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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL64825_cuf2 >transcript:BL64825_cuf2-protein ID=transcript:BL64825_cuf2-protein|Name=transcript:BL64825_cuf2|organism=Branchiostoma lanceolatum|type=polypeptide|length=119bp
MLDVAKTKNVYKNFLKEFLGPNRLNIDDDTYDGMTACGLFCDGHVGPNCL
EQLIRIVKPGGHICIGLRETLLHTSENCKELEPRMAALQNEGLWQQVHRE
VFPGYCIGFDGVVYVYKVL Run BLAST on NCBI mRNA from alignment at xpSc0039704:8710..12528+ Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL64825_cuf2 ID=transcript:BL64825_cuf2|Name=transcript:BL64825_cuf2|organism=Branchiostoma lanceolatum|type=mRNA|length=3819bp|location=Sequence derived from alignment at xpSc0039704:8710..12528+ (Branchiostoma lanceolatum)
CAGTATTCACGATGAAGGGTTTCCACAAATCCTGAGGACTGCTATCAAAC
CTGTCCGTGGGCGCCAGACTAGTACCAGGTCGCTAGCGATTTGCTTCGGC
GGCCCAAGAACAGTCTGCCCGCCCGGTCTTAATCAACGCTCCGGGGAGTT
GTAGCCCGTAGGACTGAACCGCGTAGGGCCGGTCAACTCCCGGCTAGAAA
TCCCCCGGTGCGCTAATTAGGGTTCTGCGGGCTGGGGTCTCTGTGCCACC
GAAGGAACTGACTACAAGGTACCGGCTAAAGGGAACCGGCTAAACGGGCT
CGATAACCAGTCTGGAACCCAGGGTAACCGCCCTGTTGTTTACAGGATCT
AGACGAAGAGGAGTACGGAGGCCCGCGGAAGGTGGCCCAGACTCTGGCCG
CGGCGCTGGTCGAGGGGAGCGCCGCCCGGGTTCTAGACGTGGCGGCGGGG
CAGGGCGAGGGGAGCGCCGCCCGGGTTCTAGACGTGGCGGCGGGGCAGGG
CGAGGGGAGCGCCGCCCGGGTTCTAGACGTGGCGGCGGGGCAGGGCGAGG
GGAGCGCCGCCCGGGTTCTAGACGTGGCCGCGGGGACTGGGCTCTGTGGA
CTGGAGGTAGGCCGGCTGGACGCCTTCAATTTTCATTTTTCAGCAAGTAT
ATATAGCATTCATTCATTCCTTGAATTGTTCATTAATTTCCTGCACCTTT
CATTCATTTCTTCAACAAACACACTTAATCCATTCATTCATTCATTCATT
CATTCGTTTTCTTCTTATCATTCTTTACATCAAATCTACTTTGCGCATTT
GTACTGTTTTAATGATTGCTTTCTTTATCGATTCGTTGCAGTCATTGCTT
CTTTCCCTTATGCAAGCTCTTCGATATCTTATCCAACATTCGTATTACTG
CATATAACGTCTGTGGTATTTCCCAGTTGTCAAAGCTCGGTTTCTCAAAC
GTGGACGCCTTAGACGCGAGTCAGGAAATGTTGGACGTCGCCAAGACGAA
GAACGTCTACAAGAACTTCCTCAAGGAGTTCCTGGGGCCGAACCGTCTTA
ACATCGACGATGGTAAGAAGGGTTGTTTTTCATTATCATTATTGACAGCT
GTCAATCACACAAAGGCTCGATTAGTCTTCTTCCTTTGTACGCTTTCAGG
AAGAATGTATAAATGTAGCTTGGAATCTAGACTCTTGCCTGGGCCGACGC
AATACAATTCTTCGGCACTAAAGACCAACATACCCCCAACAAATTTAGTC
TCGGACCCCCTGAAGAAAACTGCTTATTGTTTCAAGCAGATACGATAATC
GCTGGGTGGGCTTAGTTAGATTGGCGGAGAAAGAAGCTTTCAGTGCTGAG
