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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96083_evm0 >transcript:BL96083_evm0-protein ID=transcript:BL96083_evm0-protein|Name=transcript:BL96083_evm0|organism=Branchiostoma lanceolatum|type=polypeptide|length=497bp
MEFVDLTTGLVLVCSFLLSLFCLRTWAGHRGRPVKFPPSPPGLPFLGNLL
SLTREPHLQLTAWRRQYGDVFSLRMGPQDVVVVNGCAAIKEALVMKGAHF
SDRPALFLTEAISSRKGIIMRKDSDDWKSIRRFGLSRLRHFGVGKKTLEP
SIQQECRRLCQSFKDMNGEAFDASRFVQVAVSNVINTIAVGRRFEPDDPD
FQEQLERLDVIFQLFLQAQILNFYPALRYVPGIRGLLNKWKEVDFHSKRW
LQKIIDDHKETFNPSKIRDVIDMYLLELDQSKGSKPFLKEDNIKNTIADL
LSAGTETSTTAISWALLYLALNPVWQRKVQEELDTVVGSDEIPPYSRREE
LPYTEATILESQRIRTTVPLSVPHCTSSPTSLQGYDIPAHTQVWVNLWSV
HMDPAYWSHPDTFDPSRFLDDNGRVKVPEAFMPFSTGRRICIGEQLAKME
LFLFLTSLLQQFTFKLPEGEPKPDMSGEIGATLLPRPYKIQAISHKK Run BLAST on NCBI mRNA from alignment at Sc0000407:17605..20777- Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96083_evm0 ID=transcript:BL96083_evm0|Name=transcript:BL96083_evm0|organism=Branchiostoma lanceolatum|type=mRNA|length=3173bp|location=Sequence derived from alignment at Sc0000407:17605..20777- (Branchiostoma lanceolatum)
ATGGAGTTTGTCGACCTGACCACGGGTCTTGTCTTGGTCTGTTCGTTCCT
TCTGTCGCTCTTCTGTCTCCGGACATGGGCGGGACACCGCGGCCGTCCCG
TCAAGTTTCCCCCCAGCCCCCCTGGGCTGCCGTTCTTGGGGAACCTGCTG
TCCCTGACCCGGGAGCCCCACCTGCAGCTGACGGCGTGGCGCCGCCAGTA
CGGAGACGTGTTCAGTCTGCGGATGGGTCCTCAGGACGTGGTGGTTGTGA
ACGGGTGTGCCGCCATCAAGGAGGCCCTGGTCATGAAGGGCGCACACTTC
TCGGACAGACCCGCGCTGTTCCTCACGGAAGCGATTTCATCTAGGAAAGG
TATTCTGTTCTAACCTTGACTTCTCAGTGTCCTCTTCCTCCGCTACTAAT
GCCCACCCACACCTACATGGCCGATACGACAGCGTTTTGGCAGTAGCAGA
TGTTGCTCAATAGATAGACATATTTCATACGCAAAACATGGCCCTATCTG
TTGAAGATAACTGAATTGTATGAGGTTTTTAGCAAGAACCTTCTTGCACG
GCTTTATGTAGTATTTACACACAAGTAAAAGAACATGGTTTCTTACGTTG
CAAACAAAGAGGAATGAAAAGACTTGAATGTACGATCATAAGAAAGGGGC
CGATATCATTGCAAAGGACAATACATGATCTTTCCAGTGATATATGATAC
