TCONS_00053186 (transcript) - C. hemisphaerica

Overview
NameTCONS_00053186
Unique NameTCONS_00053186
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2132

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00053186 ID=TCONS_00053186|Name=TCONS_00053186|organism=Clytia hemisphaerica|type=transcript|length=2132bp
TCAAAATTCCATGGAAGTCTGAAGGCAAATCGAAATActattttgattct
ttttggTAACAACCAAGACCTTCCTGATGTACACGGGTGCTGAATCTTCT
TGAAATGGATCCATTGTTCAACAAAACTTCATTCTCATACGCTGGTAATT
ATACAATGCAGTCAAATCCAAACATGACATTAAACAGTACAAACGAAACA
TTTGACTATCACAATATCTCCTTAATCTTTTCTATCAACAATCACCAAAA
CATTTCCAATACTACTCAACCAGAAGTTACATCAATCCCACAATCTATTA
TTACCATTATCTTTGTCTTCAATGGTATCTTATCATTACTGGGAATCATC
GGTAACCTCTTTGTCTGTTTCATCATTGTCAGAGGTCGTAAAATGTACAC
CATTGCTAATCTGTTTTTAATGAACTTAGCGATCGCTGACATGTGCGTTC
TAGTAATCAGTTATCCTTTATGGGTTTTACAGTCTTTAGAACCGAACTCA
TGGCCTTTCGGGTCTGTACTTTGTAAAATTATCCCAACAATTTCGGATGC
TTTTTATGGGGTATCGCTTGGTTGTATGACTACCATTTCTATCCATCGGT
ACCGTATGATTTTACACGCGATGGGAAAACAGCTAACTTTTCCTCAATCA
AAAATGATCATCACGGGTATATGGTTTATATCCTTATTGACTATCTCTGT
ACCCTTGTACCCAGTACTCCGTTACCAGGAATTTTCTCCACAAGGCGTGG
TCAGGTGTCAATCAAGATGGCCCTCCAAAACTTATGAGCAGTGCTACCAA
ttatttttactgattttttggTATATCTGCCCATTGTTAATCATACTATT
CACGTTCATTCGGATCAAGTTATATCTTGAAAAACAAATGACTTATGAAT
GGCTTCAAGGCTCCGAACACACTTTATTGATTGCTAATCATATCATGGGA
ATCAAGAAAGCATTGCGCATGCTCGCTCCTGTTGTTATTGTTTTCGCTAT
TCTCATGCTACCCTGGAATATCATTCGGCTGGTCAGTATTTTTACTGAAG
TACATTTGGTGGATAATGTTCATATTTATATCATGGTTTCTGGTACAATG
CTGGTCGCGAACAGTGTTTCCAACCCGTTTACTTACTATATCATGTCAAA
AGAATTTCGAATCGAATTCCAAAAACAATTCTGGCTTTTAAAAGTCAAAC
TTGGTATTGAATCGAATGAACATCAGAAATTCACTTTAGAATCTGATAAA
TACGGCCGAACTGTTGTCAGACGTACGGCATCGTTTCTTGATACGACAAG
TGTTGCTGATTCCAAAAATGGAAACTTCAAGCGGCCCCGAACAGCCACTC
AGAGTAGCGACGTCTTAACGCCGAATATCAGTCATCGCAGTCCGCCCTCC
TCAATAATGAATACTTATGAGCCAGTTAACGAGATTATCAGAAACGCCCC
TCAAAAGAATTCTACGGGTGGAAACGGGGCGTATGATTTATTGAGATTTA
CACCGCCCACGCTGACGCCTTTGAACAATAACACAACACTTATTGCAGAA
TTGTACAGTATTGAGGAAGAGAATAGCACTGACCTCGATTCCCCAGAATG
TTTTGTAAAGAACGTCACTAAGCTGAATGGGATAACAGAGACCAAATTTC
ATGCAATAATTGACAGTGACGATCTCAAAGAAACAAGACTCTAGATTTTT
AGTATGACTATCTATCCTTTccgttactttaatgggataaattttcgtgg
AGATTAAGTTTCGCGGATGGTACTATTAGGAGAAGATATCTTTCACGATT
TTTTGCCTTTTACTGCCAAATCATGCATTTTGATTGTTGAAATATTCATT
ATTAGCGCTTATGATGCCAGTCGCGGACAAAGCCTTTCCTAATTTTGTGG
GTGACACACAAATCtgcgaaatttttttcccattTAAATATTAGAAGGGA
ATTAGTTCCCGAAAAAGTCTCAAGGATTTTCTATTCGGAGATATTAGTGA
GGTTAATCGCTGTTAGATTTCTCTCGACAACTAATAGGGCTCGTGCCATG
GCTCAAGTGAAGGCACTGCAGGGAAGATTACCATTTCAGTTACCCATTGA
TACTTTGTTACAATAATCTAGTGTAGTGGTTT
Run BLAST on NCBI

