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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96257_cuf0 >transcript:BL96257_cuf0-protein ID=transcript:BL96257_cuf0-protein|Name=transcript:BL96257_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=668bp
NYFNVLQTVILLSTGCLNEDYVRFNGVCYKYFALSKTYSQARQTCAADGG
MLAMPKDSETNTFIAGLGNGDGARWIGLTDAASEGQWLFEDGQTLESTGF
SNWDNGELDGGTAENCNAFGWTGSAWNDVRCSRSIRFICQIDQVAAQTTT
ALPSSTTRTTIMTTSTAATTTPVTTTTAATTTPLTTTAATTTPGTTTPVT
TSAATATPVTTTTATTTPGTTTVAITTPETPTTATFTPGTITAATTTPGT
TSAAPTTLEATTVATTTPETTFAPTTSPTTSTAATTATVPATTTSASTPG
TATSNTAADITGTTHVTTAPTTTATSADSISAASTTSTAATTSTAATAAT
APQSGTSQATVMRTSLPGVMSPSPGESTSGATTGCPPGYAPFGGSCFKAY
NKDKTYNQARQVCAADGGLLAMPRDKDEDNFLRDLKNSVDPNSPFWFGLS
SQKSEGGWVWEDGTPYNTAADRQYGGWQLGEPSNKGGGGGVCANHFETGW
NDAPCSSAQKFICQLNGAVRCPLGYLRCGHGHACILAWKRCDGRTDCSDA
SDEEGCECGPIPADFNLGGRLAMLPNQLGQMMFEEIQNSSVVELLNNPAS
NAENQHPEFREFASTVIFPRCAVSEENNTSCTLSQHADNTTRCMDTQLLP
CRSWCEEVNKADGRMKNR Run BLAST on NCBI mRNA from alignment at Sc0000381:105335..111273+ Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96257_cuf0 ID=transcript:BL96257_cuf0|Name=transcript:BL96257_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=5939bp|location=Sequence derived from alignment at Sc0000381:105335..111273+ (Branchiostoma lanceolatum)
AACTATTTCAATGTATTACAAACTGTCATTCTTCTCTCTACAGGGTGTTT
AAATGAAGACTACGTTCGTTTTAACGGAGTTTGCTACAAGTACTTTGCTT
TGTCGAAGACGTACTCTCAGGCCCGACAGACGTGTGCCGCAGACGGGGGA
ATGTTGGCCATGCCGAAGGACAGTGAGACCAACACTTTTATCGCCGGACT
GGGAAACGGAGACGGAGCGCGCTGGATTGGGCTTACTGACGCCGCCAGTG
AAGGCCAGTGGTTGTTTGAGGACGGCCAAACCCTGGAGTCAACCGGCTTT
TCCAACTGGGACAATGGCGAACTGGATGGTGGCACTGCTGAAAACTGTAA
CGCCTTCGGGTGGACTGGGTCCGCGTGGAACGATGTGAGATGCAGCAGGT
CGATACGATTCATCTGTCAGATAGATCAAGGTGTGCGTTATATTCACCGT
CGTTATCATAATTACTTATAAGAACATTCTAACATTATCATCCCTGGGTC
AGTATGTATGCATTATCATAGTGGTAAGTTTGTTTCCAGCTCCCATATTT
ACCTGCTAAAACTGATATGCTGTTTAGTAAATACTTTCGTTGTTAACATG
TTCTCTCCTCCCTTTGGCTGTTTTCTAAGCAGTTTTCCCTTACTGTTTTA
CTTTGGATCTCATTTCATTTTATCTTATTACGTGCAATTTCTGTCTCTTT