GAAGCTGGTGTGTTCCGCTGGCGGTTATACCGGCTTTAGAGATACAGAGA
CGTAGCTTGTTAAGCCCTGGATGAGACTGGTGACTAGGTTATCAAACCTT
TCATTATTATTACCTTAAGGATTATATCACTTCGACCTTGTTGAAAAGTG
GCCATGTGGCCGAACAAGCACTTCGAAGTAAAATAAAGGCTTTGACTTGA
CTTGACTTGACTTGATATATACAAAGCCAATATGCTTATCAAACTCAATG
ATTTGAAGACAAGCAAGATATCTTTTACGGAAGATCAAACATACATGCAT
AGTCAAATGAAAAATATATTAACGTAATACGGTGTGTGTGTATGTATAAC
TGTTTGTTTGTTTGTTTGTTTGTTTGATTGTTTGTTTGTAGATACGTATG
ACGGCATGACTGCCTGCGGACTGTTCTGTGACGGTCACGTGGGACCGAAC
TGCCTGGAACAGCTGATCAGGATAGTCAAACCGGGTGGGTAAAAACTCTG
AAACGAACTGTTAACTAGAAAATAACATTTACAAGCAAATGTATGGATGT
TTACCTTCACTTGGTCTAGCCTAACAGCCTACTGTTCTGACGTCACGTAT
CCGCAGTGACATGTGTCAATAGAGTCACGTGTCCGTAACTCTCGTGAGTT
TACGTTCGGCAGTGTTGGTCATTATTGATCCTGAAGAAGGCGACAGTGGT
CGTCGAAAATTCGATCCGTGAATACCTTAGTGTTGGAAGAAAGTTTAGCA
TTGTATTATGATTACTACCAACACAGATGAGCTTTCATTATAGCCTACTG
TTCTGGTTATTCTTTCTCAAACACATTCCTGATAAGTAGTGAGTAGTACT
GTGTACACTTCAAGCAACTCGTACTGATTCTGGCTAATCTGTTTTTCTTA
CTCATACGTACCCAATCATTTACCTATGCCAACAGCTCCGCATGGAGACG
TTGTTACATGAACAGCCAGGGTTGCCCAATGTTAACTAGTAGGGAATATT
AAACCATTGTTTAGGGCTAACCCCGGGGGAAAATACAATGTATAGGATAC
ACACCAAATCAATAGGATATTGGGTTTTAAAAAGATTGAAACACTTGTCC
ACTCTTTTCCTGCGATATTTGTCTAATCTCTAACTACTTTTTAAACCTTT
ACAGGTGGCCATATCTGCATCGGCCTCAGAGAAACGCTCCTGCACACTTC
CGAGAACTGCAAAGAGCTAGAACCCCGCATGGCGGCGCTTCAGAACGAGG
GTCTATGGCAGCAAGTACACCGGGAGGTTTTTCCTGGGTACTGCATCGGC
TTCGACGGAGTCGTCTATGTCTATAAAGTGTTGTAACTTGCGTTTATAGA
GAAAAGGAAAACAATTCCTAAATCTCTGCATGAAATCTCATCTGAGTTGG
TAGAGTACATATTGGGAAAATGTGAAGCTTTCATCCAACACAAAAAAATG
ACTCACCATGAAACGCAGTGGATTGAATATCTGTTGAAGGCTGGAGGTCC
AGCCGAAAATTTATGGCGAGTCAATTCTTGACTTGTATCAACGCTTCAAA
TTTTCCCAATAAATACCTAAATCTATGAAGTTTGTATACAACACACCACC
TCGCAGAATTGTAACGACAAGGTCTGAATTAAGTTTATCATAAACACCTT
CTGGGAGAATTACACTAAAAAAAAGTCGAGAAGGCTGTGTAGTTAAAACA
TAGAGAACACGTTTAAACATTACTCCGTTGACGATCATTTACAATATGTG
GGTAATGTACACATTTCGAAATTAGGCTAGAACTCTGAATGTCAATAAAA
CAGTCACATAGGAATTTATGAAACGCGGTATCTCTATGTGTCTGCTTTGA
TGATTCGCTTATGTTAGTTTTGGCAATAAAGAAGTCACCACAATAATATC
AAGTCGTCTAGATATTTTCGAGGCGTTGATTCGAGTGTTACATTTTTGGT
AAAGATATAAGCAAACAATTTGTCCAAAACTTTTTCTTGATTTTAATCTA
TATGCAGCGTACCAGAATAACCTGTATTAATCCTTAGGCTAATTGATCAT
