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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058824 ID=TCONS_00058824|Name=TCONS_00058824|organism=Clytia hemisphaerica|type=transcript|length=508bp
AGACAACTGAACAACCTCGATAGTTTGTCCAGCTTTTTTTTACAAGCAAA
CTGTTATAAGGTGGGTAAATGTATTTTTGAGATGTATTCAATATTGCTTT
TTTTGGACAACTTCATAAGGAGACTTCATCGAAGGAAAATTTAGAAAATG
AAGGTCATTCTTTTCGTTGCACTTTTTGCCACCGTTTACTCAGTGCAATA
CGAGCTCAAATTATCACAAGCCACATATGTTACCCATCATGTTCATGTAG
TTGATTTGTCTGATATTCAAGATGCTGCTCTGCACCAAACTGACTGCAAC
TCTGGAACTGGTTTGGATGTTCAAACTTCACTGGACACTTACCATTACCA
CGAGGTTAAATTGTGTAAAGATGGAAATGATATCAAATTCTTAACTTGCG
ATGATCAAGACGATTGTTGGGACCAGCACCCAAGAATACTCAAacaattg
taaaatattttatcgttttattttttttgcgagaaaacattaaaaaggaa
aaggaatt Run BLAST on NCBI protein sequence of TCONS_00058824-protein >TCONS_00058824-protein ID=TCONS_00058824-protein|Name=TCONS_00058824-protein|organism=Clytia hemisphaerica|type=polypeptide|length=101bp
MKVILFVALFATVYSVQYELKLSQATYVTHHVHVVDLSDIQDAALHQTDC
NSGTGLDVQTSLDTYHYHEVKLCKDGNDIKFLTCDDQDDCWDQHPRILKQ
L Run BLAST on NCBI transcript from alignment at scaffold_314:256674..258897+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00058824 ID=TCONS_00058824|Name=TCONS_00058824|organism=Clytia hemisphaerica|type=transcript|length=2224bp|location=Sequence derived from alignment at scaffold_314:256674..258897+ (Clytia hemisphaerica)
AGACAACTGAACAACCTCGATAGTTTGTCCAGCTTTTTTTTACAAGCAAA
CTGTTATAAGGTGGGTAAATGTATTTTTGAGATGTATTCAATATTGCTTT
TTTTGGACAACTTCATAAGGAGACTTCATCGAAGGAAAATTTAGGTGAGA
ATCTACATCTATAACTTTTTTGGAAACTtgctttgtttaaccctttaagt
gccgatgtcgtatatatacgacatgggatatataggagggcgaagccctc
ctgtaatgcccagtttgagttagaaatcgttatttttggtcgaactcgta
ggaattagattgtcctttatggtcaagcaaNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNtaattccttctagatcaggagatat
aagcccttaaagtttgaactagcgatttttaaaaaaaaacttagaaaaaa
ggaccctggcactcaaagggttaagaaaGTTGCAGATaaaagcttgtttt
ttttttgaattttctgacaaCATAACCCCTTGTAATACGGGTAAAAGTTG
CTATTTAGTCCCTAAGTATTATTCCGGACGTTTGTCCTTAACACGGCCTT
AACGGCTAAGATATAAAGGACTCCTAGTCaaaaacagatttttcaaatta
cGTAACGgtctctttttattttttttgtttcctttttttctgTTTGTCCA
TAGAAAATGAAGGTCATTCTTTTCGTTGCACTTTTTGCCACCGTTTACTC
AGTGCAATACGAGCTCAAATTATCACAAGCCACATATGTTACCCATCATG
TTCATGTAGTTGATTTGTCTGATATTCAAGATGCTGCTCTGCACCAAACT
GACTGCAACTCTGGAACTGGTATAAGCATTTCAATGATTATTCgaataca
ttttttataagaaatatttcCACGAAAACAAATTGACCAAGAATTTAATT
aaaagaaataatttaatttgttaGCCCTCTAGTaagcaaaataaatcaaa
tttcaagAGATAAATTCTATAGACGAATAAGATTTTTAAAGGAACTTAAT
ATCTACTGAAAGGGTATCATCCTCTGAGGcaatgaaacaggggtgtatct
TTAATTCTTGTGTTAACCTTTTCAAGGTTTGGATGTTCAAACTTCACTGG
ACACTTACCATTACCACGAGGTTAAATTGTGTAAAGATGGAAATGATATC