TCTCCTCCCTCGTTCAAATCGCTACTTGTCACGAATGGTGAACAGTTTAA
ACACTTTACAAGGACATTCGCATGTACGACCTGTGTTATGGTTGACTAGC
GATACTTTCCAAGCAGAGGTTCGGCTCCGGCTGGTTTTTGACGTGTTGTT
AGGTGTTTTTGTTGGGATTTATGTTTTTCTCGTTTTCTTTATGTCGCAAA
GCTGAACAAGCCAGAGCCGAAACTCTGCCTGGACAGTAGATTTTATTAAG
TAAATATATATGACATTGTGATATATACTTGATGTGGGCTGTTCGTTTCT
TGTGACACGATGTGCCGTATGTGTAACTTCATCTCTCATAATTCTACCAC
AAAATTAAAAAAAAGGAATTTAAATAGATATCATGGTGCAGCATCAGTAA
TCCCTGAGGGGATATGCATACTGCAGATATTCAGGTCTTCAAGACATTTT
TGAGAATGCCTTAATAACACCGTTTTCTACAGAATGATGTAGCGGTCTGT
ATGATTGTCTTCTCAAATATTTCATTTTCCGTATTGAACAATTGGCGGCG
AGAATAGGCGTTGCATGTGACTTGCGTCCGCCGTCACTTTGTCTTGTCCC
TTTTGTATGTTTGATGTTTCTGTGAATAAAAAACGAATAAAAAAAGAAGA
TGTAGCGGTGTGAGTGTAGCCAGCGGACTTATGTGAATTGGGGCTTAAAT
ATTTGCTATAACAGGCCTCAAATAACCATTTTATGTGTCACTAACTTTAT
AGACTGATGCAGGTTAATAACATGTTTGACTATCGAGATAAACATAACTG
GCCCGTCTTTCAATGTGGTTGGGCTTGGCGAGTTGGCAGCCTCGACAGAG
CTTATAGAAATACACAGGAGTAACAACGGGTGTGTCCATGCTTTTATAAT
TAATGCATAGTAATGTACTTCTTTTTATCAGGAACCTGTCAAAACAGAGG
AACTGTAACAACACAAAACTATTTATAGATAACGAGCTTTTTTCAAGACA
TCTAAGGACCAACTCCTTGTCTTCACAGCTCAGTGTCAAGATCAACTCTA
ATAATCTCTATTCTTTAGGATTTTTCTAATGAAACTACTATCACAGCAAA
TTTTTCTAAAGAAACTAATGTCAATTCACTTTCCATTGTTATAATGAAAA
AGAAATCAATACAAGAAAACTGTGCTCTGTTTTCTGCTGGCAACAGGTGT
ATTTTACAGAATATCTGTAATGTCATATTACCTGCGTGACTAATGATATT
TCCTGTGTCATGAAAACACCGTCTGATGAATAAATTATTACTCCGAATTG
TCCTGGCCCGTCTTTTGTGAAGGGATCACGAGCTCGAGACGGGTCGTTTT
GTGTCTGTCTGTCATTAAGAAAAATTACACTGAGTTACACTCCTTTGTTG
TAAAACACGCATCATGATGACATTGTTGAAAACTATAATTTCGGAATTTC
ATGTTGTTCAGAGTTTGTTTCTGTTCACGTCCTTTATGTACTGAATATTT
TGCTGGATCAACAGTAGCCTCACAAATCCAACAAAATTACTGAGCAAAAA
GCTGAGCTTACCACATAGTTTCTAGAAACAAAACAAACCGTAGAGTAAAA
GGTTTTATAAGACATGCAAGAATCATATTCCATGTCGGACCATGGAAAAA
TATTTAGAACTAACTTAAACATGATTTGAATTATGCTCTGCAATCAGCAA
AATTAGAATCAATGCCCACCCTCTTGAACTAATAAAATTGCGGTACAAGA
ACTGATCTGTGTTCCATAGAACTTGTTAATCCTGCATGTGACGGTGGAAG
ACGAAACACATTTTAATTCAAATTGCTCTTTCAACGATCACAAAAGAAAG
GAGCTGTTCAAGAAGCCACCAAACTGTATCCTAATTTCTCCACGTTTACA
GACAAAAAACTACTCTCCTCTTAACATCACAAAACCCAGACATTACAGCA
