TCONS_00044294 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044294
Unique NameTCONS_00044294
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length687

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044294 ID=TCONS_00044294|Name=TCONS_00044294|organism=Clytia hemisphaerica|type=transcript|length=687bp
TACCTCTTAGGGATTGCTGTGATGTTTCGATGTTAGATTGAGCAGCTGCT
GAATTGTTCATTAACGTTAGTGTTTCTGCTGATTTATCAAAAGCATCATC
ACCTGGAATGtgCTGATTTGGACGCACAAGGAATCGATGAGTCGGATTGT
GACGAGCAGGATGCCCTTAGCACAGGAGTTGATGCTGTAAAGACTTACAC
ATGCTTTTGTAACATGGCTTGGCAATTGAAGGTGGATGCCACACGCCACA
CACTGGTTCCTGGCACTTCTTATCTAAAGGTGATATTTCAGTATTGTTAC
TGTTTTCATTACTTCCAGTGAGATCAACTTCCATCGTTCTTTGTCCTAAG
GTGATGTTTCGATCTTATCAGTGCTCTCGCAACATTCAGAAGAATCAATT
TCCATTGTTGTTTGGTCTAAAAGATCCAAGGTGCTCTTTCCAATCCTTTC
GAACTTGCCATCTGGTCAAGCAAGTCTTGATGACATTGTCAGGAAGATGG
TTTGTGCACTTTTTGGATACGTCCTTGAAAAAGGTAAACGCTCTTTCCTC
ATTTTCCGTATTGCAAGATGTAAGCGCTACCAAACGATACTGGATCGCAG
CCTCTCTCACAATATTGTGTTCGTATTGACCGTAGAGTTTTCTCGTAGTC
AATTTTTTACCGATCGGCATCAATTTCTTCATCATCA
Run BLAST on NCBI

transcript from alignment at sc0005312:1233..3770-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044294 ID=TCONS_00044294|Name=TCONS_00044294|organism=Clytia hemisphaerica|type=transcript|length=2538bp|location=Sequence derived from alignment at sc0005312:1233..3770- (Clytia hemisphaerica)
TACCTCTTAGGGATTGCTGTGATGTTTCGATGTTAGATTGAGCAGCTGCT
GAATTGTTCATTAACGTTAGTGTTTCTGCTGATTTATCAAAAGCATCATC
ACCTGGAATGTGGTAAATAAAATTTTATTGTATGTTATTGTTTTGAACCA
TTTTTTTCATTTACTGGGTAGAGGGATTATTATTCAAGCATTGTTGAAGT
CAGTGAGTTGTAATTCATATATCATCCAAATAAACTCCTATAAGTTTTTT
TTTACCTTGTATAGCTGATTTGGACGCACAAGGAATCGATGAGTCGGATT
GTGACGAGCAGGATGCCCTTAGCACAGGAGTTGATGCTGTAAAGGTAAAA
ATTCAATGTGACATTTTTTACTGTTTGCAAACTTTTTCCTTTATGAAATT
ACACAATACAATAAATTTTATCCTCAAAAATTATACGTTTTTATAAACAA
TTGCCAATTGTTTGATAGAAATTTAAAATCTGTCAGTACTGTTTGCAAAC
TATTGAATAAATGTTTCTAGACTTACACATGCTTTTGTAACATGGCTTGG
CAATTGAAGGTGGATGCCACACGCCACACACTGGTTCCTGGCACTTCTTA
TCTAAAGGTATGTGATTTTGTTATTGTTGATGTAACTTTAGAAATTTAGC
TGAAACTTCAGTCTTTCGCACTCAGGATTTGGTTATTTAAAATGATTTCT
CTTTCTGAAATAAAATTTCTGCTTTATAAACCGAGAATAAAAGTATTCTT
AGGATACCTTTGATACAACTCATATTTGGTGTGGATAGAGTCAGTTTGTT
GAATGGAGTTGTAGGCGTCTTGTTGAGTTGTTTTGATGTAAACATAGATC
TTTGTGAAAACGGTGATTGTTTTTCTGTAAATGTAAATTTTAATTGTAAA
GTTACTTTGCTTTTTCTCTTATTAGGCATAGAGGAAATATAATGTTACAT
CTGTCATTCACACTCACTTGATTTTTCAGGTGATATTTCAGTATTGTTAC
TGTTTTCATTACTTCCAGTGAGATCAACTTCCATCGTTCTTTGTCCTAAG
GTAAGAAGTTACGACTTGAAAATATGTCTTTGAATTGAAAGCTTCATGAA
TAAAATGATATTTCAGCACATATGCAATATTACTTTCCACCTGTTAAGAT
CTACCTCTACACTTGAAACTTAATTCTTTACCTCCTTTCTCAGGTGATGT
TTCGATCTTATCAGTGCTCTCGCAACATTCAGAAGAATCAATTTCCATTG
TTGTTTGGTCTAAAAGGTAAGAAATTTGATATTCCTGTTACGAGCCATTC
TATGGGAATTACAGTGAGTGACTGCCTCTAACTCTTTGATGGGCTTTGGG
AGGAAAAATCAAATGTCAATGTTGTACCGTTTTCTTTTGATTCTGAGACA
TCAGCAAATTTGAACAGTCCACGTTTAGCCCTAGAATGTTTGTTCCCCGC
TTGTTTCTTGCTTGCCTTCTTCGTCGTGTTTATGTTGCTTACTGACGTTT
GCTTGTTGCTTGCTTTCTTTGACTATAAGGATAAATTTAGGCAAATAATA
GTTTGGTTGACATTATTTTCACAGGAATTCGATTTTGTCGATCTCAGCTA
TATAAGTGTATATTCAGTTTGACTGCTAGGATGAAACTTGAGAAAATTCA
TTGTTTTTACCAAATCTTTCCCTTCATATGGATTGGGTTTGTTTAAGCTT
GAAACTATTCTCTTCTTTCCATCTTCTTCCAACCTCAAGAATGCAGGTAG
TTTTCTGTCCTCCAATTTGCTCCATTTATCTGCAAGATACCTAATTAATA
GAAAATATAGCCTGATTTATTGATAATTCCAATCTTGGTAGCCTTTTTGA
TTGAGGGAGGGTGCAGTCGCAAAAACTCATTAAAATGGCATTGTTTGTTG
TTGCCCATCATTTATATTAGAGTTGATTAGTAGAGTAAGACTAAGACTAG
ATTATTTTTCATATCCAGTCGTATACCGTATATTTCTGATTTTCTCAAAT
