TCONS_00044518 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044518
Unique NameTCONS_00044518
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length662

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044518 ID=TCONS_00044518|Name=TCONS_00044518|organism=Clytia hemisphaerica|type=transcript|length=662bp
CTTAACATCAACATACCCAAACACGACATTAAAATAACGTACAAAAAACA
TCTACTTCCATATGtacatatataaaaaaagccaaaacattttagccaat
cagagctaaaaaaacaatcacatgacacatcaaaaaaattttaaaccaat
gaaataaaataaaaataaaacaatagcaTCTTAGTCAACAGAAACAATAA
TAGCCTAGCCAACCAGAATGCAAAGAAACTACCACgtgatattttgaaat
aacttAAACCAATGAGATcgaataaatttaaaaacaaaagatacACGCCC
ACCACCACCACTCAAAGTCCAGAAACAAGCACCCACCACCATACCACCTC
AAAAAACGTATCAACCAATGAAAACTTGTGATACTAGCACGTGACACACA
AGAAGAAACTCCAACCAATAAGATAAACCTAACATTTTTTTANNNNNNNN
NNNNNNAATCATTTACATATTTAAAACTaaacccctttttctaaacaaat
tACAGCAAAAATCTGGTGACCACTGATAGCACGCTATGAAAATAGcaaca
atctttaaaaattaGTATGTGAATAAAAACCCCAAGAATTTTAAAACACC
ATACATTTCAACTCAAGACTTTCAACTTAATACTTTCAACTAAAGATTTA
AAGCAAAATGGC
Run BLAST on NCBI

transcript from alignment at sc0005712:482..1143

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044518 ID=TCONS_00044518|Name=TCONS_00044518|organism=Clytia hemisphaerica|type=transcript|length=662bp|location=Sequence derived from alignment at sc0005712:482..1143 (Clytia hemisphaerica)
GCCATTTTGCTTTAAATCTTTAGTTGAAAGTATTAAGTTGAAAGTCTTGA
GTTGAAATGTATGGTGTTTTAAAATTCTTGGGGTTTTTATTCACATACta
atttttaaagattgttgCTATTTTCATAGCGTGCTATCAGTGGTCACCAG
ATTTTTGCTGTaatttgtttagaaaaaggggtttAGTTTTAAATATGTAA
ATGATTNNNNNNNNNNNNNNTAAAAAAATGTTAGGTTTATCTTATTGGTT
GGAGTTTCTTCTTGTGTGTCACGTGCTAGTATCACAAGTTTTCATTGGTT
GATACGTTTTTTGAGGTGGTATGGTGGTGGGTGCTTGTTTCTGGACTTTG
AGTGGTGGTGGTGGGCGTgtatcttttgtttttaaatttattcgATCTCA
TTGGTTTaagttatttcaaaatatcacGTGGTAGTTTCTTTGCATTCTGG
TTGGCTAGGCTATTATTGTTTCTGTTGACTAAGAtgctattgttttattt
ttattttatttcattggtttaaaatttttttgatgtgtcatgtgattgtt
tttttagctctgattggctaaaatgttttggctttttttatatatgtaCA
TATGGAAGTAGATGTTTTTTGTACGTTATTTTAATGTCGTGTTTGGGTAT
GTTGATGTTAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028141XLOC_028141Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044518-exon-sc0005712-1491911889:482..1143TCONS_00044518-exon-sc0005712-1491911889:482..1143Clytia hemisphaericaexon
TCONS_00044518-exon-sc0005712-1510915933:482..1143TCONS_00044518-exon-sc0005712-1510915933:482..1143Clytia hemisphaericaexon
TCONS_00044518-exon-sc0005712-1575043694:482..1143TCONS_00044518-exon-sc0005712-1575043694:482..1143Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0005712supercontigsc0005712:482..1143 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.229115	0	0.173509	1.62062	1.08496	1.51034	1.68003	0.923951	0.735726	0.826796	0.614507	0.57295	0.378646	0.533654	0.250525	0.411548	0.542344	0.83253	0.174237	0.378608	0.221606	0.179594	0	1.59763	3.22692	0.59764	0.916864	0.396093	0.44282
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044518 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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