AAAGCCCACGGGATCATTCGTCTTCGATTGTCTCTGAAAAAGAAGAAGTT
AAATCCAATAAGTTAGAATCTACATGTATGATGTAGTGTCAGTATTTAGA
CGAGAGAAGTCACATGCTATAAAATTGTTCCCTACTGTCTGTCCTTCCTT
TCCATGTTACATGTATTTGTAACTAGTCTCCAGGCAAGAACTTGCAATAA
AATTTCACAATATNTACATGAATTTGTAACTAGTCTCCAGGCAAGAACTT
GCAATAAAATTTCACAATATGTGGAACTTCTAAATTCAAAGAGTTTCCTT
CCTATCACAAACTAGGATATAACTCAAGCCAACTCACGAACGAAATAGTT
TCATCAGGTTGGCTAAAGAAACTCCAAATATCCTTTAGCCAACTCAGTTT
TTCATGCATGCATTACAAAACATGTGAACAACATTTCCCTCAAATGTATG
TGCGGCTGGTCGATGTCATCGTTTTTTTTTCCAGTTGCAGCCCAAACAAC
CACAGCTCTACCTTCATCCACTACAAGAACCACAATCATGACAACTAGTA
CTGCGGCCACTACTACTCCTGTAACTACTACTACTGCGGCCACTACTACT
CCTTTAACTACTACTGCGGCAACTACTACTCCTGGCACCACTACTCCTGT
TACTACTTCTGCGGCCACTGCTACTCCTGTAACTACTACTACGGCCACTA
CTACTCCTGGAACTACTACTGTGGCCATTACTACTCCTGAAACTCCTACT
ACGGCCACTTTTACTCCTGGAACTATTACTGCAGCCACTACTACTCCTGG
AACTACTTCTGCAGCCCCTACTACTCTTGAAGCTACTACTGTTGCTACTA
CTACTCCTGAAACTACTTTTGCACCCACTACTTCTCCTACTACTAGTACT
GCTGCTACTACTGCTACTGTTCCTGCAACCACTACTTCTGCTTCTACTCC
TGGAACTGCTACTTCTAATACTGCTGCTGATATTACTGGCACCACTCATG
TAACTACTGCTCCTACTACTACTGCAACTTCTGCTGATTCTATTTCTGCT
GCAAGTACTACTAGTACTGCTGCTACAACTTCTACTGCTGCAACTGCTGC
TACTGCACCACAGTCTGGTACATCCCAAGCGACAGTCATGCGCACCTCGT
TACCAGGAGTGATGTCACCATCACCGGGGGAAAGTACTTCAGGAGCAACA
ACAGGTGAGGTTAATGCACATTTGACAACATTGGTGAAGGCTTGGCTAAG
ACAGTGACCAAAAGACAGGTTACTCTTCATGACACTTTTGAAATGTAGAC
TGAGACAACTGATAAGGGATTATGTATGGTGACCATACCATGGTACATAC
GTTTACCCCAGGAAAGGCCACAGTAGGAGGCGCTTCCTAAGTCCTATACC
CATGACAAAGCAGTCTCATCTTTAATGTTTTTTATAGGTTGTCCTCCTGG
CTACGCTCCATTCGGGGGTTCGTGCTTCAAGGCGTACAATAAAGACAAAA
CCTACAACCAGGCCAGACAGGTGTGTGCAGCGGACGGAGGGCTTTTGGCC
ATGCCGAGGGACAAAGACGAGGACAATTTCTTGAGGGACCTGAAGAACAG
CGTGGATCCCAACTCCCCTTTCTGGTTCGGCCTGAGCAGTCAGAAAAGCG
AGGGTGGTTGGGTGTGGGAAGACGGGACTCCATACAACACAGCCGCAGAC
CGACAGTATGGGGGATGGCAGCTGGGGGAACCCAGCAATAAAGGAGGAGG
GGGAGGAGTCTGCGCCAACCACTTCGAAACTGGATGGAACGACGCGCCCT
GCTCGTCTGCGCAGAAGTTCATCTGCCAGCTGAATGGTGGTATGTCATTT
AACAATATATAGTTACACATTACATGCGCACAACACAATCAGACAATGTC
TATATTGTTTGCAGTTAGATGCTGCAATATCTACTGTTGTGTCTTTTGAT