GATGGTCATATGATCAACCAAAATCTTTCTGAACTTTCTTTGTAACTTTA
TCTTTACTTTAAAGACAAATGAGGAATTCCCGTTATGTGTGTCATGGCTG
CAGGAATCATCATGCGAAAAGATAGTGATGACTGGAAAAGTATCCGACGA
TTCGGTCTCTCTAGACTTCGCCACTTTGGTGTGGGCAAGAAAACACTCGA
GCCCAGCATTCAACAGGAATGCCGCCGACTTTGCCAGAGCTTTAAGGTAA
GTCCATATCTGAACGTGGTGCCGTTGGATAATGTTTATACCTACCCTGAG
TACTATCCTACATTGTTACCGCTGGCTCAGTCTTTTCGCATGTCTGTCGT
GCGCAACCGAAATGATTGAGCCAGGGGTAACAACGAAGGGTGGTACCCAG
CCTAGTTCATACCAGAGCCAACTGGTCGCAGCACAGCAGTGTACCCAAAA
CTCGTGACAACAGATGTTTGAGGCCATATATATCAGGGCACTCCAGCCGT
CACTCAACAGAGACAGTGGGCGTTATAAACTTCCTGGCACGTTTGCCAAT
TGCTGACGTCACGTATCCGCAGTGACATGTGTCAATAGAGTCACGTGTCC
GTAACTCTCGCGAGTTTACGTTCGGCAGTGTTGGTCATTATTTATCCTGA
AGAAGGCGACAGTGGTCGTCGAAAATTCGATCCGTGAATACCTTAGTGTT
GGAAGAAAGTTTAGCATTGTATTATAACAGATGTTTGAGCTGACAACCGG
GAATGATAACTTGAACCAGGGAGGGTAAAACCTCCTTGAATTAAGGAATG
GAAGATTTTACATCTCACTGACAGCGCCCCTTTTTTTCTTAAGGATATGA
ATGGAGAGGCCTTCGATGCTAGCCGCTTCGTTCAAGTTGCCGTCAGCAAT
GTCATCAATACCATTGCAGTTGGAAGACGGTTTGAGCCCGATGATCCCGA
TTTTCAGGAACAGTTAGAGAGACTTGATGTCATCTTCCAGCTGTTTCTTC
AGGCCCAGATTCTGAACTTTTATCCAGCACTAAGATATGTCCCTGGCATT
CGTGGATTGTTAAATAAGTGGAAAGAAGTCGATTTCCATTCAAAACGGTG
GTTGCAAAAGATAATCGATGACCACAAGGAGACCTTCAACCCTTCCAAAA
TCCGGGACGTAATTGACATGTACCTGCTGGAACTGGACCAAAGCAAAGGA
AGCAAACCCTTTTTGAAAGAGGACAACATAAAGAACACCATAGCAGATCT
CCTTTCTGCAGGTACAGAAACGTCTACGACAGCTATCTCCTGGGCACTGC
TCTACCTGGCGCTCAACCCTGTGTGGCAGCGGAAAGTCCAAGAGGAGCTA
GATACCGTGGTAGGAAGTGATGAAATCCCGCCTTACTCCAGACGTGAGGA
GCTGCCCTACACAGAAGCGACCATCCTGGAGAGTCAGCGGATCCGCACCA
CGGTTCCCCTGTCCGTGCCCCACTGCACCTCGTCCCCGACCAGCCTACAG
GGGTACGACATCCCTGCACACACCCAGGTGTGGGTTAACCTGTGGTCCGT
CCACATGGACCCTGCCTACTGGTCCCACCCGGACACGTTCGACCCCAGCA
GGTTCCTGGACGACAACGGGAGGGTCAAGGTCCCAGAGGCCTTCATGCCG
TTCTCCACAGGTAAGCTAAGTGTTGTCAGACAGGCAATAGTGAAATACGG
TGCCTTTCTGAAAACTAATTGTTGAGGGTCCTATCTTTACCATACGTATA
CTGCACTAGTGAAACCATTCTGCAATGATAAAATACCGAAAGGCCTAGGT
