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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00042468 ID=TCONS_00042468|Name=TCONS_00042468|organism=Clytia hemisphaerica|type=transcript|length=973bp
TGATTAGTTTGCTTCAAGACTTTAACGAGTCAGagggGAAACTATACATC
ATCAGTGAGCTCCTTCCATTAGAAATAAGTTATGGTTGACAATCTGAATG
GTCAGCAAAATGTTGGTATTGATAAAAACAAATGTCGAGAATGGATGAAA
ATTGCTAGATCTGTTCAAGTGTGTCTCAAACAAAACTTAATTGATATTCT
ACACGATCCTGAGATAGATGGTCTTCCAAAGAATTCAAAGGACCGAGACG
ACATTCTAAACAAATTTTATCaagtaaatgaaaatgaattaaaaaagatG
ATTATGTTTGGGCAACTAGATTTCATTTCAAAGGATGGACAATCTCAAAT
CAGGAGATTATGCATTCCAAATCTGGTTTACTTAATCAATCAGTTAACCA
ATATTGATAAGATGCATTCTGGTAAGTTGGCTGGTCTTTCCAGTGCATTG
GAAATCCATCAAGATATTTATAAAGGTTCAATCACGTCCATGGAAGAAGA
GAATTTCCAGAGCCTTTGGAAACGAATTTATGATGTATTGATTGTTCTTG
GATACTCTGAGATGCCAGTTTTCCACTATCTGAAAGAGAAAGCATCGATT
GATGAGATAGATACTGAACAAATTGAGGTTCTAGATGTACGTTGCAGATC
TTTAAAGGCCCTGGATAAAGATATCGAAATAAAACAAAGAGAAATGAGCT
ATTTGATGGACTTGGTCAAATCTTATAGTTTGAAGGAACAGCAAATTGAC
GAGATTTGTTCTGGTTTGGCTGCTTCACAATCTCGAGATTAAAGTGGTTC
TGAAGGAGCCTCGTTTCACCAATATTGACGGAAATATTTTGAGTCATGAA
CTTTGGCGGATTATTCAGGTAGTCGATTTAAAGAGAGTGCCAGTTGTTAG
AGATTTTATGTCTACATGCAATTcaaatagaacaattttataaaaacaaa
attcaatgtttcttataaaagcg Run BLAST on NCBI protein sequence of TCONS_00042468-protein >TCONS_00042468-protein ID=TCONS_00042468-protein|Name=TCONS_00042468-protein|organism=Clytia hemisphaerica|type=polypeptide|length=236bp
MVDNLNGQQNVGIDKNKCREWMKIARSVQVCLKQNLIDILHDPEIDGLPK
NSKDRDDILNKFYQVNENELKKMIMFGQLDFISKDGQSQIRRLCIPNLVY
LINQLTNIDKMHSGKLAGLSSALEIHQDIYKGSITSMEEENFQSLWKRIY
DVLIVLGYSEMPVFHYLKEKASIDEIDTEQIEVLDVRCRSLKALDKDIEI
KQREMSYLMDLVKSYSLKEQQIDEICSGLAASQSRD Run BLAST on NCBI transcript from alignment at sc0003444:2428..3708+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00042468 ID=TCONS_00042468|Name=TCONS_00042468|organism=Clytia hemisphaerica|type=transcript|length=1281bp|location=Sequence derived from alignment at sc0003444:2428..3708+ (Clytia hemisphaerica)
TGATTAGTTTGCTTCAAGACTTTAACGAGTCAGGTAAGTCGACTAAAAAC
TGAATTAATGAATTTTGACGACATTTAATTTAAGTTTTGGTGGACTTTGT
GTCACCCTGTTCTGTACTACTCCTCGCACAGGCgacttttggaaaaatgt
ttctccTGTAATCTTTTCAGTGAGCGAATAGGCTATTATAATTATTggct
agtctgaatcgcagacttcTACAAAACCCCTGGTagtctataaggagcac
gattccgttagtggatgccagcagcctaactATTGACGAGCTCCAGTTTA
TTTTCGTAAGAAATAaattatcttgatttttttatttttagagggGAAAC
TATACATCATCAGTGAGCTCCTTCCATTAGAAATAAGTTATGGTTGACAA
TCTGAATGGTCAGCAAAATGTTGGTATTGATAAAAACAAATGTCGAGAAT
GGATGAAAATTGCTAGATCTGTTCAAGTGTGTCTCAAACAAAACTTAATT
GATATTCTACACGATCCTGAGATAGATGGTCTTCCAAAGAATTCAAAGGA
CCGAGACGACATTCTAAACAAATTTTATCaagtaaatgaaaatgaattaa
aaaagatGATTATGTTTGGGCAACTAGATTTCATTTCAAAGGATGGACAA
TCTCAAATCAGGAGATTATGCATTCCAAATCTGGTTTACTTAATCAATCA