TTGTGAAAGGTATAAGCAAGTTTCACCAAAAGGGCTAAAAATACTGGGTG
AATGAGTTCATTCTGGTTTAAAGCTTATAATTAGATAACATGCTTTTCTG
CAGATAGCAAAAGGAAGAACACAAATAACAGGTTGTTTCTCTACGCAGCA
GTCCGCTGCCCCCTGGGGTACCTCCGGTGCGGACACGGACATGCCTGCAT
CCTGGCCTGGAAGCGCTGTGACGGGCGGACGGACTGTTCAGACGCGAGTG
ACGAGGAAGGTTGTGGTGAGTTGGGCTCACATCTTAGCCGTACGTGCGTT
TGCTTATAACATACTATTAGTACCTTTATATCTAGTAGAAATCATTCTTT
CCACCATTGGCATAGATGCTTAGAAAAGGTCTTGATATTTATTATTTCAC
TCCAGCTCTCATCTAGCTGAGCTCTATATTATTAATCACTCAACTTTGGT
TTATGTGCCCATTAACCTTCAGTGGCTTTTCAACTGTCGTGACCTTAAAG
ACTGATAAATCAAGAGCACAAATAAAACATGCTTTGAAGCTGCTGCAAAT
TGATCATTCAGTGCTACTGTGCACATGGGAAATAATTGCTCAATAAAGAA
GACTATTTTTCTTGCAAACAAGTGTAATGGTTTTGGGCAGATTTTTTAAT
CAATGATTATTTTAATGTTGTTTGTCAGTGCTTCCCTTCAATATTAAAGC
ATGTGATGTCTAAGCAATGTCTGTATTGTTGTAACTTTCAGAGTGCGGGC
CAATTCCTGCGGATTTCAACCTCGGGGGTAGACTTGCGATGCTGCCAAAT
CAGCTGGGCCAGATGATGTTTGAGGAGATACAGAATTCCTCTGTCGTCGA
GCTGCTCAACAACCCTGCCAGCAACGCAGAGAACCAGCATCCTGAGTTCC
GGGAATTCGCGTCTACGGTCATCTTCCCGCGATGTGCTGTCTCCGAAGAG
AACAACACTTCCTGCACTTTGTCTCAACATGCAGACAACACGACCCGGTG
CATGTGAGTAAAACATGCTGCTTTCGATTTTATTGGACATTGTTGCAATA
ATTTTTGTTCACTTTTATTCCTTAAGATTGACTGGTTAATAACAGCCACC
TGGTCATCCATACTAAGGATTGCAACGTAAACACCCACGCTTGAATTAGT
AAGCACTGATTTGTCGTTTTGTTTTACAGGTCTCAGCATATGCGTTAGCG
GGTGGAAGGTCACAACACACCTCACATTGCAACAGTAATTCTTATAAAGA
TTCACTGTTTTGTAGGGACACACAGCTGCTGCCGTGCCGTTCGTGGTGCG
AGGAAGTCAACAAGGCTGATGGCCGGATGAAGAACCGGT Coding sequence (CDS) from alignment at Sc0000381:105335..111273+ >transcript:BL96257_cuf0 ID=transcript:BL96257_cuf0|Name=transcript:BL96257_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=2004bp|location=Sequence derived from alignment at Sc0000381:105335..111273+ (Branchiostoma lanceolatum)
AACTATTTCAATGTATTACAAACTGTCATTCTTCTCTCTACAGGGTGTTT
AAATGAAGACTACGTTCGTTTTAACGGAGTTTGCTACAAGTACTTTGCTT
TGTCGAAGACGTACTCTCAGGCCCGACAGACGTGTGCCGCAGACGGGGGA
ATGTTGGCCATGCCGAAGGACAGTGAGACCAACACTTTTATCGCCGGACT
GGGAAACGGAGACGGAGCGCGCTGGATTGGGCTTACTGACGCCGCCAGTG
AAGGCCAGTGGTTGTTTGAGGACGGCCAAACCCTGGAGTCAACCGGCTTT
