TCONS_00053568 (transcript) - C. hemisphaerica

Overview
NameTCONS_00053568
Unique NameTCONS_00053568
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3042

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00053568 ID=TCONS_00053568|Name=TCONS_00053568|organism=Clytia hemisphaerica|type=transcript|length=3042bp
TGTCATACCACTTGAGAAGAGATAGAGGTGGTGGAATATAGATGGTCATA
TTTTACTGAGAAGAGTAAAGTTTAGACTGAGTCGTACGATTTATGATACG
AAGATGTCGATCCGAAGTATAGGAGGCAATTTACTTGGTAGCCGACGCAA
GGAAAATCACTATAATGTCACTCTAGATGATCAAAACAATCGAGCTAACG
GGCGTGACCATTTATCACAGTTTGAGAGAGTATGCTTCCAGTTGGTGCAA
GCCGTAAAGACATCACTCGAATAAAGAACAAAGCTTACACATATTCAGAG
AACTTCTCAATCATTGGATTAACTCGAGTCTTTACTGGAAACCCTGTTGA
ACGAGCCTTTTGGTTTTGCGTATTAGTTGTTGCCATATCAATAGGAGTTT
ACATGAGTAGTGAACTTATCACCAAATATATCAAAAAGGACGTGAGAGTG
GACAAGCAGACTATAATCACTGATAGTAACCACTTTCCAACTGTCACCAT
ATGTTTGAAGCCACCTCGCAAAAAGAAATATTGCAATCTAGCCATCGTTA
GCAACCCTGGTCAAGATAGTAATATGCAAGAACCATGCCCAGATGAGTAT
GATTCGACAGAAAGGAATGAAACATTGCGATCAACTGTAGAAAAGAATCA
TATTACAATCGGTGACTTTAAGATCTCATGCCAGGAACGTGGTATTTGTG
AAAGTTTCTCTGATCTGATTAATACGTATTTCAAAGTGGAAACCAGTTTC
GAGAATTGTTTGATTTGGAATTATGATGGAACATTTTTTAATGACGAGAA
CCGGTTCGATATTGATATTTCTATTCTGAACACGAAAAAAGAAGTCTTTG
ACCATCAGAAAGATGACATTCGAATCTACGTAAGTCCAAAAAGTGTTTAC
CTCCCTCTACAACACAACTATCTCACAACCNAAAAGGGATGGACTATAGA
GGAGATCTTAGAAAACATTCTCgattgatttttgtgatttttctcaACCG
TTAAGATGTCGTTTTGTAGAAATGTTTCCCCTGTCCACGTGACTCTAAAA
TTGTTGTTATATTTATCATTCAATTATAGAAAATTATCAATCTAAACTGT
GCCTATTTataaaaatacttcaatattattatattaACTTTTACAAACTA
AAACTAGATATATTGTATAATGAGATAAAAGGGCAAAACTGACTACTTGA
TAAGTACTACTTCTTTTGTCTTCGAATACGCGTATAATAATAGAGGGGTG
GACTATGTCGATTGGTCCACCCCTCCATGGATTGNTCAAAGAGGTGCATa
attgctttgaaaaaatgtggagATACTTATGACTTTTGCAAAGACTTTTT
ACCCTTTGACTTGGTTGATGAATACCACGACCCTGAAAAAAGTATTCTCG
AAATTCATCGATGTTTAGATCAAAGTTATTACCAAGAGCGAAAGGTGACA
GATTGCGAGCTTCCATGCAAGGAAACTTCCTTTGATATTTATGGATCAAG
TTATCACTTCAAAGAAGACATTAACAAAACGAACTTTAAGTTGAGCATGA
AATTCGAGAGCCCTTACGTCTACAACCTAGAGCAGGAAGAAGTGTTGTAT
AGTTGGGGAGATTTCCTTGGAGGTTTAGGGGGAAACATTGGTCTATTTTG
TGGGTTCTCTTTACTTTTTCTGATTGAGATAGCTGCTTTTGTTGTATTGA
GATGTTGGGCTAAAGTTGCCAAGAAACATTTGGTGCGAAGAGAACGTATA
