TCONS_00044299 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044299
Unique NameTCONS_00044299
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2597

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044299 ID=TCONS_00044299|Name=TCONS_00044299|organism=Clytia hemisphaerica|type=transcript|length=2597bp
CTCAAGCCTTTTGTTTATTCCTTTACATTTTCTCCCGGAATAAAAGACAA
TTTCCAAAGAATGATGGCGGGATGGGAGATTGacattcttatatttttta
tgaatgggatttcaattcttttgttttcaaagccagaaaattcaatgggg
atggggataaaaaaaataatagatttttggcagtgaggattggtttattt
gattattttccgtggggacaaaaattggaggataatgtTCCACCGGGGAC
AATATTTAGGCCAACTTTTCCAGTGAGAAGGGTTCCCATTGGGTCTGTTA
AGGGTGTCAAAAGTAGCGAATCATATACGGAATGGTACATAAGGAGGTAA
CCTTGAAGAGAATGCTTTTTCTCGAGGGACAGTCCATTTCTAAAACAATG
ATAACAAAGGCTTTCATTGAAATATGTATAAAATATCGACCCTTTATTCC
CTTGATTCGAGCTTAGCTCCCTGTCATCTGTTGGTTCTCTTCGAAGCAca
gaaaaatttgccaaaaggatacgaaaaacaaccaaaaaagagacaacttt
ttaaaaatgtttcgaTAATAAAATGATTAAGGGAGGGATAGAAGATTCAG
TTATTATTATAACAAAGAAACtctactacatgtttttttataagaacatc
caaaatttttgaagccttcggatgttcttaactttttgggtttcaagcct
aaaaatgttcctaaatgctaaaatgttcttattttctccattttgtgacc
atttttaccaatttatttttttcttcaaattcggGTGTTTTCAAGTCTGC
TAAGCCTCAAAATGTCCGAAACTTGTGCTTAGTATTTTAGTCAACaaggc
cttatgttcttatatagtttgttcttataaaaaaaacgtctaTAACATTT
GGTAGACAAATGACTACAGGTGTAAGaggtttatttaatttttaccactt
tcacaaaaattcaaaaaattacaaagaaaaaaattacagaaattacttAT
TGACACTAGTATCGTGATCCAAAAATCCGAAAATCTAANTCAAAAAATta
ctaagaaaaaaattacaaaaattacttATTGACACTAGTATCGTGATCCA
AAAAtccgaaaatctaacaaaaattACACACGACAATAATCAAACTTTAC
AATCTTTTAGTTATGTttcttttaaaagtttcaaaaggtTCAAATGTTTC
TCAAACCAGCTCTCTTTGTCATTTCCGAAGCGTAGAAATCTAACATCTCC
GAAAATGGATCTCTTTTTGCTTCACGACACACATATTTTGGGCTCGAGAA
ACTTCCTTCGTTGACACATCTTCTCATACCGGTATAGGGATTCCCTTCGC
GGCAACATCTTCCATTGTTTCCCTCACAGCCAGCGTTTCCCAGTGGAATA
CAGCTTCGTCTTCTTGCAAATTGGCCACGGTAGTAATCACTTAAGGGATC
TCTTTTTGCTTCACGACACACATATTTTGGGCTCGAGAAACTTCCTTCGT
TGACACATCTTCTCATTGAGCCAGTATAGGGATTCCCTTCACGACAACAT
CTCCCATTGTTTCCCTCACAGCCAGCGTTTCCCAATGGAATACAGCTCCC
TCTTCTTGCAAATTGGCCACGGTAGTAATCACTTAAGGGATCTCTTTTTG
CTTCACGACAGACATATTTTGCGTTCGAGAAACTTCCTTCGTTGACACAT
CTTCTCATTGAGCCAGTATAGGGATTCCCTTCACGACAACATCTCCCATT
GTTTCCCTCACAGCCAGCGTTTCCCAATGGAATACAGCTCCCTCTTCTTG
TAAATTGGCCACGGTAGTAATCACTTAAGGGATCTCTTTTTGCTTCACGA
CAGACATATTTTGGGTTCGAGAAACTTCCTTCGTTGACACATCTTCTCAT
TGAGCCAGTATAGGGATTCCCTTCACGACAACATCTCCCATTGTTTCCCT
CACAGCCAGCGTTTCCCAGTGGAATACAGCTCCCTCTTCTTGCAAATTGG
CCACGGTAGTAATCATTTAAGGGATCTCTTTTTGCTTCACGACAGACATA
TTTTGGGTTCGAGAAACTTCCTTCGTTGACACATCTTCTCATTGAACCAG
TATAGGGATTCCCTTCGCGACAACATTTCCCATTGTTTCCCTCACAGCCA
