TCONS_00044494 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044494
Unique NameTCONS_00044494
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length445

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044494 ID=TCONS_00044494|Name=TCONS_00044494|organism=Clytia hemisphaerica|type=transcript|length=445bp
NGACTATTCGAGTAACACTTTTACGAAAAAGATCATACGCCATATCGAAT
ATTGAGTGATTGTGGTCAGTAACATTCCTTGAGGCTGATTGAGGAGGTAC
GCGCTGCTGTGAagaacagacaaaatatttgcaGGAGTTGCTTAATTATT
CATCATGGCATTAAAAAGACTTTGTTGtggtttgagatcaagcaaacgCT
TATTATGTACGTATTAATGCAACACAAGAAGGGGGTCAATTTGTGATCAT
GTTTTGTGACATGTGATGTTCAATGACATTTATAACTTTTACATATACTA
AGGCAGCAATCACTAATACAtttccattttatttgaatctttttcggtca
gtagtagaaaatttcaaattctctGGTGCTGGTGATCATTATTATTCAGC
TCAAACACTTTAAATAATTCCCAAataaaataagcacttttgaAG
Run BLAST on NCBI

transcript from alignment at sc0005681:1773..2217

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044494 ID=TCONS_00044494|Name=TCONS_00044494|organism=Clytia hemisphaerica|type=transcript|length=445bp|location=Sequence derived from alignment at sc0005681:1773..2217 (Clytia hemisphaerica)
CTtcaaaagtgcttattttatTTGGGAATTATTTAAAGTGTTTGAGCTGA
ATAATAATGATCACCAGCACCagagaatttgaaattttctactactgacc
gaaaaagattcaaataaaatggaaaTGTATTAGTGATTGCTGCCTTAGTA
TATGTAAAAGTTATAAATGTCATTGAACATCACATGTCACAAAACATGAT
CACAAATTGACCCCCTTCTTGTGTTGCATTAATACGTACATAATAAGcgt
ttgcttgatctcaaaccaCAACAAAGTCTTTTTAATGCCATGATGAATAA
TTAAGCAACTCCtgcaaatattttgtctgttctTCACAGCAGCGCGTACC
TCCTCAATCAGCCTCAAGGAATGTTACTGACCACAATCACTCAATATTCG
ATATGGCGTATGATCTTTTTCGTAAAAGTGTTACTCGAATAGTCN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028123XLOC_028123Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044494-exon-sc0005681-1491911889:1773..2217TCONS_00044494-exon-sc0005681-1491911889:1773..2217Clytia hemisphaericaexon
TCONS_00044494-exon-sc0005681-1510915933:1773..2217TCONS_00044494-exon-sc0005681-1510915933:1773..2217Clytia hemisphaericaexon
TCONS_00044494-exon-sc0005681-1575043694:1773..2217TCONS_00044494-exon-sc0005681-1575043694:1773..2217Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0005681supercontigsc0005681:1773..2217 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.750658	0.610614	0.933168	0.955184	8.13993	8.65475	6.56212	9.55048	1.67885	2.66529	3.05745	1.51989	2.65249	0.556024	0.572819	0.888719	1.27513	0.921128	0.971472	0.551325	2.06675	0.63268	1.40562	1.3557	4.60059	7.179	0	0.363134	0	1.08771
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044494 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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