEGCSALYVTACDSPLGMESGAIPDA
NISASSQHSSGGCRIVDGRLNRARGIGWCALHNLRGQWLQVDLGHATVSG
VVTQGRTTDQYVTSYKLLFSDDGTTWETYKDTDGTDKVFA
Run BLAST on NCBI

mRNA from alignment at Sc0000332:40708..46973-

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL97139_cuf3 ID=transcript:BL97139_cuf3|Name=transcript:BL97139_cuf3|organism=Branchiostoma lanceolatum|type=mRNA|length=6266bp|location=Sequence derived from alignment at Sc0000332:40708..46973- (Branchiostoma lanceolatum)
CATACGTTTCTGCTCAGCTACCTACACCAAAAGTTGCAGCAATGCATTAG
CAAACTCATGTAACGAAACGTTCAATCGACGAAAATCTGCTGGTATGTTC
TAATGATACAACAAGGTGCGCCTTTTGTCGTGCAAACTGATCTCTTGTAC
GTGGTATACAACATCTTCACCTACCCGCGGAGTGCTTGGTTGGAGGGCGG
TAAGACGGCATGGCCCCAGCCGCCTGTGTTGTGATGCTCCTCCTGGTGTC
GGGACTGTGTGTCGGTGCGCTGAGGTACGATACTGAGGAGGAGGGGCTAC
TGGCCGTGGAGAAACAGGCTGAGGGGGAAGCCGCGAAGAACAGGCGGCTA
CATCTGCACTGGATTAACACCCACTACCAGGTAGGTCTGTTGGTGATGCT
TCATAACAAATGTTATCCGCATTCAAATTATAGACTATGAGAATATACTA
CTAACGTTATGAATTATATCAGAGTCGTTATACAACAACAGAAGAAAAGT
CATTCTAATCTATCAATCAACAACAGCCAAAAAGTCAGATTTGACAACAA
ATGAAACAAAATCAACATAATGACAATATCTTGCACCTGTTACATGTTTT
TTTTATTATAGCACGGCATTGAACCGAAACTATAATTACAACTTTGTCAA
TTTTCTCAAATTTGCAAAGTCATTCTCAAGCAATAGAGCTCACAGATGAT
TTCATTTCTTATGAAAATTTTCACATTTTGTCGTTCTTTCTTTCTACACT
CTTGTCGTACTCTCCAGGTAAGCCACTCAACCCAATGTGCCCAACTCTGC
CGCCTTACCCCGGACTGCAAATCCTACCAATACCGCCAGGGGGACAAACG
CTGTGAAATCAACAATGCAACAATGAGAGAGCACCCTTCAGACGCCAAAA
TCGAGAATGGGTGGAGCTACTACCGACGTCAGGCAATTGCATTTTTTGTA
AGTCATATTCAAGTGGCATAGTGTTGAATACAATCGCTTTGATATTGGCG
TGACCTATTTAATGTTTGCTATTCTATTATTAAAAACAGTTGGCTTAGGG
TAGCAATTTCGCTTAATCTACACAAGCTTTGTCAATGATATATCCTATTT
TTCAAACTCCCAACAGGGCATTTGGAATCCCTGTAACAAAGGGGGCGACC
CCTGTCGGAACGGAGGGATCTGCACCTCTCTCCTTCTGAAGACGCCGCAG
ACCGTCCCGAACCACTGCCGTCCAATCTGCGTCTGTCCGGATGGTTTCCA
TGGAGACGACTGTGAGATAGACGTACGACGTAAAGGTGAGGGACTAATTA
CATGTTATCAAGTCGCATGGAAGCATTGACGATTCATCATCTAAAGCACA
GCTTGTTCAATGCTTCCTCGATATCGATGATTCAGCGCATCCACCTAAGT
CCACGCGACGCTATAGACCGATCCCAAAGCCACGCCCCCTGTTCGCTTTC
GAACACCTCCGTCAAAAACAGGGTTTGACGGACCAAACATGGCCGCCGCG
CTAGCTTCAAAATAATGCCACTGACTTCGGTTTAGCTTTTGTGGCACTGA
AACCCTTTCAGAGCGGGCCGAATAAGAATGCTATGTCTTCTTTGTTGAAT
