TCONS_00044768 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044768
Unique NameTCONS_00044768
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length564

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044768 ID=TCONS_00044768|Name=TCONS_00044768|organism=Clytia hemisphaerica|type=transcript|length=564bp
aaggggtacaaaaaccattaaaaagaaaatttagtcTGTGTAAGGGTCCA
AAAAATAACGATATTAAAAATTTCCTCTCCCTAAGGGTCGTGATTTTCCA
AAATGTGGACAAAAATTGagtgaaaatcgataaaaaatttgagaaaagtc
tctctaagggtcccatAAACGCCAATTTTCCctttctctaagggtcgatt
ttcgatttttgtctgggacatacccgtcacctcacAAACCTAGTAGGGtg
gacaattaaaaaaaatgtattgtTGCTGGTAGACAttacaaatgaaataa
aacgTTATCTAATGAAAATGGAAcgattcatatttcgatttagtTAATTA
AAGATTAATATTATATTCATAATGGACGTTACAAATCATATAGGCGATAT
TTGTTTCGAATCACGGAATCGGATTCGGTTACCGGGTAAAGAATCGGCGT
CAAGTAACTAATTTTAACCATTTCCCGTGTGTTATAAATGAAGTAAATAA
gtccgtaaaattatgaaatgtTATATAATATTACTAATAAAAGTACAAAA
TTGTAATTATTCAT
Run BLAST on NCBI

transcript from alignment at sc0006182:1..564

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044768 ID=TCONS_00044768|Name=TCONS_00044768|organism=Clytia hemisphaerica|type=transcript|length=564bp|location=Sequence derived from alignment at sc0006182:1..564 (Clytia hemisphaerica)
ATGAATAATTACAATTTTGTACTTTTATTAGTAATATTATATAacatttc
ataattttacggacTTATTTACTTCATTTATAACACACGGGAAATGGTTA
AAATTAGTTACTTGACGCCGATTCTTTACCCGGTAACCGAATCCGATTCC
GTGATTCGAAACAAATATCGCCTATATGATTTGTAACGTCCATTATGAAT
ATAATATTAATCTTTAATTAactaaatcgaaatatgaatcgTTCCATTTT
CATTAGATAAcgttttatttcatttgtaaTGTCTACCAGCAacaatacat
tttttttaattgtccaCCCTACTAGGTTTgtgaggtgacgggtatgtccc
agacaaaaatcgaaaatcgacccttagagaaagGGAAAATTGGCGTTTat
gggacccttagagagacttttctcaaattttttatcgattttcactCAAT
TTTTGTCCACATTTTGGAAAATCACGACCCTTAGGGAGAGGAAATTTTTA
ATATCGTTATTTTTTGGACCCTTACACAgactaaattttctttttaatgg
tttttgtacccctt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028380XLOC_028380Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044768-exon-sc0006182-1491911889:1..564TCONS_00044768-exon-sc0006182-1491911889:1..564Clytia hemisphaericaexon
TCONS_00044768-exon-sc0006182-1510915933:1..564TCONS_00044768-exon-sc0006182-1510915933:1..564Clytia hemisphaericaexon
TCONS_00044768-exon-sc0006182-1575043694:1..564TCONS_00044768-exon-sc0006182-1575043694:1..564Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0006182supercontigsc0006182:1..564 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0974546	0.113154	0	0	0	0	0	0.799122	1.17237	0	0.823598	23.6466	12.6662	5.24795	5.52263	1.62727	0.955072	35.4646	64.8155	0	0	0	0	0	0	0.137034	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044768 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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