TCONS_00006421 (transcript) - C. hemisphaerica

Overview
NameTCONS_00006421
Unique NameTCONS_00006421
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1810

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00006421 ID=TCONS_00006421|Name=TCONS_00006421|organism=Clytia hemisphaerica|type=transcript|length=1810bp
ctgattttgattttagttGAGATTTGAGCTTTTCGAGAGAATGCGTCTCT
CAAGGCAATGTGTACAGGTCTTCGAAACTTGGCCACAAAGCTTGCTGATA
AACATGCTGCtatcaaaaagttctttcaATTCTGTTGTTGCTGTTTGTTA
GGAGAGATTTCAACCGAAGCTGATGGTTCCGCCCCAGAGAATGAGGGCGG
GGTTGAAGGGGAGGAAGGTGGAGGTGATGAAGGGTTGCCACCAGGCTCAG
CCAGAGCTTCCCAAGCGGCTGCCAATTCTATAAGAGGTAGCCCAGGTGCG
GCTGCAAGTTATATTGAAGATGGAGAGGAGGCTGGACCATCAGGGGAGCC
AGTAGAGGTGACAGAGGATGGGACACCTCTGCACGAGGTTCTCCCACCAC
CAACAACCACACACGAGGTGAAGGAAAATTCGTCAGTGCCGGCGGGTGAA
ACCACCTTGGAGAGTATCGATGATGGGGATGTTGGTTTCATAGAAGCAGC
AGGGGATGAGACCGCTGAAAGTGGGGAGCAAGATGTAGGTTTCATTGAGA
CTGTAGAGGAGGAGGAACCCCTCTGTATCGTTGGTAAGGTCCTCATCACC
CTCTTGCATTATCCTGATGACAACAAATTGGACTTGGCAGTGCTCAAGTT
GGACGAGTTACCAACCGTAGATCGCGGAGGAGCAGAAAACGTAAGCATTC
ATCTTTGTGTGTTGCCAGGACGTAAACAAAGATTCAAAGGTAAACCACAA
TCTGTGTTACAGGACGAATTCAATCAAGCTTTCACTTTCTCCAACATCAC
GCCAGAAACGTTGGAAACGACAGCAATACGTTTACGTGTTTATGGTAAGA
AGGGCTTTCTGAAGCAAAAACTCATCGGTGAAGTGCAGATTGCTTTGGGC
AAAGAGAATTTGACTGATGGAGAAGAGATTTGGAAAAGTCTCAGTCCAAA
AGGAGACGTGCCACCTGATGAAGAAGAAGGTGGAAATTTCAACCTGAGTG
ATCTTTCAAGTTTGGCAAGTTTCGGAGAATCTGCTACCAAGCCGGAATTA
TTGATCAACCTTCATTACACTGATCTTACGGGTCGTTTAACCGTTGAAGT
TATCCAAGCcgctaatttgaagaaaaacactATGATCATTGACCCAGACA
CTTTCGTCAAGATCAAGTGTGTTTCAGGGAAAGGAAAGAGGATCGGTAAA
AGCAAAACAACCGTAAGACGTCTCCAATCGAGCCCCGAATACAACGAGAC
GTTCATTTATCCATTGTCCGATGATGACCTAGAGGATGCAACCATGATGT
TCCAGGTTTATTCAGTCGGAAAACGCCGAAAGAAACGAGAACTGCTTGGC
TGGTTTGCTTATGGCTTGAATAATTCAGGACCAACAGAAGCGGCTCATTG
GCAAGAAATGTGTCAAAATAAAGATTGCGACGTTTGCCACTGGCAAGAAC
TTAAAAGTGTTTGATTTTCAAGAAATAACTATCCATGAAGAAACTTATTC
GGAATTTACTTTCTCGACAAAAAATGCCAAGATTGAATCGACATTGAATT
GCGTTGTTGCCCCCGAATATGTACTGTGTATATAACTGTAAATATGAAAA
TGGATTTGTATTTTTATAAGTATTATATAAGGATTTCGAATTTAAAACAT
TATCtgttataccttatcggggaaaaaatgtcgggggaaagtgacgaaaa
ttttgagggggtgacgaaattttttccCGACAtcttatcacccgaccaaa
acttgtacccaatttttttattcccgaccaaaatatttacccgaaatttt
atacggcaac
Run BLAST on NCBI