GCTGTATCCGCCGGGTAGAGTTGTTAAAGAAGGGGGTAGGTTAAGTTGCG
GTGAGAGCGTAATGTTTTCGGTCAATGTTAAAGCGGTATGCGCCGCATAG
CTTTCCCTTGTCGGTGGGTGCACGTGTAAAACAGGGTTAATATATCTGTG
ACAGGGTTCCCACTGTATTGAATGCATGCATAACAGCTGCATGGTATTTG
GTAACATTTAAAATGCATCCTTTCACTTCCCTGTTGACTTTCAAGTTAAC
CAGTTTCACACACCAGTAACTGAAGATACGAAACTCTGCGCTAGCGGACT
TTGTAGTAGTCAGTATGTGGTACACAAGCTTCCTCTCCTTGAGTGCCCGA
ATAGAACAGGGGGTTTTATGGGTCTTCTATTTGCTCGATATGGTGTTCGA
CAGGATCGGTCTATTGTACCGTGGTGCGCTATAATTATCAGCATCTACAC
CTATCACATAATAAGACTATGACTTATAATCTGACATAAATGTCAAAGTT
ATGAGAGAGGGGGAACCAGTCTAGTCATATCTAGAACGGGACATTTTCCA
GAGATCATTGTTAAAAACCTATTGGAAAGATATTCAAGCTTTTTCGTCAG
ATTCGTTTGAAAATTAATCGAAACTGTATCTGTTCCAAAATTTACGCTAT
GAATACAGGCAGCATTACTGTAATTCATAGCGAGATGGTATAATTTTCGT
GCACAATATTAAAACATATGTTTTATAAAAATATCTTCTTCATTTGGTGT
TGATATTGATAGCTTACTTTTTTTTAGATAACCCACTTGAATGGAAGCAG
CATGGGTCGTCTTTCCTCAAGGTCGTGACGGACGAAGTGAAGACGTACAC
GGAGGCGCGGGCTGCCTGTGCCGAGGAGGGGGCCATGCTTGCCGTAGTGA
AGGATCAAGAGACTCACGACTTAATCCTTTCTCTCAGAAACATGTACGCG
CAAAACGCCAAGATCTGGATAGGGTTGAACGACATTGACAACGAAGGCAG
TTTCATATGGGAGGACGGCAGTTCAATTGGTGGATTCAACCGATGGCTTA
CATCGCAGCCTAACAATAACAACAATAATCAAGATTGTGTTGGAATACAG
AATTTGTGGAACGATTTCAATTGCAACGTTGGACGAGGCTACGTCTGTCA
GAAAAGTGAGATGCCCCCCCCCCCCCAAAAAAAATCTTTTTCTTTTATCA
TGAATAAACTTTTAAGGCGCTTGTTACTCAGGCGGTCAGTATTTATTGAT
AACTTCACTTGTTGAATTGTTATATGTATTTTAGTAATTTGAAATAATAA
CATATGTAGTGTTTACCTATGAAAGATGATAGAAAATACATGCACATGTC
CTTCAAAGATTGTTTTGTTATAATCAGGAATGTTTCGTAATCAAAACACT
TTAAGCTAGTAGTTAATTGCGTTGGTAGAATGAGCCTGTCTAATCCTGAA
TACATGTAAATGCCCACTATCCTGTCACAGGAATGTACGAATGGTACCGA
GTGAAGGTGATTGGTTCATCGGGAACTCCCTGGGGTGACGACGCCCTGTA
CCATGCCGCCAGGACACTTGACAACAACCCGGAGACATACTGGAATCCGG
TCCGCTTGGATCAGCACTTCAACAACTGGTTCATCATCTACGACATCGAG
GAGACCCGCACGCTGTCTAAGATCAGTCTGACGAACTACGGAGACACAAT
TCACGACGTCAAGGCGTTCAAACTGCAGACGTCAGTCAGCTGCGAGCTGC
CCGCCTGGACGGACGTCCTGACGGTCACTGATGTGGCAGGCGGTACCAAC
ACCACGCAGGAGTTTACCGGGTTCACGGGGGACTCTCGGTACTGGAGGGT
GGTCATCACGGAGACGCACTCAGGCTGGCCACCCTTCCTGGTGGGAACGG
GTTTTCCTGAAGTACCGACAGGTGATTATTTCATTTAACCTAACCCCTTA
CTACTCAGGTTTGGCATTACGTATATGTTGCAAAAGTTAAAAATGATCTA
TTGGTTTAAAGGCACAGTAATACTTATCTATGCATTATCTAAGAGTCTAT
TGCTGATGAATGACATAGTCTTACGTTTTTATCCCAGTGAAAAGTTACCA
