TCONS_00051812 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051812
Unique NameTCONS_00051812
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1507

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051812 ID=TCONS_00051812|Name=TCONS_00051812|organism=Clytia hemisphaerica|type=transcript|length=1507bp
GCGGATCACAGCAGAACATGCATCCGAAATTACAAAGGAGACAAATTTGG
TCATTGTGGAACAGACAAAAATGGAAAGTTTATACCATGTGAAACTAAGA
ATGAATTTTGTGGAAAGGTTCAGTGTCACGGAGATATCGCAagtcatttc
attgtttttggaAGAAGTCGATCAACTGCTGTCTATGGAAGTCAATGCAG
ATCGGGATTAACGTATGTTGGGGAGAATATAAATCCAACCATGGCATTTG
ATGGAACCAAATGTGATGCAGGAAAGGTTTGTCAAAATCAGCAATGTATC
GCAACTGATATCGCAAAATCAACTTCGAAGTGTGACGATCGTTGTCATTT
TGGGAGATGTACAAACGTGGGAGCTTGTTATTGTCCACCGAAATTCAAAT
GTCCGGATTGTTCTCGCATGGACCCAAACAATATTAACGGACAGGTGTGC
AGTGAACAACCTTCTCAAACTCATAGACATCATGATGGAAAACTCAACTG
GGAAgTTGCACCACTTTGCTTGGATGCGGTCGGGATGATCAATATCGGAT
GTCGTTCGAAAAGTGGTGGCACAATGATCGCTAACTATCGTAATGCTATG
GATTGGAATAATCCATCTGACTCAATAGAAAAAATGATTTGTGATTGTGC
AAAGACTGCAAAAGACGATGGTTATGTTGGCTTTGGTTTGGTTTACTGGG
GAGAATGTTGGGGCTATTCAACCAAAGATGAAGCTGTTAACCAATCAGGA
TCGACCAATTGTTCGAATGATCAATATAACTCTTGTGCAGAAGAAGATCG
CATTTGTATAGGCAAAGCTGATGCCTCGTACGCTTTTTTACTCTGAAGTG
ATTATTATGATTATATGATTTAGCGGAAGACTGCGAGGGAGTTGGTTGCT
AAGTTTTGCGGACCGACAAGTCTACCAACAGAATAGGATCTAACTAACTC
GCAAGTTATCTGTCTCTATAACTCGACGAACAAATCTGCATTCACAATGC
ATGATCGAGTTATAGGGGGTTAACATAGAGACCCCAATGTAATTAACAAT
ACTTTATTGTTATTACTGGATCTCAGAAAAGAGCTTATTTGTGGTAGATT
TTTAACCCTTAAACTTTATAATAAATTGTAAATATATTATTTAGAATCTG
AGAATTATAATATGAAAGGAATAAgtttatatattataatatatttttgt
gAGACAAATTTACATGAGCAGGGCCCTTATAATGAACTGGGATGTGGAGG
TGCCTAAAATATAGTGAATAAGGTGTCAACTTCGATTTCGACCCCCTAGT
ATGCCTGAAAATGGCcctatttcaaattttggaatgAAATTAAGTTTTGT
AAATTATTAATCGTTAtcttaaaaacaactttttatttgagaaaaatgag
gAGGCTATAAACCTATAACCCCGATGGCATGGGCCCTGATGGGTATACTT
CAATTAAAGaagttttatttctaaaaatgaaaaatatatatgaaaaataa
atgaaaa
Run BLAST on NCBI

transcript from alignment at scaffold_205:216194..219667+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051812 ID=TCONS_00051812|Name=TCONS_00051812|organism=Clytia hemisphaerica|type=transcript|length=3474bp|location=Sequence derived from alignment at scaffold_205:216194..219667+ (Clytia hemisphaerica)
GCGGATCACAGCAGAACATGCATCCGAAATTACAAAGGAGACAAATTTGG
TCATTGTGGAACAGACAAAAATGGAAAGTTTATACCATGTGAAACTAAGT
AAGAACTTCTGAACTTGTTTTTGACTCAGGTCCATAAGGGCCCATAAGTA
GAAATAAAAGATTGGCGCAGTAGAATTAACACCTCTTAATCAAGTTAAGA
TTTAGGGTGGAATAGTTTACATTGTGTAATTATGCAACGAAACTTCACAG