ATTAAACGACAAAGTCGAAGTGAGTTTCCAAATGATGATGTGGAGTTAAA
NTCCCATATTCATCAAAATTCCATCGAACTTcacgaaagaaaaaaataac
gaaagagTAGAAGCTAAAACTAAAAACagttaaaacattaaaaactaaga
atattttaaagtaAGTATAAAActtcaaatacaaaataatttAGAAAGTT
ATTCAAAAATCCATCCACATTAAGTATATTCGTTAATTGGCAAAATGAAT
AAATTTAAGTATTGTAATTCNGCCAAGAAACATTTGGTGCGAAGAGAACG
TATAATTAAACGACAAAGTCGAAGTGAGTTTCCAAATGATGATGTGGAGT
TAAAAGAAGTAGCAATGGGTGAGAGTGAAGAATTTGCTGATGACCAACAT
TCTAGTGATGTCAGTGATGAAGAGACGGATCCAACGCTTCAATATGATAA
AAATCATGATGAAATTACGGGCGAAAGACTTTATTACTCACAGACATTGA
TATAGAAGAAGTATCATTTATTGCGGCAATTCAGAATATCCTGATAGGTT
GGGGTCCGGAAGAGGGGTGCgaataatatttttttccaatgaaaaaaaaa
aacagaaagaagTAAGAATTAAAAGTAGAAGAATAATCTACTCGAAAAAA
AGAAAGGACAAACGGATGATTATGGTTGAGGAAAAGTAGGAAACTTACTc
ggggaaaaaagaaaaatttcttaggaaagttTTCCTATAAGCAAAGTATT
ACCTGACTATTAAGTTTTCTCCTTTAAGTTTTGAAACAAATAACGGATGG
AATTTTTTTACTCtacatattttaaacaaaaccaATGTAaatagaattta
atggaaaacaAGAGAAAATGTTTAATGCAACGAAACAACACTGCTACAAA
TTCGACTCGATTATCTGTATCTAACACATAAAAGGGATGGACTATAGAGG
AGATCTTAGAAAACATTCTCgattgatttttgtgatttttctcaACCGTT
AAGATGTCGTTTTGTAGAAATGTTTCCCCTGTCCACGTGACTCTAAAATT
GTTGTTATATTTATCATTCAATTATAGAAAATTATCAATCTAAACTGTGC
CTATTTataaaaatacttcaatattattatattaACTTTTACAAACTAAA
ACTAGATATATTGTATAATGAGATAAAAGGGCAAAACTGACTACTTGATA
AGTACTACTTCTTTTGTCTTCGAATACGCGTATAATAATAGAGGGGTGGA
CTATGTCGATTGGTCCACCCCTCCATGGATTGAACTCAATTT
Run BLAST on NCBI

transcript from alignment at scaffold_233:626883..630136+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00053568 ID=TCONS_00053568|Name=TCONS_00053568|organism=Clytia hemisphaerica|type=transcript|length=3254bp|location=Sequence derived from alignment at scaffold_233:626883..630136+ (Clytia hemisphaerica)
TGTCATACCACTTGAGAAGAGATAGAGGTGGTGGAATATAGATGGTCATA
TTTTACTGAGAAGAGTAAAGTTTAGACTGAGTCGTACGATTTATGATACG
AAGATGTCGATCCGAAGTATAGGAGGCAATTTACTTGGTAGCCGACGCAA
GGAAAATCACTATAATGTCACTCTAGATGATCAAAACAATCGAGCTAACG
GGCGTGACCATTTATCACAGTTTGAGAGAGGTTAGATCATTCTCACTATT
GAGAAATACATTATTTCTTTCATTCATTCTAATTctaataaatattttga
ctgAAGACCACACCTTTCAGTAGCAATTCAATATTTCAGTTTCAAATTCG
GTACATTTCACAACTATTNTTCAGTAGCAATTCAATATTTCAGTTGCAAA
TTCGGTACATTTCACAACTATTTAATCTTTTATTCCAGGCAGTATGCTTC
CAGTTGGTGCAAGCCGTAAAGACATCACTCGAATAAAGAACAAAGCTTAC