protein sequence of TCONS_00053186-protein

>TCONS_00053186-protein ID=TCONS_00053186-protein|Name=TCONS_00053186-protein|organism=Clytia hemisphaerica|type=polypeptide|length=529bp
MDPLFNKTSFSYAGNYTMQSNPNMTLNSTNETFDYHNISLIFSINNHQNI
SNTTQPEVTSIPQSIITIIFVFNGILSLLGIIGNLFVCFIIVRGRKMYTI
ANLFLMNLAIADMCVLVISYPLWVLQSLEPNSWPFGSVLCKIIPTISDAF
YGVSLGCMTTISIHRYRMILHAMGKQLTFPQSKMIITGIWFISLLTISVP
LYPVLRYQEFSPQGVVRCQSRWPSKTYEQCYQLFLLIFWYICPLLIILFT
FIRIKLYLEKQMTYEWLQGSEHTLLIANHIMGIKKALRMLAPVVIVFAIL
MLPWNIIRLVSIFTEVHLVDNVHIYIMVSGTMLVANSVSNPFTYYIMSKE
FRIEFQKQFWLLKVKLGIESNEHQKFTLESDKYGRTVVRRTASFLDTTSV
ADSKNGNFKRPRTATQSSDVLTPNISHRSPPSSIMNTYEPVNEIIRNAPQ
KNSTGGNGAYDLLRFTPPTLTPLNNNTTLIAELYSIEEENSTDLDSPECF
VKNVTKLNGITETKFHAIIDSDDLKETRL
Run BLAST on NCBI