protein sequence of TCONS_00006421-protein

>TCONS_00006421-protein ID=TCONS_00006421-protein|Name=TCONS_00006421-protein|organism=Clytia hemisphaerica|type=polypeptide|length=468bp
MCTGLRNLATKLADKHAAIKKFFQFCCCCLLGEISTEADGSAPENEGGVE
GEEGGGDEGLPPGSARASQAAANSIRGSPGAAASYIEDGEEAGPSGEPVE
VTEDGTPLHEVLPPPTTTHEVKENSSVPAGETTLESIDDGDVGFIEAAGD
ETAESGEQDVGFIETVEEEEPLCIVGKVLITLLHYPDDNKLDLAVLKLDE
LPTVDRGGAENVSIHLCVLPGRKQRFKGKPQSVLQDEFNQAFTFSNITPE
TLETTAIRLRVYGKKGFLKQKLIGEVQIALGKENLTDGEEIWKSLSPKGD
VPPDEEEGGNFNLSDLSSLASFGESATKPELLINLHYTDLTGRLTVEVIQ
AANLKKNTMIIDPDTFVKIKCVSGKGKRIGKSKTTVRRLQSSPEYNETFI
YPLSDDDLEDATMMFQVYSVGKRRKKRELLGWFAYGLNNSGPTEAAHWQE
MCQNKDCDVCHWQELKSV
Run BLAST on NCBI

