transcript:BL86815_cuf0 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL86815_cuf0
Unique Nametranscript:BL86815_cuf0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL86815_cuf0

>transcript:BL86815_cuf0-protein ID=transcript:BL86815_cuf0-protein|Name=transcript:BL86815_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=99bp
MLVDCMLASCQPWIWWTYLPILLLAFFRYIGQPRTCLGCGQEGHESSGFK
VIFCNKCQSAGQLSIDCTNDVVRNICGAEVHTSRRCQLSFANKIQLGSS
Run BLAST on NCBI

mRNA from alignment at Sc0000339:241171..242365+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL86815_cuf0 ID=transcript:BL86815_cuf0|Name=transcript:BL86815_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=1195bp|location=Sequence derived from alignment at Sc0000339:241171..242365+ (Branchiostoma lanceolatum)
CTCTACTCTACTCTACTCTTGATCGCTGTTTAATTTATTTAACGTTGTAT
GATATAGTTTGATCAAGGAGGTTGGTTTGATAAAGATTAAATACCACGTC
TTCGGACAAGACGCTTCGGTTAGCAGCTCTTTTAAGTGTACGGTTTTTGC
TAGCCTGTTTGCGCTACGTACATTTTATCCAACATGAAGCGAGATTGCTC
TATCTGCGTCACCGTTAAAAAAGAACGCCTAACGGTCGACGAGGTGTGTT
AACCGTACTAAGCGAGGCCTCGGTGCCCATGGACGGTCTCCAAGCTGTAC
CAGCCATGGGGCCAAACTCGTTTGACTTAACTTTCCCTTCGTTACATGCT
CGTCGATTGTATGCTGGCAAGCTGTCAGCCTTGGATTTGGTGGACGTATC
TGCCTATACTTTTGCTCGCGTTCTTTCGGTATATAGGCCAACCCCGCACC
TGTTTGGGATGTGGCCAAGAGGGCCACGAGTCGTCTGGCTTCAAGGTTAT
TTTCTGTAATAAATGCCAGTCCGCTGGACAACTGTCCATAGATTGTACCA
ACGACGTTGTGCGTAACATTTGCGGTGCCGAGGTACACACGTCCCGTCGC
TGTCAATTATCCTTCGCAAATAAAATCCAATTGGGGTCCAGCTGATCCAG
AGACCGTGAGCCCCCAGTTGTTGCTCGTTCTGATCCCGTGGTCAAAGACT
GGGAAATTTCATTCCCATTCTGCGGCCGGTCGCTAGTCTGACTCGGTGGC
CGAAAGTTCCGACGATGAGTTGATCTCCTCTGACACCGTAACCCCTCCTG
GTCCCGTTGTGGCTGAGGCATCGAAGGTCGTTCCGTTGATGACTACAGCT
TTACCAACGAACGATAGCCTCAAAGGCCTTCATGATCACCGACGAAGAAC
ATCTAAAAACTTCTCCCCCTCCATCCAATTAATTACGGCATGTTGACATT
ACCAAAAAATACCTCCCAAGAGGCGTAGAGATCCAGATGACCATTGAATA
TTGACTGGGCGATCTAATCTGTCCCTACAACTCCCCAGCCACAGCTCTTC
ACACTTACCAAGGTTAAGCTAAAACCCGGACCACTTACTATAAAAATCAA
TGACAGCTAAAAGACGATGAATAGAATCATCAGTGGTAACAATAGACAAA
TTGTTATCAGCGTACTGTGAGAGTGTAATTTCATGACCACCAGGC

Coding sequence (CDS) from alignment at Sc0000339:241171..242365+

>transcript:BL86815_cuf0 ID=transcript:BL86815_cuf0|Name=transcript:BL86815_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=300bp|location=Sequence derived from alignment at Sc0000339:241171..242365+ (Branchiostoma lanceolatum)
ATGCTCGTCGATTGTATGCTGGCAAGCTGTCAGCCTTGGATTTGGTGGAC
GTATCTGCCTATACTTTTGCTCGCGTTCTTTCGGTATATAGGCCAACCCC
GCACCTGTTTGGGATGTGGCCAAGAGGGCCACGAGTCGTCTGGCTTCAAG
GTTATTTTCTGTAATAAATGCCAGTCCGCTGGACAACTGTCCATAGATTG
TACCAACGACGTTGTGCGTAACATTTGCGGTGCCGAGGTACACACGTCCC
GTCGCTGTCAATTATCCTTCGCAAATAAAATCCAATTGGGGTCCAGCTGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL86815gene:BL86815Branchiostoma lanceolatumgene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL86815_cuf0-E1BL86815_cuf0-E1-1564476830-442218Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL86815_cuf0transcript:BL86815_cuf0-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000339genomeSc0000339:241171..242365 +
Properties
Property NameValue
Transcript idBL86815_cuf0
Biotypeprotein_coding