ATACCAATTACTCGTGGGAAGTTCATATATCAAACTGAATTTTCTTTCAG
GAATGAATTTTGTGGAAAGGTTCAGTGTCACGGAGATATCGCAagtcatt
tcattgtttttggaAGAAGTCGATCAACTGCTGTCTATGGAAGTCAATGC
AGGTAAAAAGAATTGTAGTCATTTATAGCCATTGGACATTACTTTGAATC
AGAAATCAATATTGAGATTTTACACTAAAGCAATGCACCCTTTGACGCCC
TGTTGGATGATTGTGATCGCGATATTATTGCCCCATAATCGTCTTCAAat
ttcttcagatttttttccttttgtcATTTCTAGATCGGGATTAACGTATG
TTGGGGAGAATATAAATCCAACCATGGCATTTGATGGAACCAAATGTGAT
GCAGGAAAGGTAAGAGGATTTCAGTTCTTTGTTAATTTATTAgttgatat
ttttctaaaatctagTTAATCATATTCACAAAaccccttcttcattttcg
agaccaatttataatttttgtgatttttctttaCTGCACCTTGAAAAACT
CTCAATCTTGTTCATTCATACAGGTTTGTCAAAATCAGCAATGTATCGCA
ACTGATATCGCAAAATCAACTTCGAAGTGTGACGATCGTTGTCATTTTGG
GGTAAGTCTGCAATAGCTTACATCTCTCGAGAGATACAACATATCAAATT
TAAGATTTCTCTCTTGACGGACCAAAGTCCACTAGAATATGCAAGAATAA
TAGCACTTGGTTTAGAATCTTAAAGTGAAAACCCATCAATTAAAATAGTT
CCAATGTTTCTATCCCATAGAGATGTACAAACGTGGGAGCTTGTTATTGT
CCACCGAAATTCAAATGTCCGGATTGTTCTCGCATGGACCCAAACAATAT
TAACGGACAGGTGTGCAGTGAACAACCTTCTCAAACTCATGTAAGTTAAA
ACACTAAATTAAATTATTATAACACCTTCAATATCAGATTGAGAGCACTC
CATCAATGTCATGATAGGTTTTGCGACTTTACTCCTCCGTGCTAAAATGT
ATTTAAATTACAAAGCCTCATTTGCATGCATCtattttatcttcattttc
tctCGTTTATTATAGAGACATCATGATGGAAAACTCAACTGGGAAggtaa
tttcatcaaaatattacTTACTTATTTACTTCCTTACTTTCTAGACATAC
TATACTTAACAAATAGTGAGCATCGATAGCCTTCAACAAGCTATTTCATA
ATCTTATCGATAATTCGTGGACCTGCAGAGAATCATAACTCTAAAAAGAT
TCCTGAAAATTGACCTTCGACTGACATATGATTTGTTATGTCCCTGAAAT
TGCCTCTACGACATTGACCATGACAATAAAACAGATAGAAGACAGACAGA
AACGAAATGACAGCACACTCCATCACACTCTCACATATTTTACTTTAACC
ATTAACAGAATACTTGGACCTCTTAACAAGCAACTTGTTCTTGACTCGAT
GGAAAGCACGTGTTACATTCAAAAATCGTGTGTCGACAGGTGATACGCTC
GATAAATACGTCCCAACAAAGAAAATCGACAGTGTAGACCATGCCATAGA
CAATTTGTTCAAAGATTTAAAAGACATGAACTTAGCACCGACAACAACGA
CGACTACAACAACTACAACGACAACGACAACACCTACAACGACACCAACA
ACGACACCAACAACGACACCAACAACGACACCAACAACGACTACGACAGG
TGTGTGAAGACTATATTATATTAATACCAGCcttaactgttcttattttt
ccgtGATATTCAGGCTTTAAATGTTCTCAAAATGGTCTTTATAAAGAGTT
TAAAAGGTAGCATTTTGGCACCTTTTCTTCTCCTCCCACTTAACGAACGG
AACGAAGGAAATACAATGTCTGTCAGGGTATCAAAAAGATCCATAAAATA
ATTTGGTATTTTTCTCACTATTTTCTTTTCTAGTTGCACCACTTTGCTTG
GATGCGGTCGGGATGATCAATATCGGATGTCGTTCGAAAAGTGGTGGCAC
AATGATCGCTAACTATCGTAATGCTATGGATTGGAATAATCCATCTGACT
CAATAGAAAAgtaagttttacttttttatcaacCCTTGATATCAGAACTT
TAAAGTTATTTGTGGCAACGGCATTAAATTGAGCAAAAAATAGGCCAGCC
CTTTGCATATTTCTTCAAATACCTTATTATAATCTGCCACTTTACCAAGT
AGACAATTTCTTTTGTCTAACTTTTTGATTGGTATGCTAAAGTAATTAAA
TTaaactaaaactaaaacttaaactaaaatttaaaatctccATTTCCAGA
