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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00044285 ID=TCONS_00044285|Name=TCONS_00044285|organism=Clytia hemisphaerica|type=transcript|length=902bp
ATTCTGGAGAAGAAGAACCAAGTATCTCAGATTACCTTAAAGATACACCA
ATTGAAGAAGATGAAAAGCCATTTGAAGAGAAGGATAAGGAAATGGATAC
TGATAATACAGGTGACCTGCATGGGGATGAGAACAAGGTTGAATATCAAG
CTACAGGCTTGAAATATGGCACCATGGCCCGTGACTTGCTTACTCAGTTG
AGGAACATTTCATACGAGTTTGATGATGCAAGTGAAAATAACAAAGAGCT
TTTTGAAGCCCTGTCTCCAATCCTACAAGCGTCAGAGCTGAAACGAAAAA
GGGAGAGTAACCTTCCTCTCCTCCCTCCATTAAAGAAGAAAAGCACACAA
GGTACAAAATACCTTTCTTTGAGCCTAcacaagaagaaaaattcaaacaa
acgTGTTGGCGAAAAAGCAGATcaagaaaagaaatcaaaattgatcAAGA
TTGAGGAAAATGAagtaaaaagagaaaagaaaacaattcagCTTATTGAA
GAAGAGGTGCCAATGGAAAATGTTGTGACTTATGGAAATGGAGACCAATT
TGAAGCCaaagaaatcatttttgttGAATCTGACGAGGAAGTAGATGACG
GTAATGACAAAAATTATCAAGTGCTTTACCCACGATGGAACCTCAGAATT
CAAGACATGGAGCTAATATCCAATGGTCGAATGCTTAATGATAAAGTTAT
AATGGCATTACAATCCATTCTCCNCTCAGAATTCAAGACATGGAGCTAAT
ATCCAATGGTCGAATGCTTAATGATAAAGTTATAATGGCATTACAATCCA
TTCTCCATAAAACATATCCTAACACCTATGGTCTCCAAGACACAGTCCTT
GGTCAAACCTTTGCATTTCTTCATGTAAAAGAACCTTTCCTACAAGTATG
CA Run BLAST on NCBI protein sequence of TCONS_00044285-protein >TCONS_00044285-protein ID=TCONS_00044285-protein|Name=TCONS_00044285-protein|organism=Clytia hemisphaerica|type=polypeptide|length=248bp
SGEEEPSISDYLKDTPIEEDEKPFEEKDKEMDTDNTGDLHGDENKVEYQA
TGLKYGTMARDLLTQLRNISYEFDDASENNKELFEALSPILQASELKRKR
ESNLPLLPPLKKKSTQGTKYLSLSLHKKKNSNKRVGEKADQEKKSKLIKI
EENEVKREKKTIQLIEEEVPMENVVTYGNGDQFEAKEIIFVESDEEVDDG
NDKNYQVLYPRWNLRIQDMELISNGRMLNDKVIMALQSILXSEFKTWS Run BLAST on NCBI transcript from alignment at sc0005300:3755..4656 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00044285 ID=TCONS_00044285|Name=TCONS_00044285|organism=Clytia hemisphaerica|type=transcript|length=902bp|location=Sequence derived from alignment at sc0005300:3755..4656 (Clytia hemisphaerica)
TGCATACTTGTAGGAAAGGTTCTTTTACATGAAGAAATGCAAAGGTTTGA
CCAAGGACTGTGTCTTGGAGACCATAGGTGTTAGGATATGTTTTATGGAG
AATGGATTGTAATGCCATTATAACTTTATCATTAAGCATTCGACCATTGG
ATATTAGCTCCATGTCTTGAATTCTGAGNGGAGAATGGATTGTAATGCCA
TTATAACTTTATCATTAAGCATTCGACCATTGGATATTAGCTCCATGTCT
TGAATTCTGAGGTTCCATCGTGGGTAAAGCACTTGATAATTTTTGTCATT
ACCGTCATCTACTTCCTCGTCAGATTCaacaaaaatgatttctttGGCTT