GTTAACCAATATTGATAAGATGCATTCTGGTAAGTTGGCTGGTCTTTCCA
GTGCATTGGAAATCCATCAAGATATTTATAAAGGTTCAATCACGTCCATG
GAAGAAGAGAATTTCCAGAGCCTTTGGAAACGAATTTATGATGTATTGAT
TGTTCTTGGATACTCTGAGATGCCAGTTTTCCACTATCTGAAAGAGAAAG
CATCGATTGATGAGATAGATACTGAACAAATTGAGGTTCTAGATGTACGT
TGCAGATCTTTAAAGGCCCTGGATAAAGATATCGAAATAAAACAAAGAGA
AATGAGCTATTTGATGGACTTGGTCAAATCTTATAGTTTGAAGGAACAGC
AAATTGACGAGATTTGTTCTGGTTTGGCTGCTTCACAATCTCGAGATTAA
AGTGGTTCTGAAGGAGCCTCGTTTCACCAATATTGACGGAAATATTTTGA
GTCATGAACTTTGGCGGATTATTCAGGTAGTCGATTTAAAGAGAGTGCCA
GTTGTTAGAGATTTTATGTCTACATGCAATTcaaatagaacaattttata
aaaacaaaattcaatgtttcttataaaagcg Coding sequence (CDS) from alignment at sc0003444:2428..3708+ >TCONS_00042468 ID=TCONS_00042468|Name=TCONS_00042468|organism=Clytia hemisphaerica|type=CDS|length=711bp|location=Sequence derived from alignment at sc0003444:2428..3708+ (Clytia hemisphaerica)
ATGGTTGACAATCTGAATGGTCAGCAAAATGTTGGTATTGATAAAAACAA
ATGTCGAGAATGGATGAAAATTGCTAGATCTGTTCAAGTGTGTCTCAAAC
AAAACTTAATTGATATTCTACACGATCCTGAGATAGATGGTCTTCCAAAG
AATTCAAAGGACCGAGACGACATTCTAAACAAATTTTATCaagtaaatga
aaatgaattaaaaaagatGATTATGTTTGGGCAACTAGATTTCATTTCAA
AGGATGGACAATCTCAAATCAGGAGATTATGCATTCCAAATCTGGTTTAC
TTAATCAATCAGTTAACCAATATTGATAAGATGCATTCTGGTAAGTTGGC
TGGTCTTTCCAGTGCATTGGAAATCCATCAAGATATTTATAAAGGTTCAA
TCACGTCCATGGAAGAAGAGAATTTCCAGAGCCTTTGGAAACGAATTTAT
GATGTATTGATTGTTCTTGGATACTCTGAGATGCCAGTTTTCCACTATCT
GAAAGAGAAAGCATCGATTGATGAGATAGATACTGAACAAATTGAGGTTC
TAGATGTACGTTGCAGATCTTTAAAGGCCCTGGATAAAGATATCGAAATA
AAACAAAGAGAAATGAGCTATTTGATGGACTTGGTCAAATCTTATAGTTT
GAAGGAACAGCAAATTGACGAGATTTGTTCTGGTTTGGCTGCTTCACAAT
CTCGAGATTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00042468-exon-sc0003444-1491911889:2428..2460 | TCONS_00042468-exon-sc0003444-1491911889:2428..2460 | Clytia hemisphaerica | exon |
| TCONS_00042468-exon-sc0003444-1510915933:2428..2460 | TCONS_00042468-exon-sc0003444-1510915933:2428..2460 | Clytia hemisphaerica | exon |
| TCONS_00042468-exon-sc0003444-1575043694:2428..2460 | TCONS_00042468-exon-sc0003444-1575043694:2428..2460 | Clytia hemisphaerica | exon |
| TCONS_00042468-exon-sc0003444-1491911889:2769..3708 | TCONS_00042468-exon-sc0003444-1491911889:2769..3708 | Clytia hemisphaerica | exon |
| TCONS_00042468-exon-sc0003444-1510915933:2769..3708 | TCONS_00042468-exon-sc0003444-1510915933:2769..3708 | Clytia hemisphaerica | exon |
| TCONS_00042468-exon-sc0003444-1575043694:2769..3708 | TCONS_00042468-exon-sc0003444-1575043694:2769..3708 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003444 | supercontig | sc0003444:2428..3708 + |
Blast
The following BLAST results are available for this feature:
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