ATGATTTGTGATTGTGCAAAGACTGCAAAAGACGATGGTTATGTTGGCTT
TGGTTTGGTTTACTGGGGAGAATGTTGGGGCTATTCAACCAAAGATGAAG
CTGTTAACCAATCAGGATCGACCAATTGTTCGAATGATCAATATAACTCT
TGTGCAGAAGAAGATCGCATTTGTATAGGCAAAGCTGATGCCTCGTACGC
TTTTTTACTCTGAAGTGATTATTATGATTATATGATTTAGCGGAAGACTG
CGAGGGAGTTGGTTGCTAAGTTTTGCGGACCGACAAGTCTACCAACAGAA
TAGGATCTAACTAACTCGCAAGTTATCTGTCTCTATAACTCGACGAACAA
ATCTGCATTCACAATGCATGATCGAGTTATAGGGGGTTAACATAGAGACC
CCAATGTAATTAACAATACTTTATTGTTATTACTGGATCTCAGAAAAGAG
CTTATTTGTGGTAGATTTTTAACCCTTAAACTTTATAATAAATTGTAAAT
ATATTATTTAGAATCTGAGAATTATAATATGAAAGGAATAAgtttatata
ttataatatatttttgtgAGACAAATTTACATGAGCAGGGCCCTTATAAT
GAACTGGGATGTGGAGGTGCCTAAAATATAGTGAATAAGGTGTCAACTTC
GATTTCGACCCCCTAGTATGCCTGAAAATGGCcctatttcaaattttgga
atgAAATTAAGTTTTGTAAATTATTAATCGTTAtcttaaaaacaactttt
tatttgagaaaaatgaggAGGCTATAAACCTATAACCCCGATGGCATGGG
CCCTGATGGGTATACTTCAATTAAAGaagttttatttctaaaaatgaaaa
atatatatgaaaaataaatgaaaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032802XLOC_032802Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051812-exon-scaffold_205-1491911889:216194..216291TCONS_00051812-exon-scaffold_205-1491911889:216194..216291Clytia hemisphaericaexon
TCONS_00051812-exon-scaffold_205-1510915933:216194..216291TCONS_00051812-exon-scaffold_205-1510915933:216194..216291Clytia hemisphaericaexon
TCONS_00051812-exon-scaffold_205-1575043694:216194..216291TCONS_00051812-exon-scaffold_205-1575043694:216194..216291Clytia hemisphaericaexon
TCONS_00051812-exon-scaffold_205-1491911889:216494..216595TCONS_00051812-exon-scaffold_205-1491911889:216494..216595Clytia hemisphaericaexon
TCONS_00051812-exon-scaffold_205-1510915933:216494..216595TCONS_00051812-exon-scaffold_205-1510915933:216494..216595Clytia hemisphaericaexon
TCONS_00051812-exon-scaffold_205-1575043694:216494..216595TCONS_00051812-exon-scaffold_205-1575043694:216494..216595Clytia hemisphaericaexon
TCONS_00051812-exon-scaffold_205-1491911889:216777..216852TCONS_00051812-exon-scaffold_205-1491911889:216777..216852Clytia hemisphaericaexon
TCONS_00051812-exon-scaffold_205-1510915933:216777..216852TCONS_00051812-exon-scaffold_205-1510915933:216777..216852Clytia hemisphaericaexon
TCONS_00051812-exon-scaffold_205-1575043694:216777..216852TCONS_00051812-exon-scaffold_205-1575043694:216777..216852Clytia hemisphaericaexon
TCONS_00051812-exon-scaffold_205-1491911889:217017..217094TCONS_00051812-exon-scaffold_205-1491911889:217017..217094Clytia hemisphaericaexon