GCGTTACCCAGTGGAACACAGCTTCCTTGTACTTTTTCAAAAGCCAAAAG
TGCGAAAAGTATCGTCAGTAACATTGTCTTCATCTTCATATAATTTAAAA
CCTATAAAGaataattgacatttttcataaTAATCCTTAAACTGTGTTAC
AAACAGTACATTTGATTAAACAACGGTGATATATTGCTATAACAAGAAGG
TGAGAGACTCCTGCCTATAGGTTCTTCACTAGTCTCCCTAGTGCTATAAT
TATTAATGATTTGATGCCGAGTGCCGAATGCCAATATGTAGTgtatcttt
aaaagaaaagtgACTACTAACTTCACTGCAACTTCAANGCCTATAGGTTC
TTCACTAGTCTCCCTAGTGCTATAATTATTAATGATTTGATGCCGAGTGC
CGAATGCCAATATGTAGTgtatctttaaaagaaaagtgACTACTAAC
Run BLAST on NCBI

transcript from alignment at sc0005326:6597..9385+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044299 ID=TCONS_00044299|Name=TCONS_00044299|organism=Clytia hemisphaerica|type=transcript|length=2789bp|location=Sequence derived from alignment at sc0005326:6597..9385+ (Clytia hemisphaerica)
CTCAAGCCTTTTGTTTATTCCTTTACATTTTCTCCCGGAATAAAAGACAA
TTTCCAAAGAATGATGGCGGGATGGGAGATTGacattcttatatttttta
tgaatgggatttcaattcttttgttttcaaagccagaaaattcaatgggg
atggggataaaaaaaataatagatttttggcagtgaggattggtttattt
gattattttccgtggggacaaaaattggaggataatgtTCCACCGGGGAC
AATATTTAGGCCAACTTTTCCAGTGAGAAGGGTTCCCATTGGGTCTGTTA
AGGGTGTCAAAAGTAGCGAATCATATACGGAATGGTACATAAGGAGGTAA
CCTTGAAGAGAATGCTTTTTCTCGAGGGACAGTCCATTTCTAAAACAATG
ATAACAAAGGCTTTCATTGAAATATGTATAAAATATCGACCCTTTATTCC
CTTGATTCGAGCTTAGCTCCCTGTCATCTGTTGGTTCTCTTCGAAGCAca
gaaaaatttgccaaaaggatacgaaaaacaaccaaaaaagagacaacttt
ttaaaaatgtttcgaTAATAAAATGATTAAGGGAGGGATAGAAGATTCAG
TTATTATTATAACAAAGAAACtctactacatgtttttttataagaacatc
caaaatttttgaagccttcggatgttcttaactttttgggtttcaagcct
aaaaatgttcctaaatgctaaaatgttcttattttctccattttgtgacc
atttttaccaatttatttttttcttcaaattcggGTGTTTTCAAGTCTGC
TAAGCCTCAAAATGTCCGAAACTTGTGCTTAGTATTTTAGTCAACaaggc
cttatgttcttatatagtttgttcttataaaaaaaacgtctaTAACATTT
GGTAGACAAATGACTACAGGTGTAAGaggtttatttaatttttaccactt
tcacaaaaattcaaaaaattacaaagaaaaaaattacagaaattacttAT
TGACACTAGTATCGTGATCCAAAAATCCGAAAATCTAANTCAAAAAATta
ctaagaaaaaaattacaaaaattacttATTGACACTAGTATCGTGATCCA
AAAAtccgaaaatctaacaaaaattACACACGACAATAATCAAACTTTAC
AATCTTTTAGTTATGTttcttttaaaagtttcaaaaggtTCAAATGTTTC
TCAAACCAGCTCTCTTTGTCATTTCCGAAGCGTAGAAATCTAACATCTCC
GAAAATGGATCTCTTTTTGCTTCACGACACACATATTTTGGGCTCGAGAA
ACTTCCTTCGTTGACACATCTTCTCATACCGGTATAGGGATTCCCTTCGC
GGCAACATCTTCCATTGTTTCCCTCACAGCCAGCGTTTCCCAGTGGAATA
CAGCTTCGTCTTCTTGCAAATTGGCCACGGTAGTAATCACTTAAGGGATC
TCTTTTTGCTTCACGACACACATATTTTGGGCTCGAGAAACTTCCTTCGT
TGACACATCTTCTCATTGAGCCAGTATAGGGATTCCCTTCACGACAACAT
CTCCCATTGTTTCCCTCACAGCCAGCGTTTCCCAATGGAATACAGCTCCC
TCTTCTTGCAAATTGGCCACGGTAGTAATCACTTAAGGGATCTCTTTTTG
CTTCACGACAGACATATTTTGCGTTCGAGAAACTTCCTTCGTTGACACAT
