TCONS_00044358 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044358
Unique NameTCONS_00044358
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length428

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044358 ID=TCONS_00044358|Name=TCONS_00044358|organism=Clytia hemisphaerica|type=transcript|length=428bp
GCCAACTCGGTTAATTGAAATTCGTGTTTTTCAGCGTCTTTCACGTGCAC
TAAACAAAGTGGAAGCGCTTGGAGTTGGAAGAATTTGTTGTTCGTTTACG
TTCTTACTGGTTTAGTTATTAATTTATACAATAATCATGGCTGATAAAGA
TTATGATAGCTCCGATGATGAAGAAAAGACCATCGCTGACGATATTGTTG
TCACAAAATATAATATGGCTGCAAAAATAGCAAATGGTAAGTTTCATTTT
TACTTCCCCTATTCTTCTCTACTCAAGTGGGTCCCCATATTCTTAATGCC
TATAGTAGAATGAGCTTGATTCCCTGTTTCCAGTCAttagaaaactttca
aaatgacACCCATATCAGTTTTAGTCTGCCGAGTACTGGCTGAGCAATCT
TTTGAACTTTATACCGTCAACACCGCCA
Run BLAST on NCBI

transcript from alignment at sc0005446:2943..3370

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044358 ID=TCONS_00044358|Name=TCONS_00044358|organism=Clytia hemisphaerica|type=transcript|length=428bp|location=Sequence derived from alignment at sc0005446:2943..3370 (Clytia hemisphaerica)
TGGCGGTGTTGACGGTATAAAGTTCAAAAGATTGCTCAGCCAGTACTCGG
CAGACTAAAACTGATATGGGTgtcattttgaaagttttctaaTGACTGGA
AACAGGGAATCAAGCTCATTCTACTATAGGCATTAAGAATATGGGGACCC
ACTTGAGTAGAGAAGAATAGGGGAAGTAAAAATGAAACTTACCATTTGCT
ATTTTTGCAGCCATATTATATTTTGTGACAACAATATCGTCAGCGATGGT
CTTTTCTTCATCATCGGAGCTATCATAATCTTTATCAGCCATGATTATTG
TATAAATTAATAACTAAACCAGTAAGAACGTAAACGAACAACAAATTCTT
CCAACTCCAAGCGCTTCCACTTTGTTTAGTGCACGTGAAAGACGCTGAAA
AACACGAATTTCAATTAACCGAGTTGGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027991XLOC_027991Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044358-exon-sc0005446-1491911889:2943..3370TCONS_00044358-exon-sc0005446-1491911889:2943..3370Clytia hemisphaericaexon
TCONS_00044358-exon-sc0005446-1510915933:2943..3370TCONS_00044358-exon-sc0005446-1510915933:2943..3370Clytia hemisphaericaexon
TCONS_00044358-exon-sc0005446-1575043694:2943..3370TCONS_00044358-exon-sc0005446-1575043694:2943..3370Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0005446supercontigsc0005446:2943..3370 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
82.2614	90.6275	109.233	115.447	0.467229	0.374899	0.666959	1.27775	37.9353	40.128	64.9289	53.4953	57.8302	59.2588	35.8548	33.267	25.6453	34.9693	14.7188	17.3578	78.2982	71.0884	51.0239	54.8007	0.372056	0.172427	43.0322	46.0374	38.2213	34.9335
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044358 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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