transcript from alignment at scaffold_226:135119..137250

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00053186 ID=TCONS_00053186|Name=TCONS_00053186|organism=Clytia hemisphaerica|type=transcript|length=2132bp|location=Sequence derived from alignment at scaffold_226:135119..137250 (Clytia hemisphaerica)
AAACCACTACACTAGATTATTGTAACAAAGTATCAATGGGTAACTGAAAT
GGTAATCTTCCCTGCAGTGCCTTCACTTGAGCCATGGCACGAGCCCTATT
AGTTGTCGAGAGAAATCTAACAGCGATTAACCTCACTAATATCTCCGAAT
AGAAAATCCTTGAGACTTTTTCGGGAACTAATTCCCTTCTAATATTTAaa
tgggaaaaaaatttcgcaGATTTGTGTGTCACCCACAAAATTAGGAAAGG
CTTTGTCCGCGACTGGCATCATAAGCGCTAATAATGAATATTTCAACAAT
CAAAATGCATGATTTGGCAGTAAAAGGCAAAAAATCGTGAAAGATATCTT
CTCCTAATAGTACCATCCGCGAAACTTAATCTccacgaaaatttatccca
ttaaagtaacggAAAGGATAGATAGTCATACTAAAAATCTAGAGTCTTGT
TTCTTTGAGATCGTCACTGTCAATTATTGCATGAAATTTGGTCTCTGTTA
TCCCATTCAGCTTAGTGACGTTCTTTACAAAACATTCTGGGGAATCGAGG
TCAGTGCTATTCTCTTCCTCAATACTGTACAATTCTGCAATAAGTGTTGT
GTTATTGTTCAAAGGCGTCAGCGTGGGCGGTGTAAATCTCAATAAATCAT
ACGCCCCGTTTCCACCCGTAGAATTCTTTTGAGGGGCGTTTCTGATAATC
TCGTTAACTGGCTCATAAGTATTCATTATTGAGGAGGGCGGACTGCGATG
ACTGATATTCGGCGTTAAGACGTCGCTACTCTGAGTGGCTGTTCGGGGCC
GCTTGAAGTTTCCATTTTTGGAATCAGCAACACTTGTCGTATCAAGAAAC
GATGCCGTACGTCTGACAACAGTTCGGCCGTATTTATCAGATTCTAAAGT
GAATTTCTGATGTTCATTCGATTCAATACCAAGTTTGACTTTTAAAAGCC
AGAATTGTTTTTGGAATTCGATTCGAAATTCTTTTGACATGATATAGTAA
GTAAACGGGTTGGAAACACTGTTCGCGACCAGCATTGTACCAGAAACCAT
GATATAAATATGAACATTATCCACCAAATGTACTTCAGTAAAAATACTGA
CCAGCCGAATGATATTCCAGGGTAGCATGAGAATAGCGAAAACAATAACA
ACAGGAGCGAGCATGCGCAATGCTTTCTTGATTCCCATGATATGATTAGC
AATCAATAAAGTGTGTTCGGAGCCTTGAAGCCATTCATAAGTCATTTGTT
TTTCAAGATATAACTTGATCCGAATGAACGTGAATAGTATGATTAACAAT
GGGCAGATATAccaaaaaatcagtaaaaataaTTGGTAGCACTGCTCATA
AGTTTTGGAGGGCCATCTTGATTGACACCTGACCACGCCTTGTGGAGAAA
ATTCCTGGTAACGGAGTACTGGGTACAAGGGTACAGAGATAGTCAATAAG
GATATAAACCATATACCCGTGATGATCATTTTTGATTGAGGAAAAGTTAG
CTGTTTTCCCATCGCGTGTAAAATCATACGGTACCGATGGATAGAAATGG
TAGTCATACAACCAAGCGATACCCCATAAAAAGCATCCGAAATTGTTGGG
ATAATTTTACAAAGTACAGACCCGAAAGGCCATGAGTTCGGTTCTAAAGA
CTGTAAAACCCATAAAGGATAACTGATTACTAGAACGCACATGTCAGCGA
TCGCTAAGTTCATTAAAAACAGATTAGCAATGGTGTACATTTTACGACCT
CTGACAATGATGAAACAGACAAAGAGGTTACCGATGATTCCCAGTAATGA
TAAGATACCATTGAAGACAAAGATAATGGTAATAATAGATTGTGGGATTG
ATGTAACTTCTGGTTGAGTAGTATTGGAAATGTTTTGGTGATTGTTGATA
GAAAAGATTAAGGAGATATTGTGATAGTCAAATGTTTCGTTTGTACTGTT
TAATGTCATGTTTGGATTTGACTGCATTGTATAATTACCAGCGTATGAGA
ATGAAGTTTTGTTGAACAATGGATCCATTTCAAGAAGATTCAGCACCCGT
GTACATCAGGAAGGTCTTGGTTGTTAccaaaaagaatcaaaatagTATTT
CGATTTGCCTTCAGACTTCCATGGAATTTTGA