CTGAGCAGTCAAAAACTCTTAGTTGTCCATGTTAGTAACGTTATATCATG
TCCAATATCTCCAGAAGATAATTCACAAGTAGTAGCTTAGATTTTGCTTA
CTCAACAATAATGCATAGGATCCGTAGACATAGCTCGGGCCTTCTTTCTC
ACGTCTCATTCGTTTTACATGGAAACTTTCTGGACTTACAGGAAGAAAAC
TTGCATGTATTGCTAATCTCAAAGCAGATCTACACTGGGCGCTGAAAATC
GTATATGCTAGCCAGAGAAGCTCCAGTCAGCCAGATAACCTTGTTCAGTT
GCGACATGGCGCAGATCCTACGGGGCTGACTGGAGCTTATCTGGCTGACT
GGAACTTCGCTGGCTAGCATATACGATTTTTAGCTCCCCGTGTAGATCTG
CTTGGAGATTAATGTATTGCTACATCGCGGCCGAATCAACACAATGCTAG
GTTCCCTTTTGTAGCTGATATGTTATCACTTTTTCCAGGGAGAAGAATTT
GCATCGGCGAGCAACTGGCCAAGATGGAACTTTTCCTGTTCCTCACGTCC
TTACTGCAGCAGTTCACCTTCAAACTGCCAGAGGGCGAGCCCAAACCAGA
TATGTCCGGAGAGATCGGAGCCACTCTCCTGCCCAGGCCGTACAAGATAC
AGGCCATTTCTCACAAGAAGTAG Coding sequence (CDS) from alignment at Sc0000407:17605..20777- >transcript:BL96083_evm0 ID=transcript:BL96083_evm0|Name=transcript:BL96083_evm0|organism=Branchiostoma lanceolatum|type=CDS|length=5976bp|location=Sequence derived from alignment at Sc0000407:17605..20777- (Branchiostoma lanceolatum)
ATGGAGTTTGTCGACCTGACCACGGGTCTTGTCTTGGTCTGTTCGTTCCT
TCTGTCGCTCTTCTGTCTCCGGACATGGGCGGGACACCGCGGCCGTCCCG
TCAAGTTTCCCCCCAGCCCCCCTGGGCTGCCGTTCTTGGGGAACCTGCTG
TCCCTGACCCGGGAGCCCCACCTGCAGCTGACGGCGTGGCGCCGCCAGTA
CGGAGACGTGTTCAGTCTGCGGATGGGTCCTCAGGACGTGGTGGTTGTGA
ACGGGTGTGCCGCCATCAAGGAGGCCCTGGTCATGAAGGGCGCACACTTC
TCGGACAGACCCGCGCTGTTCCTCACGGAAGCGATTTCATCTAGGAAAGG
AATCATCATGCGAAAAGATAGTGATGACTGGAAAAGTATCCGACGATTCG
GTCTCTCTAGACTTCGCCACTTTGGTGTGGGCAAGAAAACACTCGAGCCC
AGCATTCAACAGGAATGCCGCCGACTTTGCCAGAGCTTTAAGGATATGAA
TGGAGAGGCCTTCGATGCTAGCCGCTTCGTTCAAGTTGCCGTCAGCAATG
TCATCAATACCATTGCAGTTGGAAGACGGTTTGAGCCCGATGATCCCGAT
TTTCAGGAACAGTTAGAGAGACTTGATGTCATCTTCCAGCTGTTTCTTCA
GGCCCAGATTCTGAACTTTTATCCAGCACTAAGATATGTCCCTGGCATTC
GTGGATTGTTAAATAAGTGGAAAGAAGTCGATTTCCATTCAAAACGGTGG
TTGCAAAAGATAATCGATGACCACAAGGAGACCTTCAACCCTTCCAAAAT