CAAATTGGTCTCCATTTCCATAAGTCACAACATTTTCCATTGGCACCTCT
TCTTCAATAAGctgaattgttttcttttctctttttactTCATTTTCCTC
AATCTTgatcaattttgatttcttttcttgATCTGCTTTTTCGCCAACAc
gtttgtttgaatttttcttcttgtgTAGGCTCAAAGAAAGGTATTTTGTA
CCTTGTGTGCTTTTCTTCTTTAATGGAGGGAGGAGAGGAAGGTTACTCTC
CCTTTTTCGTTTCAGCTCTGACGCTTGTAGGATTGGAGACAGGGCTTCAA
AAAGCTCTTTGTTATTTTCACTTGCATCATCAAACTCGTATGAAATGTTC
CTCAACTGAGTAAGCAAGTCACGGGCCATGGTGCCATATTTCAAGCCTGT
AGCTTGATATTCAACCTTGTTCTCATCCCCATGCAGGTCACCTGTATTAT
CAGTATCCATTTCCTTATCCTTCTCTTCAAATGGCTTTTCATCTTCTTCA
ATTGGTGTATCTTTAAGGTAATCTGAGATACTTGGTTCTTCTTCTCCAGA
AT Coding sequence (CDS) from alignment at sc0005300:3755..4656 >TCONS_00044285 ID=TCONS_00044285|Name=TCONS_00044285|organism=Clytia hemisphaerica|type=CDS|length=747bp|location=Sequence derived from alignment at sc0005300:3755..4656 (Clytia hemisphaerica)
TTAGCTCCATGTCTTGAATTCTGAGNGGAGAATGGATTGTAATGCCATTA
TAACTTTATCATTAAGCATTCGACCATTGGATATTAGCTCCATGTCTTGA
ATTCTGAGGTTCCATCGTGGGTAAAGCACTTGATAATTTTTGTCATTACC
GTCATCTACTTCCTCGTCAGATTCaacaaaaatgatttctttGGCTTCAA
ATTGGTCTCCATTTCCATAAGTCACAACATTTTCCATTGGCACCTCTTCT
TCAATAAGctgaattgttttcttttctctttttactTCATTTTCCTCAAT
CTTgatcaattttgatttcttttcttgATCTGCTTTTTCGCCAACAcgtt
tgtttgaatttttcttcttgtgTAGGCTCAAAGAAAGGTATTTTGTACCT
TGTGTGCTTTTCTTCTTTAATGGAGGGAGGAGAGGAAGGTTACTCTCCCT
TTTTCGTTTCAGCTCTGACGCTTGTAGGATTGGAGACAGGGCTTCAAAAA
GCTCTTTGTTATTTTCACTTGCATCATCAAACTCGTATGAAATGTTCCTC
AACTGAGTAAGCAAGTCACGGGCCATGGTGCCATATTTCAAGCCTGTAGC
TTGATATTCAACCTTGTTCTCATCCCCATGCAGGTCACCTGTATTATCAG
TATCCATTTCCTTATCCTTCTCTTCAAATGGCTTTTCATCTTCTTCAATT
GGTGTATCTTTAAGGTAATCTGAGATACTTGGTTCTTCTTCTCCAGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00044285-exon-sc0005300-1491911889:3755..4656 | TCONS_00044285-exon-sc0005300-1491911889:3755..4656 | Clytia hemisphaerica | exon |
| TCONS_00044285-exon-sc0005300-1510915933:3755..4656 | TCONS_00044285-exon-sc0005300-1510915933:3755..4656 | Clytia hemisphaerica | exon |
| TCONS_00044285-exon-sc0005300-1575043694:3755..4656 | TCONS_00044285-exon-sc0005300-1575043694:3755..4656 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0005300 | supercontig | sc0005300:3755..4656 . |
Blast
The following BLAST results are available for this feature:
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