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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053728 ID=TCONS_00053728|Name=TCONS_00053728|organism=Clytia hemisphaerica|type=transcript|length=743bp
CCGCCACGTGTTCCTGCTTGGAGTAACAGTCATCATCACTTAGGTTATTT
AGATTCTCATTACTACGCGCCAACGTGAAAAGTGATTTGAGGTTGTTGTC
ATCGTTGATAAGTCGTTTActgttacttctcgttaccttAGCAACGGGAC
CATGGTTTTCATCCGGGATAGAAAAACTGACATTTCTCTGGACATCTTTC
GATCCATTTGATCTGTGACTTCGGCTAGCGGTAATAtttccttttgaaat
attcgatctATCATTTATCGATTCTGCATAATGCAATTTTTCAGATGAAA
TCATATTTTCGCTACCTCTTCCTTGAGAAAAAGAATCGGTTATATTTCTA
CTGCGTTCATACGAACTCCTCTCCTCAAAAACGGTGTTTTTAGTAACGAA
GGAGTCTGGCGTGTTTATATTATTTGTAGCATGTCCTTCTTCGGGAAGTG
TATTTTTCGTTTCTTCAACTTCTCTTGATAAAACATTTGTAACTAGATCA
TTTTCATAACCATTTTGCGGGCTTTCAATTTCATCATCACCACAAAGATT
ATTGTTGCCATCAGGGTAAAACTTTGTTTCAGGACTATTTTCAAGTAGGT
TTTCAAGAGGATCTAAGGTTGATCTATCTACAGTATCGACATTGTATATT
TCGTCTCGATTATCTGGAGGAATAGTACCATTTTGGTCTTGTTCATACAG
ATCTGAGGCTTTATTCATATGAAGTTCGTTAACAGGGTTTGAA Run BLAST on NCBI protein sequence of TCONS_00053728-protein >TCONS_00053728-protein ID=TCONS_00053728-protein|Name=TCONS_00053728-protein|organism=Clytia hemisphaerica|type=polypeptide|length=247bp
SNPVNELHMNKASDLYEQDQNGTIPPDNRDEIYNVDTVDRSTLDPLENLL
ENSPETKFYPDGNNNLCGDDEIESPQNGYENDLVTNVLSREVEETKNTLP
EEGHATNNINTPDSFVTKNTVFEERSSYERSRNITDSFSQGRGSENMISS
EKLHYAESINDRSNISKGNITASRSHRSNGSKDVQRNVSFSIPDENHGPV
AKVTRSNSKRLINDDNNLKSLFTLARSNENLNNLSDDDCYSKQEHVA Run BLAST on NCBI transcript from alignment at scaffold_233:486509..487251 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00053728 ID=TCONS_00053728|Name=TCONS_00053728|organism=Clytia hemisphaerica|type=transcript|length=743bp|location=Sequence derived from alignment at scaffold_233:486509..487251 (Clytia hemisphaerica)
TTCAAACCCTGTTAACGAACTTCATATGAATAAAGCCTCAGATCTGTATG
AACAAGACCAAAATGGTACTATTCCTCCAGATAATCGAGACGAAATATAC
AATGTCGATACTGTAGATAGATCAACCTTAGATCCTCTTGAAAACCTACT
TGAAAATAGTCCTGAAACAAAGTTTTACCCTGATGGCAACAATAATCTTT
GTGGTGATGATGAAATTGAAAGCCCGCAAAATGGTTATGAAAATGATCTA
GTTACAAATGTTTTATCAAGAGAAGTTGAAGAAACGAAAAATACACTTCC
CGAAGAAGGACATGCTACAAATAATATAAACACGCCAGACTCCTTCGTTA
CTAAAAACACCGTTTTTGAGGAGAGGAGTTCGTATGAACGCAGTAGAAAT
ATAACCGATTCTTTTTCTCAAGGAAGAGGTAGCGAAAATATGATTTCATC
TGAAAAATTGCATTATGCAGAATCGATAAATGATagatcgaatatttcaa
aaggaaaTATTACCGCTAGCCGAAGTCACAGATCAAATGGATCGAAAGAT
GTCCAGAGAAATGTCAGTTTTTCTATCCCGGATGAAAACCATGGTCCCGT
TGCTaaggtaacgagaagtaacagTAAACGACTTATCAACGATGACAACA
ACCTCAAATCACTTTTCACGTTGGCGCGTAGTAATGAGAATCTAAATAAC
CTAAGTGATGATGACTGTTACTCCAAGCAGGAACACGTGGCGG Coding sequence (CDS) from alignment at scaffold_233:486509..487251 >TCONS_00053728 ID=TCONS_00053728|Name=TCONS_00053728|organism=Clytia hemisphaerica|type=CDS|length=741bp|location=Sequence derived from alignment at scaffold_233:486509..487251 (Clytia hemisphaerica)
TCAAACCCTGTTAACGAACTTCATATGAATAAAGCCTCAGATCTGTATGA
ACAAGACCAAAATGGTACTATTCCTCCAGATAATCGAGACGAAATATACA
ATGTCGATACTGTAGATAGATCAACCTTAGATCCTCTTGAAAACCTACTT
GAAAATAGTCCTGAAACAAAGTTTTACCCTGATGGCAACAATAATCTTTG
TGGTGATGATGAAATTGAAAGCCCGCAAAATGGTTATGAAAATGATCTAG
TTACAAATGTTTTATCAAGAGAAGTTGAAGAAACGAAAAATACACTTCCC
GAAGAAGGACATGCTACAAATAATATAAACACGCCAGACTCCTTCGTTAC
TAAAAACACCGTTTTTGAGGAGAGGAGTTCGTATGAACGCAGTAGAAATA
TAACCGATTCTTTTTCTCAAGGAAGAGGTAGCGAAAATATGATTTCATCT
GAAAAATTGCATTATGCAGAATCGATAAATGATagatcgaatatttcaaa
aggaaaTATTACCGCTAGCCGAAGTCACAGATCAAATGGATCGAAAGATG
TCCAGAGAAATGTCAGTTTTTCTATCCCGGATGAAAACCATGGTCCCGTT
GCTaaggtaacgagaagtaacagTAAACGACTTATCAACGATGACAACAA
CCTCAAATCACTTTTCACGTTGGCGCGTAGTAATGAGAATCTAAATAACC
TAAGTGATGATGACTGTTACTCCAAGCAGGAACACGTGGCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00053728-exon-scaffold_233-1491911889:486509..487251 | TCONS_00053728-exon-scaffold_233-1491911889:486509..487251 | Clytia hemisphaerica | exon |
| TCONS_00053728-exon-scaffold_233-1510915933:486509..487251 | TCONS_00053728-exon-scaffold_233-1510915933:486509..487251 | Clytia hemisphaerica | exon |
| TCONS_00053728-exon-scaffold_233-1575043694:486509..487251 | TCONS_00053728-exon-scaffold_233-1575043694:486509..487251 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_233 | supercontig | scaffold_233:486509..487251 . |
Blast
The following BLAST results are available for this feature:
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