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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00042590 ID=TCONS_00042590|Name=TCONS_00042590|organism=Clytia hemisphaerica|type=transcript|length=1728bp
GTTTGATATTCAACATCGCACAAACTTCTGCCATCAAATGAGACAAAAAA
ATGGTACCTTGATCAGTGACAAAGTATCTTGGAACGCCAAAGCGAAATAT
GATGCAGTAACAATTCAGCAATGACGTGTGCTTCGGTCGAGGCAGTCGCG
AATGCCTCAGGCCCAGAGGTGAGTCGTTCAATAAAAACCACTACGTATCT
GTTCCCAGCGTCTGTTCTTAGGAAAGGTCCAACTACATCACAGTGAAGTG
CCCTCCAGGGTTCTCCAGTTGCTATAGGTAGTAGTGGTgctttctttgat
ggtgttccTTTATCCTGTTGGCATATAATGCAGGTGTTGACCCAGGTTTG
GATATCAGTCAACATCCCTGGCCAAAAATACCGTCTTCTGGTTTTGTCGG
CGGTCTTTGCAAAGCCAAAGTGTGCTGCGTTAGGTTCATCGTGATTGTAC
CTCATGATAGTTGCGCGGAACTTCTTTGGGATTACCAATTGTTTCCATAC
ACCTTCGGGTGTAGTGTTCTTTGGGCTATGATGTGGTAAAGAACACCTCC
ATCCATGAGATAGTTGTCAATGTCTCTCAGAACAGTATCTTTTTTGCTTG
CCTTCAGGTAGAGTCTTCTTTTGCAGATATTCCATTTTTGCTTTCAAATC
AGGATCTGCAATTTGGTGTCGTTGAATTTCGTGTTTGTCGAAGGTGTTTT
TCGTAATAGCAGCGAAGAAGAGGTTGTTGGCTGCTTCTGATGGACTTTGA
AATGTTTCCTCATCATTGATATTTGAAGGACCGTCTTCAGCCTCTCTGGT
TGTATGATCAAAGGAGTTTATTTCTTCGTTCATTCTTTCCGGAATATCTA
TTGGTTCGTTTGGTCTTCTCTTTTCCCAATCaatggtttgttttttcttt
tggatACTTTTGGTTTAGTTTGGGCTTCTGCTTGTAGCTGATCCCATGGA
ATTCTTGACAAACCGTCTGCGTTCTCGTTTGCTTTTCCCGGTCTATACTC
GATGATAAAATCATAAGCTTGTAGATATAGACTCCAGCGACTAATTTACC
AGTGCTGTCCTTTGTGCTCAGGATGTAGTTCAGTGGCTTATGGTCTGTTA
GAATTGTGAATTGCCTACCATGAAGGTATGGGTGAAGTTTCTTTACGGCA
GTCACGATTGCTAAAACTTCTCGCTCGATAACAGATAGTCTTTGTTCTGC
TTCATCCAAACGACGTCCTCCATAGATCACGGCCTTTTCTAGCTTGTCAT
ACCTTTGGCTTAAGGTCCAGCCGATTCCAGTATTAGACGCATCGGTTTGT
AGGTAGAATCTCTTTGTAAAATCTGGTAGAGCAACCACAGGTTCGGACGT
GAGAGTATGTTTCAGTTCCTCAAATACCTGTTGACAGGTGTCATCCCAAT
TTAATTTTACTCCTAATTTCGTCAGGTTGTATAAAGGTGATGCCAAGTTA
CTGAATCCCTTCACAAATCGTCTTTGTAAGTTGTCTTCTGGACCAGTTAC
TCTTCTATCAGTTTGACTTGTCTCTTGGATCGGTGCAATTGTTGTTATCT
TTGTTAGGGTGCCCAGAAGAGAACCGGCAGGAATTTTTACGGGATTCTCA
TTGAAACTTGTAACTTTCAAGGTAACTCTTCCACTGCTTCCCCGAAAAAT
TGCCGGAGTTATGTTCAAGGATGTTTGTTGTTTCAGTTCCTCTGATGGTT
CGAAGAGATAATCGTCTCCGGATGAAAA Run BLAST on NCBI protein sequence of TCONS_00042590-protein >TCONS_00042590-protein ID=TCONS_00042590-protein|Name=TCONS_00042590-protein|organism=Clytia hemisphaerica|type=polypeptide|length=282bp
