TCONS_00042979 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042979
Unique NameTCONS_00042979
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length419

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042979 ID=TCONS_00042979|Name=TCONS_00042979|organism=Clytia hemisphaerica|type=transcript|length=419bp
CAGTTCGTTACGTCGACGATAGCCATGCCCGTTTCCAAACCGTCCATCAA
GCTGAAAAGTTCCAAGAAATTCTCAACCAACAAAATGAACACACCCAATA
CACTATGGAAACCGAGGATAcaacaaaaagtttgaacttTCTAGACGTGA
ACGTTCGAAATAACAATGGCCATTATGAATTGAAAATCCACCGTAAAAAT
GCGATCACTAACGTGCAAGTTAAACCTAATTCAGCTCATGACCTAAAGGT
GTTGAAGAGTATATTCTCTGGATTTCTTAACCGTGCGTACAGAATTTGTG
ATGACCGATTCCGTCAGGAAGAAATTCATTTCTTAATAAATtggtcatag
ctttcactaaatgcccccacataaagatcatgtcatgcacttataaagct
ttaatgctttaaagattaa
Run BLAST on NCBI

protein sequence of TCONS_00042979-protein

>TCONS_00042979-protein ID=TCONS_00042979-protein|Name=TCONS_00042979-protein|organism=Clytia hemisphaerica|type=polypeptide|length=115bp
VRYVDDSHARFQTVHQAEKFQEILNQQNEHTQYTMETEDTTKSLNFLDVN
VRNNNGHYELKIHRKNAITNVQVKPNSAHDLKVLKSIFSGFLNRAYRICD
DRFRQEEIHFLINWS
Run BLAST on NCBI

transcript from alignment at sc0003829:5465..5883

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042979 ID=TCONS_00042979|Name=TCONS_00042979|organism=Clytia hemisphaerica|type=transcript|length=419bp|location=Sequence derived from alignment at sc0003829:5465..5883 (Clytia hemisphaerica)
ttaatctttaaagcattaaagctttataagtgcatgacatgatctttatg
tgggggcatttagtgaaagctatgaccaATTTATTAAGAAATGAATTTCT
TCCTGACGGAATCGGTCATCACAAATTCTGTACGCACGGTTAAGAAATCC
AGAGAATATACTCTTCAACACCTTTAGGTCATGAGCTGAATTAGGTTTAA
CTTGCACGTTAGTGATCGCATTTTTACGGTGGATTTTCAATTCATAATGG
CCATTGTTATTTCGAACGTTCACGTCTAGAaagttcaaactttttgttgT
ATCCTCGGTTTCCATAGTGTATTGGGTGTGTTCATTTTGTTGGTTGAGAA
TTTCTTGGAACTTTTCAGCTTGATGGACGGTTTGGAAACGGGCATGGCTA
TCGTCGACGTAACGAACTG

Coding sequence (CDS) from alignment at sc0003829:5465..5883

>TCONS_00042979 ID=TCONS_00042979|Name=TCONS_00042979|organism=Clytia hemisphaerica|type=CDS|length=348bp|location=Sequence derived from alignment at sc0003829:5465..5883 (Clytia hemisphaerica)
ctatgaccaATTTATTAAGAAATGAATTTCTTCCTGACGGAATCGGTCAT
CACAAATTCTGTACGCACGGTTAAGAAATCCAGAGAATATACTCTTCAAC
ACCTTTAGGTCATGAGCTGAATTAGGTTTAACTTGCACGTTAGTGATCGC
ATTTTTACGGTGGATTTTCAATTCATAATGGCCATTGTTATTTCGAACGT
TCACGTCTAGAaagttcaaactttttgttgTATCCTCGGTTTCCATAGTG
TATTGGGTGTGTTCATTTTGTTGGTTGAGAATTTCTTGGAACTTTTCAGC
TTGATGGACGGTTTGGAAACGGGCATGGCTATCGTCGACGTAACGAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026736XLOC_026736Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042979-proteinTCONS_00042979-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042979-exon-sc0003829-1491911889:5465..5883TCONS_00042979-exon-sc0003829-1491911889:5465..5883Clytia hemisphaericaexon
TCONS_00042979-exon-sc0003829-1510915933:5465..5883TCONS_00042979-exon-sc0003829-1510915933:5465..5883Clytia hemisphaericaexon
TCONS_00042979-exon-sc0003829-1575043694:5465..5883TCONS_00042979-exon-sc0003829-1575043694:5465..5883Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003829supercontigsc0003829:5465..5883 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.337883	0	1.13928	0.496489	0.510712	1.00447	0.929214	1.35335	0.864626	1.16912	0	0.975751	0.88891	2.41697	0.0673852	0.650796	0	0.668423	0	0.56704	0	0.306546	0	0.378882	3.14507	5.14707	0.282012	0	0.25179	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042979 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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