TACCTGCCAGACCATTGCTACAAAGAGTGGAGGTGAGGTGAGGAACCCAC
TGTACCCAAAGGTACGAGACTACATTGTACATGTAGTTATGCAGTTTTGC
TGCCCATTTTCACATACTATTAGTTGCTGGCACATTGACATTGTGTATAA
GAGAAACTTTCGGAAATAGCTTTTATCCCTATATTTTATCTTTAAGTTAG
TTTGTCTCGTTGATATGGCTTCTCTGTCACATCTCATAGTTTCCCCACCC
GTTTCTGGTACATCGTGTATAAGGCAAACTTTCAGAAATAGCTTTTATCT
TTTATCTTTAAAGATGTTTAATGACAACGTCCCGTTATTTTCCCAGCGGT
CCTCCTACTCCTGCGAGGCCTTGGTGACCGTTCAAGGCCAACAGCTGGTG
GAGCTGACATTCGGCAGCCCTTTCACCGTGGAACATCATCCAGAATGCCG
CTTTGACTACGTGGAGGTCAGAAATGCTTTTCATCTGTGCTTTTCACCTG
TATTTTTCCGGTGAATCGGCCCTCTTTATGCTCCCTCTTCATCTTTGTAT
TTTGAATGTACTCTCAGACCCTAGACCCCACCAGGCCACCGATCTTTAAA
AGGAAACACATGTCTTAAGAACAGGGTACATAGGTTGAAGAAAACATGAA
GAGACCTAGCCTTTCGTGTTGGATGGCCATCAGGATGGAAAAAATATCAA
GCTATCCTGTATCAGGACTTTGATTCATGAATAGGGCAGAGACCTCCTAT
TCTGGGGAAATGAATAATAAGGCATGGTGTCTTCATTTCCTAGCTGTTTG
ACTATGTAGGTGACAAGTGGGAGAGTATAGCGAAGTTGTGTGGCCGCTCC
CGGCCTGGTGACGTCATCCGTTCCCGTGGAAACGCAGTGAAGGTCGTGTT
TCACGCAGACGACAGCATCCCTTCTTCGTTCTCTCTTTCCTGGCAGCCAA
TATATGCATATGGTAAGTGCAAAATGCAATTCGAAGGTTTCTATGGCATG
ACTTATTCCCTGCATCGAAATGAATTAAGTAAACATGATGAAGATTTTCA
ATTTTTACCTGCTAGAAAGTGCTGTGGAAATTCCAAGCTCTCTTCATATA
TTTTCAGCGGGATCGGACAGCACAGGCGTGGAAGGCTGCAGCGCCCTCTA
TGTGACAGGTAAGAGATTACATCTGAAGGATTTTAGAATTGAAATGTCAA
CATCTAAGAATGATTTTATCTACAGTTCTTCAGTAAACCTTTTCATCTCT
TCCTTGAAGTTCTGAACATCATGATGCTACGATAGGGCCTAGATGTCGAG
TTTGACTATGCCCGTGACACTCAAAGAGCGCCATTTCGAACCTGAAATAT
CAACTAGCTAAGACAATGTGATTGTCCGTGTCGTTAGAATAAAGCAAAAA
AGCTGAATGCATCAATTGTCAATACACGATTTATGTTGATGCGTTTTAGT
ATTTATTTCATAGCTTGCGACTCACCCTTGGGAATGGAGTCAGGAGCCAT
CCCGGACGCTAACATCTCAGCGTCGTCTCAACATTCCAGTGGAGGATGCA
GGATTGTCGACGGTCGGCTGAACAGGGCTAGGGGTATTGGCTGGTGCGCT
CTTCATAACCTCCGCGGTCAGTGGTTACAGGTGCGTACAGGGCGTCACTA
ACGTTTAACTCTTTCACGTTCCAAGCTGGGAAATAATGATTTCCATGATC
CAAGTGATCGTCAAATATTTTGTTCCACATAATCAAGGAAAAGTGGCTAG
CAGGCAACAATTTTCTGTGTTGAAGCTAACACTAGCTACATGTATGCCAC
ATACTAAACACAATCAAGAATGGAATATGTATTTTATATCGTAAGGGTGC
CTTCTGGCCCAAGGCAAGTGCAATGATTAGACAACGTGCTGATTTAAAAT
CGCGCAAACTGAATCCTGTCTGTTAACTTGATATGAATTCTATGTCACAT
CTAATCTAGGTTGACCTTGGCCATGCAACTGTTTCCGGGGTCGTAACCCA
AGGTCGCACCACCGACCAATATGTGACGTCATACAAGCTTCTGTTCAGTG