TCCAACTGGGACAATGGCGAACTGGATGGTGGCACTGCTGAAAACTGTAA
CGCCTTCGGGTGGACTGGGTCCGCGTGGAACGATGTGAGATGCAGCAGGT
CGATACGATTCATCTGTCAGATAGATCAAGTTGCAGCCCAAACAACCACA
GCTCTACCTTCATCCACTACAAGAACCACAATCATGACAACTAGTACTGC
GGCCACTACTACTCCTGTAACTACTACTACTGCGGCCACTACTACTCCTT
TAACTACTACTGCGGCAACTACTACTCCTGGCACCACTACTCCTGTTACT
ACTTCTGCGGCCACTGCTACTCCTGTAACTACTACTACGGCCACTACTAC
TCCTGGAACTACTACTGTGGCCATTACTACTCCTGAAACTCCTACTACGG
CCACTTTTACTCCTGGAACTATTACTGCAGCCACTACTACTCCTGGAACT
ACTTCTGCAGCCCCTACTACTCTTGAAGCTACTACTGTTGCTACTACTAC
TCCTGAAACTACTTTTGCACCCACTACTTCTCCTACTACTAGTACTGCTG
CTACTACTGCTACTGTTCCTGCAACCACTACTTCTGCTTCTACTCCTGGA
ACTGCTACTTCTAATACTGCTGCTGATATTACTGGCACCACTCATGTAAC
TACTGCTCCTACTACTACTGCAACTTCTGCTGATTCTATTTCTGCTGCAA
GTACTACTAGTACTGCTGCTACAACTTCTACTGCTGCAACTGCTGCTACT
GCACCACAGTCTGGTACATCCCAAGCGACAGTCATGCGCACCTCGTTACC
AGGAGTGATGTCACCATCACCGGGGGAAAGTACTTCAGGAGCAACAACAG
GTTGTCCTCCTGGCTACGCTCCATTCGGGGGTTCGTGCTTCAAGGCGTAC
AATAAAGACAAAACCTACAACCAGGCCAGACAGGTGTGTGCAGCGGACGG
AGGGCTTTTGGCCATGCCGAGGGACAAAGACGAGGACAATTTCTTGAGGG
ACCTGAAGAACAGCGTGGATCCCAACTCCCCTTTCTGGTTCGGCCTGAGC
AGTCAGAAAAGCGAGGGTGGTTGGGTGTGGGAAGACGGGACTCCATACAA
CACAGCCGCAGACCGACAGTATGGGGGATGGCAGCTGGGGGAACCCAGCA
ATAAAGGAGGAGGGGGAGGAGTCTGCGCCAACCACTTCGAAACTGGATGG
AACGACGCGCCCTGCTCGTCTGCGCAGAAGTTCATCTGCCAGCTGAATGG
TGCAGTCCGCTGCCCCCTGGGGTACCTCCGGTGCGGACACGGACATGCCT
GCATCCTGGCCTGGAAGCGCTGTGACGGGCGGACGGACTGTTCAGACGCG
AGTGACGAGGAAGGTTGTGAGTGCGGGCCAATTCCTGCGGATTTCAACCT
CGGGGGTAGACTTGCGATGCTGCCAAATCAGCTGGGCCAGATGATGTTTG
AGGAGATACAGAATTCCTCTGTCGTCGAGCTGCTCAACAACCCTGCCAGC
AACGCAGAGAACCAGCATCCTGAGTTCCGGGAATTCGCGTCTACGGTCAT
CTTCCCGCGATGTGCTGTCTCCGAAGAGAACAACACTTCCTGCACTTTGT
CTCAACATGCAGACAACACGACCCGGTGCATGGACACACAGCTGCTGCCG
TGCCGTTCGTGGTGCGAGGAAGTCAACAAGGCTGATGGCCGGATGAAGAA
CCGG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| Sc0000381 | genome | Sc0000381:105335..111273 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL96257_cuf0 |
| Biotype | protein_coding |
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