TCONS_00051812-exon-scaffold_205-1510915933:217017..217094TCONS_00051812-exon-scaffold_205-1510915933:217017..217094Clytia hemisphaericaexon
TCONS_00051812-exon-scaffold_205-1575043694:217017..217094TCONS_00051812-exon-scaffold_205-1575043694:217017..217094Clytia hemisphaericaexon
TCONS_00051812-exon-scaffold_205-1491911889:217264..217383TCONS_00051812-exon-scaffold_205-1491911889:217264..217383Clytia hemisphaericaexon
TCONS_00051812-exon-scaffold_205-1510915933:217264..217383TCONS_00051812-exon-scaffold_205-1510915933:217264..217383Clytia hemisphaericaexon
TCONS_00051812-exon-scaffold_205-1575043694:217264..217383TCONS_00051812-exon-scaffold_205-1575043694:217264..217383Clytia hemisphaericaexon
TCONS_00051812-exon-scaffold_205-1491911889:217559..217589TCONS_00051812-exon-scaffold_205-1491911889:217559..217589Clytia hemisphaericaexon
TCONS_00051812-exon-scaffold_205-1510915933:217559..217589TCONS_00051812-exon-scaffold_205-1510915933:217559..217589Clytia hemisphaericaexon
TCONS_00051812-exon-scaffold_205-1575043694:217559..217589TCONS_00051812-exon-scaffold_205-1575043694:217559..217589Clytia hemisphaericaexon
TCONS_00051812-exon-scaffold_205-1491911889:218427..218553TCONS_00051812-exon-scaffold_205-1491911889:218427..218553Clytia hemisphaericaexon
TCONS_00051812-exon-scaffold_205-1510915933:218427..218553TCONS_00051812-exon-scaffold_205-1510915933:218427..218553Clytia hemisphaericaexon
TCONS_00051812-exon-scaffold_205-1575043694:218427..218553TCONS_00051812-exon-scaffold_205-1575043694:218427..218553Clytia hemisphaericaexon
TCONS_00051812-exon-scaffold_205-1491911889:218793..219667TCONS_00051812-exon-scaffold_205-1491911889:218793..219667Clytia hemisphaericaexon
TCONS_00051812-exon-scaffold_205-1510915933:218793..219667TCONS_00051812-exon-scaffold_205-1510915933:218793..219667Clytia hemisphaericaexon
TCONS_00051812-exon-scaffold_205-1575043694:218793..219667TCONS_00051812-exon-scaffold_205-1575043694:218793..219667Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_205supercontigscaffold_205:216194..219667 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0273326	0.0266536	0.0485005	0	0	0	0	0	0	0	0	0	1.23673	0.34134	1.61623	1.63909	0.108156	0.116055	2.01859	1.13735	0.292658	0.219076	0.548976	0.371265	0.411965	0.511902	0	0.0316558	0.425005	0.837614
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00051812 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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