TCONS_00045054 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045054
Unique NameTCONS_00045054
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length624

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045054 ID=TCONS_00045054|Name=TCONS_00045054|organism=Clytia hemisphaerica|type=transcript|length=624bp
AATCTCAAATATTTGCAATGAATACTTTCACAAGTTTCAAACAGCAAACA
TCTAACcacaatttcttataaaaatctcatcatatttttttttgatcAGT
TCTACCAAAATAAAGTGGAAAAtgggtcatttttttaaaacggtgaccaa
acttttttatggGATTACAAGAACAAGAATGGAGACTTTAATTGCGTTTT
CTGTTTTGGTGTTGTTCGTCTCTGGCTATGAAGaatttcgaggaGACCAA
GTTGTTCGAGTGAAGGCGAAGAGCCTGGCCCATCTCACCTTGTTAAAGAA
ATACATCGAAACAGAGAAAAATGTCGATGTTTGGGGCGAGGGCGAGGAGT
ACGAATTTCACCTTCCATCGAAGCAAATCTCATCTTTCGAGAAATGGTTG
ACAGAAAATGGAATCTCTTATGAAGTTTTGGTGTTTGATTTGGAAGACTT
ACTTAACGAAGAAGAAGTTTCGAATACCAAAAATTCTTCCACTTTCGATT
ATAACAAATACAATGATTGGTCTGAGGTACGattttatctatatattaat
agtataacgcgtatgtcattttgttttctgttttctgtctgtgtgtcact
ttcgatttcgcaagcaatgttttg
Run BLAST on NCBI

protein sequence of TCONS_00045054-protein

>TCONS_00045054-protein ID=TCONS_00045054-protein|Name=TCONS_00045054-protein|organism=Clytia hemisphaerica|type=polypeptide|length=167bp
MGHFFKTVTKLFYGITRTRMETLIAFSVLVLFVSGYEEFRGDQVVRVKAK
SLAHLTLLKKYIETEKNVDVWGEGEEYEFHLPSKQISSFEKWLTENGISY
EVLVFDLEDLLNEEEVSNTKNSSTFDYNKYNDWSEVRFYLYINSITRMSF
CFLFSVCVSLSISQAMF
Run BLAST on NCBI

transcript from alignment at sc0006790:1..1126-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045054 ID=TCONS_00045054|Name=TCONS_00045054|organism=Clytia hemisphaerica|type=transcript|length=1126bp|location=Sequence derived from alignment at sc0006790:1..1126- (Clytia hemisphaerica)
AATCTCAAATATTTGCAATGAATACTTTCACAAGTTTCAAACAGCAAACA
TCTAACCACAATTTCTTATAAAAATCTCATCATATTTTTTTTTGATCAGT
TCTACCAAAATAAAGTGGAAAATGGGTCATTTTTTTAAAACGGTGACCAA
ACTTTTTTATGGGATTACAAGAACAAGAATGGAGACTTTAATTGCGTTTT
CTGTTTTGGTGTTGTTCGTCTCTGGCTATGAAGAATTTCGAGGGTAAAAC
ATAAATTTCATGTAGTTTAGTTTGACCGGCTAAAGAAACAATCGGATATA
ATCGTTTTTGCTATTGTACCCGAGAAACCTGAAGGTTATTTTTCCCTTTT
TTAGAGACCAAGTTGTTCGAGTGAAGGCGAAGAGCCTGGCCCATCTCACC
TTGTTAAAGAAATACATCGAAACAGAGAAAAATGTAAGCATGTTTACAGA
GTGTCCCGTTTCCTCATGACTGTGGCTATTTTTTTTCAATGAGCACAGCC
CTTTCTCACAACCCCGATAGAATTTTCCACAGAGGGGATATAAAATTTTT
TAACGTAGTCCCCATGGAGATGACAATTTGATTATTACAAGCTAAAAACC
CAATTGGGATGATTTTGAAGTGCTACTTTTTCAATTTCCCAGTGGGGCTG
AAATCGTAGGGTATTTTTCCAACCGGACCGAAATTTGAGCAAATATTCCA
GTGGGTTGGGGATACCACCAGGTCTATAAAACAGAGGTGTTTGAGTTAAG
CTAGCTGTAAAAAATTCCCTATCTTTACGAATTCACTATTTCCCAAAGAT
TCCTGTATCATCATTAATTGTTAGGTCGATGTTTGGGGCGAGGGCGAGGA
GTACGAATTTCACCTTCCATCGAAGCAAATCTCATCTTTCGAGAAATGGT
TGACAGAAAATGGAATCTCTTATGAAGTTTTGGTGTTTGATTTGGAAGAC
TTACTTAACGAAGAAGAAGTTTCGAATACCAAAAATTCTTCCACTTTCGA
TTATAACAAATACAATGATTGGTCTGAGGTACGATTTTATCTATATATTA
ATAGTATAACGCGTATGTCATTTTGTTTTCTGTTTTCTGTCTGTGTGTCA
CTTTCGATTTCGCAAGCAATGTTTTG