FSSGDDYLFEPSEELKQQTSLNITPAIFRGSSGRVTLKVTSFNENPVKIP
AGSLLGTLTKITTIAPIQETSQTDRRVTGPEDNLQRRFVKGFSNLASPLY
NLTKLGVKLNWDDTCQQVFEELKHTLTSEPVVALPDFTKRFYLQTDASNT
GIGWTLSQRYDKLEKAVIYGGRRLDEAEQRLSVIEREVLAIVTAVKKLHP
YLHGRQFTILTDHKPLNYILSTKDSTGKLVAGVYIYKLMILSSSIDREKQ
TRTQTVCQEFHGISYKQKPKLNQKYPKEKTNH Run BLAST on NCBI transcript from alignment at sc0003513:5147..6874 Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00042590 ID=TCONS_00042590|Name=TCONS_00042590|organism=Clytia hemisphaerica|type=transcript|length=1728bp|location=Sequence derived from alignment at sc0003513:5147..6874 (Clytia hemisphaerica)
TTTTCATCCGGAGACGATTATCTCTTCGAACCATCAGAGGAACTGAAACA
ACAAACATCCTTGAACATAACTCCGGCAATTTTTCGGGGAAGCAGTGGAA
GAGTTACCTTGAAAGTTACAAGTTTCAATGAGAATCCCGTAAAAATTCCT
GCCGGTTCTCTTCTGGGCACCCTAACAAAGATAACAACAATTGCACCGAT
CCAAGAGACAAGTCAAACTGATAGAAGAGTAACTGGTCCAGAAGACAACT
TACAAAGACGATTTGTGAAGGGATTCAGTAACTTGGCATCACCTTTATAC
AACCTGACGAAATTAGGAGTAAAATTAAATTGGGATGACACCTGTCAACA
GGTATTTGAGGAACTGAAACATACTCTCACGTCCGAACCTGTGGTTGCTC
TACCAGATTTTACAAAGAGATTCTACCTACAAACCGATGCGTCTAATACT
GGAATCGGCTGGACCTTAAGCCAAAGGTATGACAAGCTAGAAAAGGCCGT
GATCTATGGAGGACGTCGTTTGGATGAAGCAGAACAAAGACTATCTGTTA
TCGAGCGAGAAGTTTTAGCAATCGTGACTGCCGTAAAGAAACTTCACCCA
TACCTTCATGGTAGGCAATTCACAATTCTAACAGACCATAAGCCACTGAA
CTACATCCTGAGCACAAAGGACAGCACTGGTAAATTAGTCGCTGGAGTCT
ATATCTACAAGCTTATGATTTTATCATCGAGTATAGACCGGGAAAAGCAA
ACGAGAACGCAGACGGTTTGTCAAGAATTCCATGGGATCAGCTACAAGCA
GAAGCCCAAACTAAACCAAAAGTatccaaaagaaaaaacaaaccattGAT
TGGGAAAAGAGAAGACCAAACGAACCAATAGATATTCCGGAAAGAATGAA
CGAAGAAATAAACTCCTTTGATCATACAACCAGAGAGGCTGAAGACGGTC
CTTCAAATATCAATGATGAGGAAACATTTCAAAGTCCATCAGAAGCAGCC
AACAACCTCTTCTTCGCTGCTATTACGAAAAACACCTTCGACAAACACGA
AATTCAACGACACCAAATTGCAGATCCTGATTTGAAAGCAAAAATGGAAT
ATCTGCAAAAGAAGACTCTACCTGAAGGCAAGCAAAAAAGATACTGTTCT
GAGAGACATTGACAACTATCTCATGGATGGAGGTGTTCTTTACCACATCA
TAGCCCAAAGAACACTACACCCGAAGGTGTATGGAAACAATTGGTAATCC
CAAAGAAGTTCCGCGCAACTATCATGAGGTACAATCACGATGAACCTAAC
GCAGCACACTTTGGCTTTGCAAAGACCGCCGACAAAACCAGAAGACGGTA
TTTTTGGCCAGGGATGTTGACTGATATCCAAACCTGGGTCAACACCTGCA