Coding sequence (CDS) from alignment at scaffold_226:135119..137250

>TCONS_00053186 ID=TCONS_00053186|Name=TCONS_00053186|organism=Clytia hemisphaerica|type=CDS|length=1590bp|location=Sequence derived from alignment at scaffold_226:135119..137250 (Clytia hemisphaerica)
CTAGAGTCTTGTTTCTTTGAGATCGTCACTGTCAATTATTGCATGAAATT
TGGTCTCTGTTATCCCATTCAGCTTAGTGACGTTCTTTACAAAACATTCT
GGGGAATCGAGGTCAGTGCTATTCTCTTCCTCAATACTGTACAATTCTGC
AATAAGTGTTGTGTTATTGTTCAAAGGCGTCAGCGTGGGCGGTGTAAATC
TCAATAAATCATACGCCCCGTTTCCACCCGTAGAATTCTTTTGAGGGGCG
TTTCTGATAATCTCGTTAACTGGCTCATAAGTATTCATTATTGAGGAGGG
CGGACTGCGATGACTGATATTCGGCGTTAAGACGTCGCTACTCTGAGTGG
CTGTTCGGGGCCGCTTGAAGTTTCCATTTTTGGAATCAGCAACACTTGTC
GTATCAAGAAACGATGCCGTACGTCTGACAACAGTTCGGCCGTATTTATC
AGATTCTAAAGTGAATTTCTGATGTTCATTCGATTCAATACCAAGTTTGA
CTTTTAAAAGCCAGAATTGTTTTTGGAATTCGATTCGAAATTCTTTTGAC
ATGATATAGTAAGTAAACGGGTTGGAAACACTGTTCGCGACCAGCATTGT
ACCAGAAACCATGATATAAATATGAACATTATCCACCAAATGTACTTCAG
TAAAAATACTGACCAGCCGAATGATATTCCAGGGTAGCATGAGAATAGCG
AAAACAATAACAACAGGAGCGAGCATGCGCAATGCTTTCTTGATTCCCAT
GATATGATTAGCAATCAATAAAGTGTGTTCGGAGCCTTGAAGCCATTCAT
AAGTCATTTGTTTTTCAAGATATAACTTGATCCGAATGAACGTGAATAGT
ATGATTAACAATGGGCAGATATAccaaaaaatcagtaaaaataaTTGGTA
GCACTGCTCATAAGTTTTGGAGGGCCATCTTGATTGACACCTGACCACGC
CTTGTGGAGAAAATTCCTGGTAACGGAGTACTGGGTACAAGGGTACAGAG
ATAGTCAATAAGGATATAAACCATATACCCGTGATGATCATTTTTGATTG
AGGAAAAGTTAGCTGTTTTCCCATCGCGTGTAAAATCATACGGTACCGAT
GGATAGAAATGGTAGTCATACAACCAAGCGATACCCCATAAAAAGCATCC
GAAATTGTTGGGATAATTTTACAAAGTACAGACCCGAAAGGCCATGAGTT
CGGTTCTAAAGACTGTAAAACCCATAAAGGATAACTGATTACTAGAACGC
ACATGTCAGCGATCGCTAAGTTCATTAAAAACAGATTAGCAATGGTGTAC
ATTTTACGACCTCTGACAATGATGAAACAGACAAAGAGGTTACCGATGAT
TCCCAGTAATGATAAGATACCATTGAAGACAAAGATAATGGTAATAATAG
ATTGTGGGATTGATGTAACTTCTGGTTGAGTAGTATTGGAAATGTTTTGG
TGATTGTTGATAGAAAAGATTAAGGAGATATTGTGATAGTCAAATGTTTC
GTTTGTACTGTTTAATGTCATGTTTGGATTTGACTGCATTGTATAATTAC
CAGCGTATGAGAATGAAGTTTTGTTGAACAATGGATCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033569XLOC_033569Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053186-proteinTCONS_00053186-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053186-exon-scaffold_226-1491911889:135119..137250TCONS_00053186-exon-scaffold_226-1491911889:135119..137250Clytia hemisphaericaexon
TCONS_00053186-exon-scaffold_226-1510915933:135119..137250TCONS_00053186-exon-scaffold_226-1510915933:135119..137250Clytia hemisphaericaexon
TCONS_00053186-exon-scaffold_226-1575043694:135119..137250TCONS_00053186-exon-scaffold_226-1575043694:135119..137250Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_226supercontigscaffold_226:135119..137250 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0179908	0.0835564	0.0613101	0	0.0196603	0.0948773	0.111029	0.0777338	0.288857	0.0186915	0.0245741	0.490798	0.611639	0.0314281	0.0899392	0.401642	0.468452	0.960982	1.02612	0.69567	0.887462	1.41728	1.15389	1.12906	1.57336	0.505949	0.161989	0.0409543	0.125178
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000276GPCR_Rhodpsn
IPR017452GPCR_Rhodpsn_7TM
Vocabulary: Biological Process
TermDefinition
GO:0007186G-protein coupled receptor signaling pathway
Vocabulary: Molecular Function
TermDefinition
GO:0004930G-protein coupled receptor activity
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007186 G-protein coupled receptor signaling pathway
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0004930 G-protein coupled receptor activity
Blast
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BLAST of TCONS_00053186 vs. Swiss-Prot (Human)
Match: OX1R (Orexin receptor type 1 OS=Homo sapiens GN=HCRTR1 PE=1 SV=2)