Coding sequence (CDS) from alignment at sc0006790:1..1126-

>TCONS_00045054 ID=TCONS_00045054|Name=TCONS_00045054|organism=Clytia hemisphaerica|type=CDS|length=1503bp|location=Sequence derived from alignment at sc0006790:1..1126- (Clytia hemisphaerica)
GTCGATGTTTGGGGCGAGGGCGAGGAGTACGAATTTCACCTTCCATCGAA
GCAAATCTCATCTTTCGAGAAATGGTTGACAGAAAATGGAATCTCTTATG
AAGTTTTGGTGTTTGATTTGGAAGACTTACTTAACGAAGAAGAAGTTTCG
AATACCAAAAATTCTTCCACTTTCGATTATAACAAATACAATGATTGGTC
TGAGGTACGATTTTATCTATATATTAATAGTATAACGCGTATGTCATTTT
GTTTTCTGTTTTCTGTCTGTGTGTCACTTTCGATTTCGCAAGCAATGTTT
AGACCAAGTTGTTCGAGTGAAGGCGAAGAGCCTGGCCCATCTCACCTTGT
TAAAGAAATACATCGAAACAGAGAAAAATATGGGTCATTTTTTTAAAACG
GTGACCAAACTTTTTTATGGGATTACAAGAACAAGAATGGAGACTTTAAT
TGCGTTTTCTGTTTTGGTGTTGTTCGTCTCTGGCTATGAAGAATTTCGAG
GGTCGATGTTTGGGGCGAGGGCGAGGAGTACGAATTTCACCTTCCATCGA
AGCAAATCTCATCTTTCGAGAAATGGTTGACAGAAAATGGAATCTCTTAT
GAAGTTTTGGTGTTTGATTTGGAAGACTTACTTAACGAAGAAGAAGTTTC
GAATACCAAAAATTCTTCCACTTTCGATTATAACAAATACAATGATTGGT
CTGAGGTACGATTTTATCTATATATTAATAGTATAACGCGTATGTCATTT
TGTTTTCTGTTTTCTGTCTGTGTGTCACTTTCGATTTCGCAAGCAATGTT
TAGACCAAGTTGTTCGAGTGAAGGCGAAGAGCCTGGCCCATCTCACCTTG
TTAAAGAAATACATCGAAACAGAGAAAAATATGGGTCATTTTTTTAAAAC
GGTGACCAAACTTTTTTATGGGATTACAAGAACAAGAATGGAGACTTTAA
TTGCGTTTTCTGTTTTGGTGTTGTTCGTCTCTGGCTATGAAGAATTTCGA
GGGTCGATGTTTGGGGCGAGGGCGAGGAGTACGAATTTCACCTTCCATCG
AAGCAAATCTCATCTTTCGAGAAATGGTTGACAGAAAATGGAATCTCTTA
TGAAGTTTTGGTGTTTGATTTGGAAGACTTACTTAACGAAGAAGAAGTTT
CGAATACCAAAAATTCTTCCACTTTCGATTATAACAAATACAATGATTGG
TCTGAGGTACGATTTTATCTATATATTAATAGTATAACGCGTATGTCATT
TTGTTTTCTGTTTTCTGTCTGTGTGTCACTTTCGATTTCGCAAGCAATGT
TTAGACCAAGTTGTTCGAGTGAAGGCGAAGAGCCTGGCCCATCTCACCTT
GTTAAAGAAATACATCGAAACAGAGAAAAATATGGGTCATTTTTTTAAAA
CGGTGACCAAACTTTTTTATGGGATTACAAGAACAAGAATGGAGACTTTA
ATTGCGTTTTCTGTTTTGGTGTTGTTCGTCTCTGGCTATGAAGAATTTCG
AGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028638XLOC_028638Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045054-proteinTCONS_00045054-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045054-exon-sc0006790-1575043694:884..1126TCONS_00045054-exon-sc0006790-1575043694:884..1126Clytia hemisphaericaexon
TCONS_00045054-exon-sc0006790-1575043694:694..772TCONS_00045054-exon-sc0006790-1575043694:694..772Clytia hemisphaericaexon
TCONS_00045054-exon-sc0006790-1575043694:1..302TCONS_00045054-exon-sc0006790-1575043694:1..302Clytia hemisphaericaexon
TCONS_00045054-exon-sc0006790-1510915933:884..1126TCONS_00045054-exon-sc0006790-1510915933:884..1126Clytia hemisphaericaexon
TCONS_00045054-exon-sc0006790-1510915933:694..772TCONS_00045054-exon-sc0006790-1510915933:694..772Clytia hemisphaericaexon
TCONS_00045054-exon-sc0006790-1510915933:1..302TCONS_00045054-exon-sc0006790-1510915933:1..302Clytia hemisphaericaexon
TCONS_00045054-exon-sc0006790-1491911889:884..1126TCONS_00045054-exon-sc0006790-1491911889:884..1126Clytia hemisphaericaexon
TCONS_00045054-exon-sc0006790-1491911889:694..772TCONS_00045054-exon-sc0006790-1491911889:694..772Clytia hemisphaericaexon
TCONS_00045054-exon-sc0006790-1491911889:1..302TCONS_00045054-exon-sc0006790-1491911889:1..302Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0006790supercontigsc0006790:1..1126 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.259059	0.169361	0.0967945	0	10.8369	9.24072	2.08827	1.64633	1.80716	0.720792	0.957119	1.33897	9.93947	10.0602	1.85588	1.40655	1.48477	0.725198	13.9534	10.5525	3.18624	5.41895	1.77054	1.97388	2.12587	4.0695	0.352874	0	0.0952406	0.776042
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR003146M14A_act_pep
IPR009020Peptidase/Inhibitor_I9
Vocabulary: Biological Process
TermDefinition
GO:0006508proteolysis
Vocabulary: Molecular Function
TermDefinition
GO:0004180carboxypeptidase activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006508 proteolysis
molecular_function GO:0004180 carboxypeptidase activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045054 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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