ATGACGGCACCACCTGGGAAACGTACAAAGACACAGACGGCACAGACAAG
GTGTGGTTATTTCACATAATATCAATATGTGGATGAATAAGTAAAGACCT
TTATTCTACTCTACTCTACTCTACTCTGCTCTGCTCTGCTCTGCTCTGCT
CTGCTCTGCTCTGCTCTGCTCTGCTCTTCAGCTCTACTCTACTCTACTCT
ACTCTACTCTACTCTACTCTACTCTACTCTGCTCTGCTCTGCTCTGCTCT
ACTCTACTCTACTCTACTCTGCTCAACTCTGCTCTGCTCTACTCTACTCT
ACTCTTCTCTATACTCTACTATACTCTATACTCTACTCTACTCTATACTC
TACTCTATATTCTGCATCTTGCCCCATTCAGATATTAAAATAGGTCACAA
AGAAATGTGAAGCAATCACGGCCATTAATGACTTCTAATTACGTATATGA
CGGCAGTCTGTACTGTTCAGGGTTTTTGTTCACCAGTTATGAACTGCTCT
GTCCAGGTATTTGCAG

Coding sequence (CDS) from alignment at Sc0000332:40708..46973-

>transcript:BL97139_cuf3 ID=transcript:BL97139_cuf3|Name=transcript:BL97139_cuf3|organism=Branchiostoma lanceolatum|type=CDS|length=2070bp|location=Sequence derived from alignment at Sc0000332:40708..46973- (Branchiostoma lanceolatum)
ATGGCCCCAGCCGCCTGTGTTGTGATGCTCCTCCTGGTGTCGGGACTGTG
TGTCGGTGCGCTGAGGTACGATACTGAGGAGGAGGGGCTACTGGCCGTGG
AGAAACAGGCTGAGGGGGAAGCCGCGAAGAACAGGCGGCTACATCTGCAC
TGGATTAACACCCACTACCAGGTAAGCCACTCAACCCAATGTGCCCAACT
CTGCCGCCTTACCCCGGACTGCAAATCCTACCAATACCGCCAGGGGGACA
AACGCTGTGAAATCAACAATGCAACAATGAGAGAGCACCCTTCAGACGCC
AAAATCGAGAATGGGTGGAGCTACTACCGACGTCAGGCAATTGCATTTTT
TGGCATTTGGAATCCCTGTAACAAAGGGGGCGACCCCTGTCGGAACGGAG
GGATCTGCACCTCTCTCCTTCTGAAGACGCCGCAGACCGTCCCGAACCAC
TGCCGTCCAATCTGCGTCTGTCCGGATGGTTTCCATGGAGACGACTGTGA
GATAGACGTACGACGTAAAGATAACCCACTTGAATGGAAGCAGCATGGGT
CGTCTTTCCTCAAGGTCGTGACGGACGAAGTGAAGACGTACACGGAGGCG
CGGGCTGCCTGTGCCGAGGAGGGGGCCATGCTTGCCGTAGTGAAGGATCA
AGAGACTCACGACTTAATCCTTTCTCTCAGAAACATGTACGCGCAAAACG
CCAAGATCTGGATAGGGTTGAACGACATTGACAACGAAGGCAGTTTCATA
TGGGAGGACGGCAGTTCAATTGGTGGATTCAACCGATGGCTTACATCGCA
GCCTAACAATAACAACAATAATCAAGATTGTGTTGGAATACAGAATTTGT
GGAACGATTTCAATTGCAACGTTGGACGAGGCTACGTCTGTCAGAAAAGA
ATGTACGAATGGTACCGAGTGAAGGTGATTGGTTCATCGGGAACTCCCTG
GGGTGACGACGCCCTGTACCATGCCGCCAGGACACTTGACAACAACCCGG
AGACATACTGGAATCCGGTCCGCTTGGATCAGCACTTCAACAACTGGTTC
ATCATCTACGACATCGAGGAGACCCGCACGCTGTCTAAGATCAGTCTGAC
GAACTACGGAGACACAATTCACGACGTCAAGGCGTTCAAACTGCAGACGT
CAGTCAGCTGCGAGCTGCCCGCCTGGACGGACGTCCTGACGGTCACTGAT
GTGGCAGGCGGTACCAACACCACGCAGGAGTTTACCGGGTTCACGGGGGA
CTCTCGGTACTGGAGGGTGGTCATCACGGAGACGCACTCAGGCTGGCCAC