transcript from alignment at sc0000067:301480..305262+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00006421 ID=TCONS_00006421|Name=TCONS_00006421|organism=Clytia hemisphaerica|type=transcript|length=3783bp|location=Sequence derived from alignment at sc0000067:301480..305262+ (Clytia hemisphaerica)
ctgattttgattttagttGAGATTTGAGCTTTTCGAGAGAATGCGTCTCT
CAAGGCAATGTGTACAGGTCTTCGAAACTTGGCCACAAAGCTTGCTGATA
AACATGCTGCtatcaaaaagttctttcaATTCTGTTGTTGCTGTTTGTTA
GGAGAGATTTCAACCGAAGCTGATGGTTCCGCCCCAGAGAATGAGGGCGG
GGTTGAAGGGGAGGAAGGTGGAGGTGATGAAGGGTTGCCACCAGGCTCAG
CCAGAGCTTCCCAAGCGGCTGCCAATTCTATAAGAGGTAGCCCAGGTGCG
GCTGCAAGTTATATTGAAGATGGAGAGGAGGCTGGACCATCAGGGGAGCC
AGTAGAGGTGACAGAGGATGGGACACCTCTGCACGAGGTTCTCCCACCAC
CAACAACCACACACGAGGTTCTCCCACCACCAACAACCACACACGAGGTG
AAGGAAAATTCGTCAGTGCCGGCGGGTGAAACCACCTTGGAGAGTATCGA
TGATGGGGATGTTGGTTTCATAGAAGCAGCAGGGGATGAGACCGCTGAAA
GTGGGGAGCAAGATGTAGGTTTCATTGAGACTGTAGAGGAGGAGGAACCC
CTCTGTATCGTTGGTAAGGTCCTCATCACCCTCTTGCATTATCCTGATGA
CAACAAATTGGACTTGGCAGTGCTCAAGTTGGACGAGTTACCAACCGTAG
ATCGCGGAGGAGCAGAAAACGTAAGCATTCATCTTTGTGTGTTGCCAGGA
CGTAAACAAAGATTCAAAGGTAAACCACAATCTGTGTTACAGGACGAATT
CAATCAAGCTTTCACTTTCTCCAACATCACGCCAGAAACGTTGGAAACGA
CAGCAATACGTTTACGTGTTTATGGTAAGAAGGGCTTTCTGAAGCAAAAA
CTCATCGGTGAAGTGCAGATTGCTTTGGGCAAAGAGAATTTGACTGATGG
AGAAGAGATTTGGAAAAGTCTCAGTCCAAAAGGAGACGTGGTAAGataaa
tctttttatttcattaaCGGAAAATAATTNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNcgtttatttggaacctaagagtaccctCCTGTCATTGA
AAGTTAAAAGATACGCAGAGGAGAAACataaccaaaaatcaaaataacat
tcCTAACGATATCTCGACCTTTGTCGTGTCTTTTTCAAGTTCAGCTAAGA
TTAAATAATAATTTCAAGGAGCTTCGTAGATTAAATCGGGCTGATAATTG
GAACTCATGTATTAGAATAGCATTAAAATACCGAATAAGGGCTCTCGGGT
CAAGCATATACACTTAATAGCTGGTGTGAAAGCGTCGAATCTAAAAATAG
TTGAACATACTAACGCCACTATTTTGATTTCAATACAGAGTTTCTGATAA
CCAAAGTTTTCCCTCCATAGCCACCTGATGAAGAAGAAGGTGGAAATTTC
AACCTGAGTGATCTTTCAAGTTTGGCAAGTTTCGGAGAATCTGCTACCAA
GCCGGAATTATTGATCAACCTTCATTACACTGATCTTACGGGTCGTTTAA
CCGTTGAAGTTATCCAAGCcgctaatttgaagaaaaacactATGATCATT
GACCCAGGTATGATCTAATACTGCATTGATAATTTCAATCATACCATACC
TTAATCGGGAAAAAAGTTGGCATTTCAAATAGTCATTGGGGAAATATTTT
GTCACCTTGttgaaacaatttttaaatttttcaggcCGAAACATACAATT
TAGTTCCTTCAAGTAATATTTTCGGCTAGGGtataaaaaattgggtaaaa
ttTTGTCGTGTGATGAGATGTCgggttttttttccaacagggGAAAAATA
TGCTACCCTCTTAAAATGTTCACCACTTTCCTCCGACTTTTTTTCCTCAA
TAAGGAAGAACTTTCATCCAGCAATGGAACCTTTATGAGAGTTGCACACG
ACACGAATTGGGTGTTTGGTATGAAAGATGACCCATGTTGAGAGTGCCAA
GTTAAGCTATTACAGTTTTCGATTTTATTTCTATACTTTCTTACATTAGA
CACTTTCGTCAAGATCAAGTGTGTTTCAGGGAAAGGAAAGAGGATCGGTA
AAAGCAAAACAACCGTAAGACGTCTCCAATCGAGCCCCGAATACAACGAG
ACGTTCATTTATCCATTGTCCGATGATGACCTAGAGGATGCAACCATGAT
GTTCCAGGTCCGTTGAGTCTGGAAAACACACCCTTGTCTCAGTGACTAAT
GTCCAagccaaagtttgaaaattgatccttagagagactaaattACGAAA
ATTCTgtccattttttgacgtttttgccacccttagagagactattttcc
cgaaatttcagccaatatttcaagaatttatgaccctttgaggaagtcaa
ttttttattttcgtaattttgctCGTTGAAACCTTTACATAGACTccccc
tttgagggactttcgagAGTGTGATAGGGATGGCGTCCATtctgcctaag
taccccccccaaatctttcattttgttcAATTCCTCATTTCAGCCTCATT
TAAAAAGGTATCTTTTATTTTACTCAAGGTTTATTCAGTCGGAAAACGCC
GAAAGAAACGAGAACTGCTTGGCTGGTTTGCTTATGGCTTGAATAATTCA
GGACCAACAGAAGCGGCTCATTGGCAAGAAATGTGTCAAAATAAAGATTG
CGACGTTTGCCACTGGCAAGAACTTAAAAGTGTTTGATTTTCAAGAAATA
ACTATCCATGAAGAAACTTATTCGGAATTTACTTTCTCGACAAAAAATGC
CAAGATTGAATCGACATTGAATTGCGTTGTTGCCCCCGAATATGTACTGT
GTATATAACTGTAAATATGAAAATGGATTTGTATTTTTATAAGTATTATA
TAAGGATTTCGAATTTAAAACATTATCtgttataccttatcggggaaaaa
atgtcgggggaaagtgacgaaaattttgagggggtgacgaaattttttcc
CGACAtcttatcacccgaccaaaacttgtacccaatttttttattcccga
ccaaaatatttacccgaaattttatacggcaac