AAATTCTTAACTTGCGATGATCAAGACGATTGTTGGGACCAGCACCCAAG
AATACTCAAacaattgtaaaatattttatcgttttattttttttgcgaga
aaacattaaaaaggaaaaggaatt Coding sequence (CDS) from alignment at scaffold_314:256674..258897+ >TCONS_00058824 ID=TCONS_00058824|Name=TCONS_00058824|organism=Clytia hemisphaerica|type=CDS|length=612bp|location=Sequence derived from alignment at scaffold_314:256674..258897+ (Clytia hemisphaerica)
ATGAAGGTCATTCTTTTCGTTGCACTTTTTGCCACCGTTTACTCAGTGCA
ATACGAGCTCAAATTATCACAAGCCACATATGTTACCCATCATGTTCATG
TAGTTGATTTGTCTGATATTCAAGATGCTGCTCTGCACCAAACTGACTGC
AACTCTGGAACTGGTTTGGATGTTCAAACTTCACTGGACACTTACCATTA
CCACGAGGTTAAATTGTGTAAAGATGGAAATGATATCAAATTCTTAACTT
GCGATGATCAAGACGATTGTTGGGACCAGCACCCAAGAATACTCAAacaa
ttgtaaATGAAGGTCATTCTTTTCGTTGCACTTTTTGCCACCGTTTACTC
AGTGCAATACGAGCTCAAATTATCACAAGCCACATATGTTACCCATCATG
TTCATGTAGTTGATTTGTCTGATATTCAAGATGCTGCTCTGCACCAAACT
GACTGCAACTCTGGAACTGGTTTGGATGTTCAAACTTCACTGGACACTTA
CCATTACCACGAGGTTAAATTGTGTAAAGATGGAAATGATATCAAATTCT
TAACTTGCGATGATCAAGACGATTGTTGGGACCAGCACCCAAGAATACTC
AAacaattgtaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00058824-exon-scaffold_314-1491911889:256674..256817 | TCONS_00058824-exon-scaffold_314-1491911889:256674..256817 | Clytia hemisphaerica | exon |
| TCONS_00058824-exon-scaffold_314-1510915933:256674..256817 | TCONS_00058824-exon-scaffold_314-1510915933:256674..256817 | Clytia hemisphaerica | exon |
| TCONS_00058824-exon-scaffold_314-1575043694:256674..256817 | TCONS_00058824-exon-scaffold_314-1575043694:256674..256817 | Clytia hemisphaerica | exon |
| TCONS_00058824-exon-scaffold_314-1491911889:258277..258442 | TCONS_00058824-exon-scaffold_314-1491911889:258277..258442 | Clytia hemisphaerica | exon |
| TCONS_00058824-exon-scaffold_314-1510915933:258277..258442 | TCONS_00058824-exon-scaffold_314-1510915933:258277..258442 | Clytia hemisphaerica | exon |
| TCONS_00058824-exon-scaffold_314-1575043694:258277..258442 | TCONS_00058824-exon-scaffold_314-1575043694:258277..258442 | Clytia hemisphaerica | exon |
| TCONS_00058824-exon-scaffold_314-1491911889:258700..258897 | TCONS_00058824-exon-scaffold_314-1491911889:258700..258897 | Clytia hemisphaerica | exon |
| TCONS_00058824-exon-scaffold_314-1510915933:258700..258897 | TCONS_00058824-exon-scaffold_314-1510915933:258700..258897 | Clytia hemisphaerica | exon |
| TCONS_00058824-exon-scaffold_314-1575043694:258700..258897 | TCONS_00058824-exon-scaffold_314-1575043694:258700..258897 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_314 | supercontig | scaffold_314:256674..258897 + |
Blast
The following BLAST results are available for this feature:
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