TTATATGCCAACAGGATAAAggaacaccatcaaagaaagcACCACTACTA
CCTATAGCAACTGGAGAACCCTGGAGGGCACTTCACTGTGATGTAGTTGG
ACCTTTCCTAAGAACAGACGCTGGGAACAGATACGTAGTGGTTTTTATTG
AACGACTCACCTCTGGGCCTGAGGCATTCGCGACTGCCTCGACCGAAGCA
CACGTCATTGCTGAATTGTTACTGCATCATATTTCGCTTTGGCGTTCCAA
GATACTTTGTCACTGATCAAGGTACCATTTTTTTGTCTCATTTGATGGCA
GAAGTTTGTGCGATGTTGAATATCAAAC Coding sequence (CDS) from alignment at sc0003513:5147..6874 >TCONS_00042590 ID=TCONS_00042590|Name=TCONS_00042590|organism=Clytia hemisphaerica|type=CDS|length=849bp|location=Sequence derived from alignment at sc0003513:5147..6874 (Clytia hemisphaerica)
TTTTCATCCGGAGACGATTATCTCTTCGAACCATCAGAGGAACTGAAACA
ACAAACATCCTTGAACATAACTCCGGCAATTTTTCGGGGAAGCAGTGGAA
GAGTTACCTTGAAAGTTACAAGTTTCAATGAGAATCCCGTAAAAATTCCT
GCCGGTTCTCTTCTGGGCACCCTAACAAAGATAACAACAATTGCACCGAT
CCAAGAGACAAGTCAAACTGATAGAAGAGTAACTGGTCCAGAAGACAACT
TACAAAGACGATTTGTGAAGGGATTCAGTAACTTGGCATCACCTTTATAC
AACCTGACGAAATTAGGAGTAAAATTAAATTGGGATGACACCTGTCAACA
GGTATTTGAGGAACTGAAACATACTCTCACGTCCGAACCTGTGGTTGCTC
TACCAGATTTTACAAAGAGATTCTACCTACAAACCGATGCGTCTAATACT
GGAATCGGCTGGACCTTAAGCCAAAGGTATGACAAGCTAGAAAAGGCCGT
GATCTATGGAGGACGTCGTTTGGATGAAGCAGAACAAAGACTATCTGTTA
TCGAGCGAGAAGTTTTAGCAATCGTGACTGCCGTAAAGAAACTTCACCCA
TACCTTCATGGTAGGCAATTCACAATTCTAACAGACCATAAGCCACTGAA
CTACATCCTGAGCACAAAGGACAGCACTGGTAAATTAGTCGCTGGAGTCT
ATATCTACAAGCTTATGATTTTATCATCGAGTATAGACCGGGAAAAGCAA
ACGAGAACGCAGACGGTTTGTCAAGAATTCCATGGGATCAGCTACAAGCA
GAAGCCCAAACTAAACCAAAAGTatccaaaagaaaaaacaaaccattGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00042590-exon-sc0003513-1491911889:5147..6874 | TCONS_00042590-exon-sc0003513-1491911889:5147..6874 | Clytia hemisphaerica | exon |
| TCONS_00042590-exon-sc0003513-1510915933:5147..6874 | TCONS_00042590-exon-sc0003513-1510915933:5147..6874 | Clytia hemisphaerica | exon |
| TCONS_00042590-exon-sc0003513-1575043694:5147..6874 | TCONS_00042590-exon-sc0003513-1575043694:5147..6874 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003513 | supercontig | sc0003513:5147..6874 . |
Blast
The following BLAST results are available for this feature:
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