ACATATTCAGAGAACTTCTCAATCATTGGATTAACTCGAGTCTTTACTGG
AAACCCTGTTGAACGAGCCTTTTGGTTTTGCGTATTAGTTGTTGCCATAT
CAATAGGAGTTTACATGAGTAGTGAACTTATCACCAAATATATCAAAAAG
GACGTGAGAGTGGACAAGCAGACTATAATCACTGATAGTAACCACTTTCC
AACTGTCACCATATGTTTGAAGCCACCTCGCAAAAAGAAATATTGCAATC
TAGCCATCGTTAGCAACCCTGGTCAAGATAGTAATATGCAAGAACCATGC
CCAGATGAGTATGATTCGACAGAAAGGAATGAAACATTGCGATCAACTGT
AGAAAAGAATCATATTACAATCGGTGACTTTAAGATCTCATGCCAGGAAC
GTGGTATTTGTGAAAGTTTCTCTGATCTGATTAATACGTATTTCAAAGTG
GAAACCAGTTTCGAGAATTGTTTGATTTGGAATTATGATGGAACATTTTT
TAATGACGAGAACCGGTTCGATATTGATATTTCTATTCTGAACACGAAAA
AAGAAGTCTTTGACCATCAGAAAGATGACATTCGAATCTACGTAAGTCCA
AAAAGTGTTTACCTCCCTCTACAACACAACTATCTCACAACCNAAAAGGG
ATGGACTATAGAGGAGATCTTAGAAAACATTCTCgattgatttttgtgat
ttttctcaACCGTTAAGATGTCGTTTTGTAGAAATGTTTCCCCTGTCCAC
GTGACTCTAAAATTGTTGTTATATTTATCATTCAATTATAGAAAATTATC
AATCTAAACTGTGCCTATTTataaaaatacttcaatattattatattaAC
TTTTACAAACTAAAACTAGATATATTGTATAATGAGATAAAAGGGCAAAA
CTGACTACTTGATAAGTACTACTTCTTTTGTCTTCGAATACGCGTATAAT
AATAGAGGGGTGGACTATGTCGATTGGTCCACCCCTCCATGGATTGNTCA
AAGAGGTGCATaattgctttgaaaaaatgtggagATACTTATGACTTTTG
CAAAGACTTTTTACCCTTTGACTTGGTTGATGAATACCACGACCCTGAAA
AAAGTATTCTCGAAATTCATCGATGTTTAGATCAAAGTTATTACCAAGAG
CGAAAGGTGACAGATTGCGAGCTTCCATGCAAGGAAACTTCCTTTGATAT
TTATGGATCAAGTTATCACTTCAAAGAAGACATTAACAAAACGAACTTTA
AGTTGAGCATGAAATTCGAGAGCCCTTACGTCTACAACCTAGAGCAGGAA
GAAGTGTTGTATAGTTGGGGAGATTTCCTTGGAGGTTTAGGGGGAAACAT
TGGTCTATTTTGTGGGTTCTCTTTACTTTTTCTGATTGAGATAGCTGCTT
TTGTTGTATTGAGATGTTGGGCTAAAGTTGCCAAGAAACATTTGGTGCGA
AGAGAACGTATAATTAAACGACAAAGTCGAAGTGAGTTTCCAAATGATGA
TGTGGAGTTAAANTCCCATATTCATCAAAATTCCATCGAACTTcacgaaa
gaaaaaaataacgaaagagTAGAAGCTAAAACTAAAAACagttaaaacat
taaaaactaagaatattttaaagtaAGTATAAAActtcaaatacaaaata
atttAGAAAGTTATTCAAAAATCCATCCACATTAAGTATATTCGTTAATT
GGCAAAATGAATAAATTTAAGTATTGTAATTCNGCCAAGAAACATTTGGT
GCGAAGAGAACGTATAATTAAACGACAAAGTCGAAGTGAGTTTCCAAATG
ATGATGTGGAGTTAAAAGAAGTAGCAATGGGTGAGAGTGAAGAATTTGCT
GATGACCAACATTCTAGTGATGTCAGTGATGAAGAGACGGATCCAACGCT
TCAATATGATAAAAATCATGATGAAATTACGGGCGAAAGACTTTATTACT
CACAGACATTGATATAGAAGAAGTATCATTTATTGCGGCAATTCAGAATA
TCCTGATAGGTTGGGGTCCGGAAGAGGGGTGCgaataatatttttttcca