CTTCTCATTGAGCCAGTATAGGGATTCCCTTCACGACAACATCTCCCATT
GTTTCCCTCACAGCCAGCGTTTCCCAATGGAATACAGCTCCCTCTTCTTG
TAAATTGACCACGGTAGTAATCACTTAAGGGGTCTCTTTTTGCTTCACGA
CACACATATTTTGGGTTCGAGAAACTTCCTTCGTTGACACATCTTCTCAT
TGAGCCAGTATAGGGATTCCCTTCACGACAACATCTCCCATTGTTTCCCT
CACAGCCAGCGTTTCCCAATGGAATACAGCTCCCTCTTCTTGTAAATTGG
CCACGGTAGTAATCACTTAAGGGATCTCTTTTTGCTTCACGACAGACATA
TTTTGGGTTCGAGAAACTTCCTTCGTTGACACATCTTCTCATTGAGCCAG
TATAGGGATTCCCTTCACGACAACATCTCCCATTGTTTCCCTCACAGCCA
GCGTTTCCCAGTGGAATACAGCTCCCTCTTCTTGCAAATTGGCCACGGTA
GTAATCATTTAAGGGATCTCTTTTTGCTTCACGACAGACATATTTTGGGT
TCGAGAAACTTCCTTCGTTGACACATCTTCTCATTGAACCAGTATAGGGA
TTCCCTTCGCGACAACATTTCCCATTGTTTCCCTCACAGCCAGCGTTACC
CAGTGGAACACAGCTTCCTTGTACTTTTTCAAAAGCCAAAAGTGCGAAAA
GTATCGTCAGTAACATTGTCTTCATCTTCATATAATTTAAAACCTATAAA
GaataattgacatttttcataaTAATCCTTAAACTGTGTTACAAACAGTA
CATTTGATTAAACAACGGTGATATATTGCTATAACAAGAAGGTGAGAGAC
TCCTGCCTATAGGTTCTTCACTAGTCTCCCTAGTGCTATAATTATTAATG
ATTTGATGCCGAGTGCCGAATGCCAATATGTAGTgtatctttaaaagaaa
agtgACTACTAACTTCACTGCAACTTCAANGCCTATAGGTTCTTCACTAG
TCTCCCTAGTGCTATAATTATTAATGATTTGATGCCGAGTGCCGAATGCC
AATATGTAGTgtatctttaaaagaaaagtgACTACTAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027934XLOC_027934Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044299-exon-sc0005326-1491911889:6597..8294TCONS_00044299-exon-sc0005326-1491911889:6597..8294Clytia hemisphaericaexon
TCONS_00044299-exon-sc0005326-1510915933:6597..8294TCONS_00044299-exon-sc0005326-1510915933:6597..8294Clytia hemisphaericaexon
TCONS_00044299-exon-sc0005326-1575043694:6597..8294TCONS_00044299-exon-sc0005326-1575043694:6597..8294Clytia hemisphaericaexon
TCONS_00044299-exon-sc0005326-1491911889:8487..9385TCONS_00044299-exon-sc0005326-1491911889:8487..9385Clytia hemisphaericaexon
TCONS_00044299-exon-sc0005326-1510915933:8487..9385TCONS_00044299-exon-sc0005326-1510915933:8487..9385Clytia hemisphaericaexon
TCONS_00044299-exon-sc0005326-1575043694:8487..9385TCONS_00044299-exon-sc0005326-1575043694:8487..9385Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0005326supercontigsc0005326:6597..9385 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.54117	4.13621	5.16915	4.58132	50.449	35.941	29.0402	28.4193	9.0969	14.5578	3.96894	6.70832	4.89776	4.09437	0.846763	0.771765	1.14874	1.67576	1.597	0.811177	0.707526	0.527642	0.59091	0.605958	0.709996	0.677656	0.630637	0.276091	0.253066	0.175755
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044299 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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