GATTCGGATATAAGTGGATATCAGAATGTCGTGTTGTTGGTTTAGAGGTG
TATTTATTTTAGTTGGTTCTTACGCATTCAGTGAAACTTGCAGACATCTT
CTAATCTATTTTCTTGACCCCGAATTAAAAGATGACACTCAAGATTATCC
CAAAATTCATCAATATTTCATGATGCATGATGTAATTAGACTTGTGACCT
TGGAGCGAACAGCCTGAACTACAAGATGGCCGATGGGAATATAACTAGCA
TTTTTTTCCTTATATTTTTACCAGACATGTGCCGAAAATAACTCAAAACA
AAATTAGCCCAACTTGAATCATGTAAATCCTAAGATAGTCATTTTGTTGT
AGTGAATAGTTTTATTCCATACTTATGTCTTGTTCTTTGTTTACTGTTGT
TGCCATACTTTGTACCTGC Coding sequence (CDS) from alignment at xpSc0039704:8710..12528+ >transcript:BL64825_cuf2 ID=transcript:BL64825_cuf2|Name=transcript:BL64825_cuf2|organism=Branchiostoma lanceolatum|type=CDS|length=1080bp|location=Sequence derived from alignment at xpSc0039704:8710..12528+ (Branchiostoma lanceolatum)
ATGTTGGACGTCGCCAAGACGAAGAACGTCTACAAGAACTTCCTCAAGGA
GTTCCTGGGGCCGAACCGTCTTAACATCGACGATGATACGTATGACGGCA
TGACTGCCTGCGGACTGTTCTGTGACGGTCACGTGGGACCGAACTGCCTG
GAACAGCTGATCAGGATAGTCAAACCGGGTGGCCATATCTGCATCGGCCT
CAGAGAAACGCTCCTGCACACTTCCGAGAACTGCAAAGAGCTAGAACCCC
GCATGGCGGCGCTTCAGAACGAGGGTCTATGGCAGCAAGTACACCGGGAG
GTTTTTCCTGGGTACTGCATCGGCTTCGACGGAGTCGTCTATGTCTATAA
AGTGTTGTAAATGTTGGACGTCGCCAAGACGAAGAACGTCTACAAGAACT
TCCTCAAGGAGTTCCTGGGGCCGAACCGTCTTAACATCGACGATGATACG
TATGACGGCATGACTGCCTGCGGACTGTTCTGTGACGGTCACGTGGGACC
GAACTGCCTGGAACAGCTGATCAGGATAGTCAAACCGGGTGGCCATATCT
GCATCGGCCTCAGAGAAACGCTCCTGCACACTTCCGAGAACTGCAAAGAG
CTAGAACCCCGCATGGCGGCGCTTCAGAACGAGGGTCTATGGCAGCAAGT
ACACCGGGAGGTTTTTCCTGGGTACTGCATCGGCTTCGACGGAGTCGTCT
ATGTCTATAAAGTGTTGTAAATGTTGGACGTCGCCAAGACGAAGAACGTC
TACAAGAACTTCCTCAAGGAGTTCCTGGGGCCGAACCGTCTTAACATCGA
CGATGATACGTATGACGGCATGACTGCCTGCGGACTGTTCTGTGACGGTC
ACGTGGGACCGAACTGCCTGGAACAGCTGATCAGGATAGTCAAACCGGGT
GGCCATATCTGCATCGGCCTCAGAGAAACGCTCCTGCACACTTCCGAGAA
CTGCAAAGAGCTAGAACCCCGCATGGCGGCGCTTCAGAACGAGGGTCTAT
GGCAGCAAGTACACCGGGAGGTTTTTCCTGGGTACTGCATCGGCTTCGAC
GGAGTCGTCTATGTCTATAAAGTGTTGTAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| xpSc0039704 | genome | xpSc0039704:8710..12528 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL64825_cuf2 |
| Biotype | protein_coding |
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