CCGGGACGTAATTGACATGTACCTGCTGGAACTGGACCAAAGCAAAGGAA
GCAAACCCTTTTTGAAAGAGGACAACATAAAGAACACCATAGCAGATCTC
CTTTCTGCAGGTACAGAAACGTCTACGACAGCTATCTCCTGGGCACTGCT
CTACCTGGCGCTCAACCCTGTGTGGCAGCGGAAAGTCCAAGAGGAGCTAG
ATACCGTGGTAGGAAGTGATGAAATCCCGCCTTACTCCAGACGTGAGGAG
CTGCCCTACACAGAAGCGACCATCCTGGAGAGTCAGCGGATCCGCACCAC
GGTTCCCCTGTCCGTGCCCCACTGCACCTCGTCCCCGACCAGCCTACAGG
GGTACGACATCCCTGCACACACCCAGGTGTGGGTTAACCTGTGGTCCGTC
CACATGGACCCTGCCTACTGGTCCCACCCGGACACGTTCGACCCCAGCAG
GTTCCTGGACGACAACGGGAGGGTCAAGGTCCCAGAGGCCTTCATGCCGT
TCTCCACAGGGAGAAGAATTTGCATCGGCGAGCAACTGGCCAAGATGGAA
CTTTTCCTGTTCCTCACGTCCTTACTGCAGCAGTTCACCTTCAAACTGCC
AGAGGGCGAGCCCAAACCAGATATGTCCGGAGAGATCGGAGCCACTCTCC
TGCCCAGGCCGTACAAGATACAGGCCATTTCTCACAAGAAGTAGATGGAG
TTTGTCGACCTGACCACGGGTCTTGTCTTGGTCTGTTCGTTCCTTCTGTC
GCTCTTCTGTCTCCGGACATGGGCGGGACACCGCGGCCGTCCCGTCAAGT
TTCCCCCCAGCCCCCCTGGGCTGCCGTTCTTGGGGAACCTGCTGTCCCTG
ACCCGGGAGCCCCACCTGCAGCTGACGGCGTGGCGCCGCCAGTACGGAGA
CGTGTTCAGTCTGCGGATGGGTCCTCAGGACGTGGTGGTTGTGAACGGGT
GTGCCGCCATCAAGGAGGCCCTGGTCATGAAGGGCGCACACTTCTCGGAC
AGACCCGCGCTGTTCCTCACGGAAGCGATTTCATCTAGGAAAGGAATCAT
CATGCGAAAAGATAGTGATGACTGGAAAAGTATCCGACGATTCGGTCTCT
CTAGACTTCGCCACTTTGGTGTGGGCAAGAAAACACTCGAGCCCAGCATT
CAACAGGAATGCCGCCGACTTTGCCAGAGCTTTAAGGATATGAATGGAGA
GGCCTTCGATGCTAGCCGCTTCGTTCAAGTTGCCGTCAGCAATGTCATCA
ATACCATTGCAGTTGGAAGACGGTTTGAGCCCGATGATCCCGATTTTCAG
GAACAGTTAGAGAGACTTGATGTCATCTTCCAGCTGTTTCTTCAGGCCCA
GATTCTGAACTTTTATCCAGCACTAAGATATGTCCCTGGCATTCGTGGAT
TGTTAAATAAGTGGAAAGAAGTCGATTTCCATTCAAAACGGTGGTTGCAA
AAGATAATCGATGACCACAAGGAGACCTTCAACCCTTCCAAAATCCGGGA
CGTAATTGACATGTACCTGCTGGAACTGGACCAAAGCAAAGGAAGCAAAC
CCTTTTTGAAAGAGGACAACATAAAGAACACCATAGCAGATCTCCTTTCT
GCAGGTACAGAAACGTCTACGACAGCTATCTCCTGGGCACTGCTCTACCT
GGCGCTCAACCCTGTGTGGCAGCGGAAAGTCCAAGAGGAGCTAGATACCG
TGGTAGGAAGTGATGAAATCCCGCCTTACTCCAGACGTGAGGAGCTGCCC
TACACAGAAGCGACCATCCTGGAGAGTCAGCGGATCCGCACCACGGTTCC