ACTCACTTGTGTTCTTTTTCTGTGGAGGAGCTTCTGAAATGATGGATCGA
TGGATAGGTTTTGTGGTGGGCTTTTGACAAATCGAAAAATTCAATACCAT
TGCGTTTTTCCTCCCAAACGTCACATTCAAGGAAATCGCTGATTCTCTCC
AGATGGGCCTGCCAATCTGACACGTTATCCTTGATTAAATCAAAAGGGAC
AACAGTGTTAGTTCTTTCCTCTTTCAGTTTTTGACCATGTTCACTGATTG
AATTTTTGCCTGTGCTTATTTTAGATCCAAGGTGCTCTTTCCAATCCTTT
CGAACTTGCCATCTGGTCAAGCAAGTCTTGATGACATTGTCAGGAAGATG
GTTTGTGCACTTTTTGGATACGTCCTTGAAAAAGGTAAACGCTCTTTCCT
CATTTTCCGTATTGCAAGATGTAAGCGCTACCAAACGATACTGGATCGCA
GCCTCTCTCACAATATTGTGTTCGTATTGACCGTAGAGTTTTCTCGTAGT
CAATTTTTTACCGATCGGCATCAATTTCTTCATCATCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027929XLOC_027929Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044294-exon-sc0005312-1575043694:3659..3770TCONS_00044294-exon-sc0005312-1575043694:3659..3770Clytia hemisphaericaexon
TCONS_00044294-exon-sc0005312-1575043694:3427..3506TCONS_00044294-exon-sc0005312-1575043694:3427..3506Clytia hemisphaericaexon
TCONS_00044294-exon-sc0005312-1575043694:3164..3250TCONS_00044294-exon-sc0005312-1575043694:3164..3250Clytia hemisphaericaexon
TCONS_00044294-exon-sc0005312-1575043694:2721..2791TCONS_00044294-exon-sc0005312-1575043694:2721..2791Clytia hemisphaericaexon
TCONS_00044294-exon-sc0005312-1575043694:2505..2577TCONS_00044294-exon-sc0005312-1575043694:2505..2577Clytia hemisphaericaexon
TCONS_00044294-exon-sc0005312-1575043694:1233..1496TCONS_00044294-exon-sc0005312-1575043694:1233..1496Clytia hemisphaericaexon
TCONS_00044294-exon-sc0005312-1510915933:3659..3770TCONS_00044294-exon-sc0005312-1510915933:3659..3770Clytia hemisphaericaexon
TCONS_00044294-exon-sc0005312-1510915933:3427..3506TCONS_00044294-exon-sc0005312-1510915933:3427..3506Clytia hemisphaericaexon
TCONS_00044294-exon-sc0005312-1510915933:3164..3250TCONS_00044294-exon-sc0005312-1510915933:3164..3250Clytia hemisphaericaexon
TCONS_00044294-exon-sc0005312-1510915933:2721..2791TCONS_00044294-exon-sc0005312-1510915933:2721..2791Clytia hemisphaericaexon
TCONS_00044294-exon-sc0005312-1510915933:2505..2577TCONS_00044294-exon-sc0005312-1510915933:2505..2577Clytia hemisphaericaexon
TCONS_00044294-exon-sc0005312-1510915933:1233..1496TCONS_00044294-exon-sc0005312-1510915933:1233..1496Clytia hemisphaericaexon
TCONS_00044294-exon-sc0005312-1491911889:3659..3770TCONS_00044294-exon-sc0005312-1491911889:3659..3770Clytia hemisphaericaexon
TCONS_00044294-exon-sc0005312-1491911889:3427..3506TCONS_00044294-exon-sc0005312-1491911889:3427..3506Clytia hemisphaericaexon
TCONS_00044294-exon-sc0005312-1491911889:3164..3250TCONS_00044294-exon-sc0005312-1491911889:3164..3250Clytia hemisphaericaexon
TCONS_00044294-exon-sc0005312-1491911889:2721..2791TCONS_00044294-exon-sc0005312-1491911889:2721..2791Clytia hemisphaericaexon
TCONS_00044294-exon-sc0005312-1491911889:2505..2577TCONS_00044294-exon-sc0005312-1491911889:2505..2577Clytia hemisphaericaexon
TCONS_00044294-exon-sc0005312-1491911889:1233..1496TCONS_00044294-exon-sc0005312-1491911889:1233..1496Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0005312supercontigsc0005312:1233..3770 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	8.61112	9.22165	7.28027	7.55749	2.84728	5.09429	4.57538	2.93361	4.41819	3.19931	0	0	0	0	0	0	0	0	0	0	3.11429	4.95308	0	0	0	0.167864
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044294 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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