HSP 1 Score: 108.612 bits (270), Expect = 4.297e-25
Identity = 89/343 (25.95%), Postives = 150/343 (43.73%), Query Frame = 3 
Query:  354 NLFVCFIIVRGRKMYTIANLFLMNLAIADMCVLVISYPLWVLQSLEPNSWPFGSVLCKIIPTISDAFYGVSLGCMTTISIHRYRMILHAMGKQLTFPQSKMIITGIWFISLLTISVPLYPVLRYQEFSPQGVVR------CQSRWPSKTYEQCYQLFLLIFWYICPLLIILFTFIRI--KLY------------------------LEKQMTYEWLQGSEHTLLIANHIMGIKKALRMLAPVVIVFAILMLPWNII----RLVSIFTEVHLVDNVHIYIMVSGTMLVANSVSNPFTYYIMSKEFRIEFQKQFWLLKVKLGI----------ESNEHQKFTLES 1244
            N  VC  + R   M T+ N F++NL++AD+ V  I  P  +L  +   SW FG  LCK+IP +      V++  ++ I++ R+  I H +  + T  +++  I GIW +S L I VP   V+      P+   R      C  RW    Y + Y     I  Y+ PL ++   + +I  KL+                        LE+ ++ E    +   L     +   +K  +ML  V++VFA+  LP +++    R+  +F +    + V+     S  ++ ANS +NP  Y  +S +FR +F+  F      LG            S  H+  +L+S
Sbjct:   64 NTLVCLAVWRNHHMRTVTNYFIVNLSLADVLVTAICLPASLLVDIT-ESWLFGHALCKVIPYLQAVSVSVAVLTLSFIALDRWYAICHPLLFKSTARRARGSILGIWAVS-LAIMVPQAAVMECSSVLPELANRTRLFSVCDERWADDLYPKIYHSCFFIVTYLAPLGLMAMAYFQIFRKLWGRQIPGTTSALVRNWKRPSDQLGDLEQGLSGEPQPRARAFLAEVKQMRARRKTAKMLMVVLLVFALCYLPISVLNVLKRVFGMFRQASDREAVYACFTFSHWLVYANSAANPIIYNFLSGKFREQFKAAFSCCLPGLGPCGSLKAPSPRSSASHKSLSLQS 404
The following BLAST results are available for this feature:
BLAST of TCONS_00053186 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
OX1R4.297e-2525.95Orexin receptor type 1 OS=Homo sapiens GN=HCRTR1 P... [more]
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