CCTTCCTGGTGGGAACGGGTTTTCCTGAAGTACCGACAGTGAAAAGTTAC
CATACCTGCCAGACCATTGCTACAAAGAGTGGAGGTGAGGTGAGGAACCC
ACTGTACCCAAAGCGGTCCTCCTACTCCTGCGAGGCCTTGGTGACCGTTC
AAGGCCAACAGCTGGTGGAGCTGACATTCGGCAGCCCTTTCACCGTGGAA
CATCATCCAGAATGCCGCTTTGACTACGTGGAGCTGTTTGACTATGTAGG
TGACAAGTGGGAGAGTATAGCGAAGTTGTGTGGCCGCTCCCGGCCTGGTG
ACGTCATCCGTTCCCGTGGAAACGCAGTGAAGGTCGTGTTTCACGCAGAC
GACAGCATCCCTTCTTCGTTCTCTCTTTCCTGGCAGCCAATATATGCATA
TGCGGGATCGGACAGCACAGGCGTGGAAGGCTGCAGCGCCCTCTATGTGA
CAGCTTGCGACTCACCCTTGGGAATGGAGTCAGGAGCCATCCCGGACGCT
AACATCTCAGCGTCGTCTCAACATTCCAGTGGAGGATGCAGGATTGTCGA
CGGTCGGCTGAACAGGGCTAGGGGTATTGGCTGGTGCGCTCTTCATAACC
TCCGCGGTCAGTGGTTACAGGTTGACCTTGGCCATGCAACTGTTTCCGGG
GTCGTAACCCAAGGTCGCACCACCGACCAATATGTGACGTCATACAAGCT
TCTGTTCAGTGATGACGGCACCACCTGGGAAACGTACAAAGACACAGACG
GCACAGACAAGGTATTTGCA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL97139gene:BL97139Branchiostoma lanceolatumgene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL97139_cuf3-E1BL97139_cuf3-E1-1564476830-439815Branchiostoma lanceolatumexon
BL97139_cuf3-E2BL97139_cuf3-E2-1564476830-439812Branchiostoma lanceolatumexon
BL97139_cuf3-E3BL97139_cuf3-E3-1564476830-439810Branchiostoma lanceolatumexon
BL97139_cuf3-E4BL97139_cuf3-E4-1564476830-439808Branchiostoma lanceolatumexon
BL97139_cuf3-E5BL97139_cuf3-E5-1564476830-439806Branchiostoma lanceolatumexon
BL97139_cuf3-E6BL97139_cuf3-E6-1564476830-439804Branchiostoma lanceolatumexon
BL97139_cuf3-E7BL97139_cuf3-E7-1564476830-439802Branchiostoma lanceolatumexon
BL97139_cuf3-E8BL97139_cuf3-E8-1564476830-439800Branchiostoma lanceolatumexon
BL97139_cuf3-E9BL97139_cuf3-E9-1564476830-439798Branchiostoma lanceolatumexon
BL97139_cuf3-E10BL97139_cuf3-E10-1564476830-439796Branchiostoma lanceolatumexon
BL97139_cuf3-E11BL97139_cuf3-E11-1564476830-439794Branchiostoma lanceolatumexon
BL97139_cuf3-E12BL97139_cuf3-E12-1564476830-439792Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL97139_cuf3transcript:BL97139_cuf3-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000332genomeSc0000332:40708..46973 -
Properties
Property NameValue
Transcript idBL97139_cuf3
Biotypeprotein_coding