CCTGTCCGTGCCCCACTGCACCTCGTCCCCGACCAGCCTACAGGGGTACG
ACATCCCTGCACACACCCAGGTGTGGGTTAACCTGTGGTCCGTCCACATG
GACCCTGCCTACTGGTCCCACCCGGACACGTTCGACCCCAGCAGGTTCCT
GGACGACAACGGGAGGGTCAAGGTCCCAGAGGCCTTCATGCCGTTCTCCA
CAGGGAGAAGAATTTGCATCGGCGAGCAACTGGCCAAGATGGAACTTTTC
CTGTTCCTCACGTCCTTACTGCAGCAGTTCACCTTCAAACTGCCAGAGGG
CGAGCCCAAACCAGATATGTCCGGAGAGATCGGAGCCACTCTCCTGCCCA
GGCCGTACAAGATACAGGCCATTTCTCACAAGAAGTAGATGGAGTTTGTC
GACCTGACCACGGGTCTTGTCTTGGTCTGTTCGTTCCTTCTGTCGCTCTT
CTGTCTCCGGACATGGGCGGGACACCGCGGCCGTCCCGTCAAGTTTCCCC
CCAGCCCCCCTGGGCTGCCGTTCTTGGGGAACCTGCTGTCCCTGACCCGG
GAGCCCCACCTGCAGCTGACGGCGTGGCGCCGCCAGTACGGAGACGTGTT
CAGTCTGCGGATGGGTCCTCAGGACGTGGTGGTTGTGAACGGGTGTGCCG
CCATCAAGGAGGCCCTGGTCATGAAGGGCGCACACTTCTCGGACAGACCC
GCGCTGTTCCTCACGGAAGCGATTTCATCTAGGAAAGGAATCATCATGCG
AAAAGATAGTGATGACTGGAAAAGTATCCGACGATTCGGTCTCTCTAGAC
TTCGCCACTTTGGTGTGGGCAAGAAAACACTCGAGCCCAGCATTCAACAG
GAATGCCGCCGACTTTGCCAGAGCTTTAAGGATATGAATGGAGAGGCCTT
CGATGCTAGCCGCTTCGTTCAAGTTGCCGTCAGCAATGTCATCAATACCA
TTGCAGTTGGAAGACGGTTTGAGCCCGATGATCCCGATTTTCAGGAACAG
TTAGAGAGACTTGATGTCATCTTCCAGCTGTTTCTTCAGGCCCAGATTCT
GAACTTTTATCCAGCACTAAGATATGTCCCTGGCATTCGTGGATTGTTAA
ATAAGTGGAAAGAAGTCGATTTCCATTCAAAACGGTGGTTGCAAAAGATA
ATCGATGACCACAAGGAGACCTTCAACCCTTCCAAAATCCGGGACGTAAT
TGACATGTACCTGCTGGAACTGGACCAAAGCAAAGGAAGCAAACCCTTTT
TGAAAGAGGACAACATAAAGAACACCATAGCAGATCTCCTTTCTGCAGGT
ACAGAAACGTCTACGACAGCTATCTCCTGGGCACTGCTCTACCTGGCGCT
CAACCCTGTGTGGCAGCGGAAAGTCCAAGAGGAGCTAGATACCGTGGTAG
GAAGTGATGAAATCCCGCCTTACTCCAGACGTGAGGAGCTGCCCTACACA
GAAGCGACCATCCTGGAGAGTCAGCGGATCCGCACCACGGTTCCCCTGTC
CGTGCCCCACTGCACCTCGTCCCCGACCAGCCTACAGGGGTACGACATCC
CTGCACACACCCAGGTGTGGGTTAACCTGTGGTCCGTCCACATGGACCCT
GCCTACTGGTCCCACCCGGACACGTTCGACCCCAGCAGGTTCCTGGACGA
CAACGGGAGGGTCAAGGTCCCAGAGGCCTTCATGCCGTTCTCCACAGGGA
GAAGAATTTGCATCGGCGAGCAACTGGCCAAGATGGAACTTTTCCTGTTC
CTCACGTCCTTACTGCAGCAGTTCACCTTCAAACTGCCAGAGGGCGAGCC
