TCONS_00044272 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044272
Unique NameTCONS_00044272
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length262

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044272 ID=TCONS_00044272|Name=TCONS_00044272|organism=Clytia hemisphaerica|type=transcript|length=262bp
NNTTAATTTCTACGTCAGATGGCCGTAATGTAGAGTTTTTTGATTCAATA
ATTATCGAACAAAAAACCAAAGTGGAAACAAGAGAAGTAGAGACAAAGTA
TTGCGTTCTGAAATATTTATTGTCGAAACGAGTTGAatgtaaaatgaaaa
tgtaaTTTAAGTTTTTGCGTTGCTGCGTCTTGATGTAGGATTTGGGGTGA
CGTTGGGGATGTACCATGCAATATAACTGATAACTTAAACGCCTAGGGCT
GCGGGACAGCCA
Run BLAST on NCBI

transcript from alignment at sc0005277:1..262

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044272 ID=TCONS_00044272|Name=TCONS_00044272|organism=Clytia hemisphaerica|type=transcript|length=262bp|location=Sequence derived from alignment at sc0005277:1..262 (Clytia hemisphaerica)
TGGCTGTCCCGCAGCCCTAGGCGTTTAAGTTATCAGTTATATTGCATGGT
ACATCCCCAACGTCACCCCAAATCCTACATCAAGACGCAGCAACGCAAAA
ACTTAAAttacattttcattttacatTCAACTCGTTTCGACAATAAATAT
TTCAGAACGCAATACTTTGTCTCTACTTCTCTTGTTTCCACTTTGGTTTT
TTGTTCGATAATTATTGAATCAAAAAACTCTACATTACGGCCATCTGACG
TAGAAATTAANN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027908XLOC_027908Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044272-exon-sc0005277-1491911889:1..262TCONS_00044272-exon-sc0005277-1491911889:1..262Clytia hemisphaericaexon
TCONS_00044272-exon-sc0005277-1510915933:1..262TCONS_00044272-exon-sc0005277-1510915933:1..262Clytia hemisphaericaexon
TCONS_00044272-exon-sc0005277-1575043694:1..262TCONS_00044272-exon-sc0005277-1575043694:1..262Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0005277supercontigsc0005277:1..262 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	3.76066	2.84034	5.73672	1.86052	2.15032	0.872795	0	0.71739	4.38515	0.745994	0.542457	1.69624	1.67865	3.34537	3.97497	2.76287	2.03506	4.14679	2.54956	0	3.0362	0	12.1106	1.5194	1.43708	5.94144	10.4141	17.9603	9.75839
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044272 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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