atgaaaaaaaaaaacagaaagaagTAAGAATTAAAAGTAGAAGAATAATC
TACTCGAAAAAAAGAAAGGACAAACGGATGATTATGGTTGAGGAAAAGTA
GGAAACTTACTcggggaaaaaagaaaaatttcttaggaaagttTTCCTAT
AAGCAAAGTATTACCTGACTATTAAGTTTTCTCCTTTAAGTTTTGAAACA
AATAACGGATGGAATTTTTTTACTCtacatattttaaacaaaaccaATGT
AaatagaatttaatggaaaacaAGAGAAAATGTTTAATGCAACGAAACAA
CACTGCTACAAATTCGACTCGATTATCTGTATCTAACACATAAAAGGGAT
GGACTATAGAGGAGATCTTAGAAAACATTCTCgattgatttttgtgattt
ttctcaACCGTTAAGATGTCGTTTTGTAGAAATGTTTCCCCTGTCCACGT
GACTCTAAAATTGTTGTTATATTTATCATTCAATTATAGAAAATTATCAA
TCTAAACTGTGCCTATTTataaaaatacttcaatattattatattaACTT
TTACAAACTAAAACTAGATATATTGTATAATGAGATAAAAGGGCAAAACT
GACTACTTGATAAGTACTACTTCTTTTGTCTTCGAATACGCGTATAATAA
TAGAGGGGTGGACTATGTCGATTGGTCCACCCCTCCATGGATTGAACTCA
ATTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033807XLOC_033807Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053568-exon-scaffold_233-1491911889:626883..627112TCONS_00053568-exon-scaffold_233-1491911889:626883..627112Clytia hemisphaericaexon
TCONS_00053568-exon-scaffold_233-1510915933:626883..627112TCONS_00053568-exon-scaffold_233-1510915933:626883..627112Clytia hemisphaericaexon
TCONS_00053568-exon-scaffold_233-1575043694:626883..627112TCONS_00053568-exon-scaffold_233-1575043694:626883..627112Clytia hemisphaericaexon
TCONS_00053568-exon-scaffold_233-1491911889:627325..630136TCONS_00053568-exon-scaffold_233-1491911889:627325..630136Clytia hemisphaericaexon
TCONS_00053568-exon-scaffold_233-1510915933:627325..630136TCONS_00053568-exon-scaffold_233-1510915933:627325..630136Clytia hemisphaericaexon
TCONS_00053568-exon-scaffold_233-1575043694:627325..630136TCONS_00053568-exon-scaffold_233-1575043694:627325..630136Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_233supercontigscaffold_233:626883..630136 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.021418	1.03426	0.520641	4.93414	3.19269	2.24796	1.19268	0.405559	1.2707	0.108441	0.499627	0.0483312	0	0	0	0.223078	0.264948	0	0	0	0.148727	3.21831e-09	0.499669	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00053568 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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