CAAACCAGATATGTCCGGAGAGATCGGAGCCACTCTCCTGCCCAGGCCGT
ACAAGATACAGGCCATTTCTCACAAGAAGTAGATGGAGTTTGTCGACCTG
ACCACGGGTCTTGTCTTGGTCTGTTCGTTCCTTCTGTCGCTCTTCTGTCT
CCGGACATGGGCGGGACACCGCGGCCGTCCCGTCAAGTTTCCCCCCAGCC
CCCCTGGGCTGCCGTTCTTGGGGAACCTGCTGTCCCTGACCCGGGAGCCC
CACCTGCAGCTGACGGCGTGGCGCCGCCAGTACGGAGACGTGTTCAGTCT
GCGGATGGGTCCTCAGGACGTGGTGGTTGTGAACGGGTGTGCCGCCATCA
AGGAGGCCCTGGTCATGAAGGGCGCACACTTCTCGGACAGACCCGCGCTG
TTCCTCACGGAAGCGATTTCATCTAGGAAAGGAATCATCATGCGAAAAGA
TAGTGATGACTGGAAAAGTATCCGACGATTCGGTCTCTCTAGACTTCGCC
ACTTTGGTGTGGGCAAGAAAACACTCGAGCCCAGCATTCAACAGGAATGC
CGCCGACTTTGCCAGAGCTTTAAGGATATGAATGGAGAGGCCTTCGATGC
TAGCCGCTTCGTTCAAGTTGCCGTCAGCAATGTCATCAATACCATTGCAG
TTGGAAGACGGTTTGAGCCCGATGATCCCGATTTTCAGGAACAGTTAGAG
AGACTTGATGTCATCTTCCAGCTGTTTCTTCAGGCCCAGATTCTGAACTT
TTATCCAGCACTAAGATATGTCCCTGGCATTCGTGGATTGTTAAATAAGT
GGAAAGAAGTCGATTTCCATTCAAAACGGTGGTTGCAAAAGATAATCGAT
GACCACAAGGAGACCTTCAACCCTTCCAAAATCCGGGACGTAATTGACAT
GTACCTGCTGGAACTGGACCAAAGCAAAGGAAGCAAACCCTTTTTGAAAG
AGGACAACATAAAGAACACCATAGCAGATCTCCTTTCTGCAGGTACAGAA
ACGTCTACGACAGCTATCTCCTGGGCACTGCTCTACCTGGCGCTCAACCC
TGTGTGGCAGCGGAAAGTCCAAGAGGAGCTAGATACCGTGGTAGGAAGTG
ATGAAATCCCGCCTTACTCCAGACGTGAGGAGCTGCCCTACACAGAAGCG
ACCATCCTGGAGAGTCAGCGGATCCGCACCACGGTTCCCCTGTCCGTGCC
CCACTGCACCTCGTCCCCGACCAGCCTACAGGGGTACGACATCCCTGCAC
ACACCCAGGTGTGGGTTAACCTGTGGTCCGTCCACATGGACCCTGCCTAC
TGGTCCCACCCGGACACGTTCGACCCCAGCAGGTTCCTGGACGACAACGG
GAGGGTCAAGGTCCCAGAGGCCTTCATGCCGTTCTCCACAGGGAGAAGAA
TTTGCATCGGCGAGCAACTGGCCAAGATGGAACTTTTCCTGTTCCTCACG
TCCTTACTGCAGCAGTTCACCTTCAAACTGCCAGAGGGCGAGCCCAAACC
AGATATGTCCGGAGAGATCGGAGCCACTCTCCTGCCCAGGCCGTACAAGA
TACAGGCCATTTCTCACAAGAAGTAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000407 | genome | Sc0000407:17605..20777 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL96083_evm0 |
| Biotype | protein_coding |
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