transcript:BL68918_cuf0 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL68918_cuf0
Unique Nametranscript:BL68918_cuf0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL68918_cuf0

>transcript:BL68918_cuf0-protein ID=transcript:BL68918_cuf0-protein|Name=transcript:BL68918_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=130bp
LMLFSIVSFNTLQENTFQAVVATDYYHTYVMYRYRDRYMTWVPVLPLLVY
YLDGYPARIGYAVRTASSTYSIEDPNSAWWSRSNSDINAYRVSQKVSQTT
GKQGQIFYQVDNNGDDYINARLACDNWARV
Run BLAST on NCBI

mRNA from alignment at xfSc0029651:119..512+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL68918_cuf0 ID=transcript:BL68918_cuf0|Name=transcript:BL68918_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=394bp|location=Sequence derived from alignment at xfSc0029651:119..512+ (Branchiostoma lanceolatum)
CACTGATGTTGTTTTCTATTGTATCGTTTAACACTCTGCAGGAGAACACA
TTTCAAGCAGTTGTGGCCACTGACTACTACCACACGTACGTCATGTACCG
GTACAGAGACAGGTATATGACATGGGTCCCAGTCCTGCCTCTGCTTGTTT
ACTACCTCGATGGCTACCCCGCAAGAATAGGCTATGCGGTCAGGACAGCG
AGCAGCACGTATTCCATAGAAGACCCTAACTCGGCCTGGTGGAGTCGTAG
TAACAGCGACATCAACGCGTACCGTGTGAGCCAAAAAGTCAGTCAGACGA
CTGGGAAACAAGGCCAGATTTTCTACCAGGTGGACAACAATGGGGACGAC
TACATCAATGCCAGGCTTGCATGTGACAACTGGGCAAGGGTTAG

Coding sequence (CDS) from alignment at xfSc0029651:119..512+

>transcript:BL68918_cuf0 ID=transcript:BL68918_cuf0|Name=transcript:BL68918_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=390bp|location=Sequence derived from alignment at xfSc0029651:119..512+ (Branchiostoma lanceolatum)
CTGATGTTGTTTTCTATTGTATCGTTTAACACTCTGCAGGAGAACACATT
TCAAGCAGTTGTGGCCACTGACTACTACCACACGTACGTCATGTACCGGT
ACAGAGACAGGTATATGACATGGGTCCCAGTCCTGCCTCTGCTTGTTTAC
TACCTCGATGGCTACCCCGCAAGAATAGGCTATGCGGTCAGGACAGCGAG
CAGCACGTATTCCATAGAAGACCCTAACTCGGCCTGGTGGAGTCGTAGTA
ACAGCGACATCAACGCGTACCGTGTGAGCCAAAAAGTCAGTCAGACGACT
GGGAAACAAGGCCAGATTTTCTACCAGGTGGACAACAATGGGGACGACTA
CATCAATGCCAGGCTTGCATGTGACAACTGGGCAAGGGTT
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL68918gene:BL68918Branchiostoma lanceolatumgene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL68918_cuf0-E1BL68918_cuf0-E1-1564476830-547853Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL68918_cuf0transcript:BL68918_cuf0-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
xfSc0029651genomexfSc0029651:119..512 +
Properties
Property NameValue
Transcript idBL68918_cuf0
Biotypeprotein_coding