Coding sequence (CDS) from alignment at sc0000067:301480..305262+

>TCONS_00006421 ID=TCONS_00006421|Name=TCONS_00006421|organism=Clytia hemisphaerica|type=CDS|length=1407bp|location=Sequence derived from alignment at sc0000067:301480..305262+ (Clytia hemisphaerica)
ATGTGTACAGGTCTTCGAAACTTGGCCACAAAGCTTGCTGATAAACATGC
TGCtatcaaaaagttctttcaATTCTGTTGTTGCTGTTTGTTAGGAGAGA
TTTCAACCGAAGCTGATGGTTCCGCCCCAGAGAATGAGGGCGGGGTTGAA
GGGGAGGAAGGTGGAGGTGATGAAGGGTTGCCACCAGGCTCAGCCAGAGC
TTCCCAAGCGGCTGCCAATTCTATAAGAGGTAGCCCAGGTGCGGCTGCAA
GTTATATTGAAGATGGAGAGGAGGCTGGACCATCAGGGGAGCCAGTAGAG
GTGACAGAGGATGGGACACCTCTGCACGAGGTTCTCCCACCACCAACAAC
CACACACGAGGTGAAGGAAAATTCGTCAGTGCCGGCGGGTGAAACCACCT
TGGAGAGTATCGATGATGGGGATGTTGGTTTCATAGAAGCAGCAGGGGAT
GAGACCGCTGAAAGTGGGGAGCAAGATGTAGGTTTCATTGAGACTGTAGA
GGAGGAGGAACCCCTCTGTATCGTTGGTAAGGTCCTCATCACCCTCTTGC
ATTATCCTGATGACAACAAATTGGACTTGGCAGTGCTCAAGTTGGACGAG
TTACCAACCGTAGATCGCGGAGGAGCAGAAAACGTAAGCATTCATCTTTG
TGTGTTGCCAGGACGTAAACAAAGATTCAAAGGTAAACCACAATCTGTGT
TACAGGACGAATTCAATCAAGCTTTCACTTTCTCCAACATCACGCCAGAA
ACGTTGGAAACGACAGCAATACGTTTACGTGTTTATGGTAAGAAGGGCTT
TCTGAAGCAAAAACTCATCGGTGAAGTGCAGATTGCTTTGGGCAAAGAGA
ATTTGACTGATGGAGAAGAGATTTGGAAAAGTCTCAGTCCAAAAGGAGAC
GTGCCACCTGATGAAGAAGAAGGTGGAAATTTCAACCTGAGTGATCTTTC
AAGTTTGGCAAGTTTCGGAGAATCTGCTACCAAGCCGGAATTATTGATCA
ACCTTCATTACACTGATCTTACGGGTCGTTTAACCGTTGAAGTTATCCAA
GCcgctaatttgaagaaaaacactATGATCATTGACCCAGACACTTTCGT
CAAGATCAAGTGTGTTTCAGGGAAAGGAAAGAGGATCGGTAAAAGCAAAA
CAACCGTAAGACGTCTCCAATCGAGCCCCGAATACAACGAGACGTTCATT
TATCCATTGTCCGATGATGACCTAGAGGATGCAACCATGATGTTCCAGGT
TTATTCAGTCGGAAAACGCCGAAAGAAACGAGAACTGCTTGGCTGGTTTG
CTTATGGCTTGAATAATTCAGGACCAACAGAAGCGGCTCATTGGCAAGAA
ATGTGTCAAAATAAAGATTGCGACGTTTGCCACTGGCAAGAACTTAAAAG
TGTTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003662XLOC_003662Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006421-exon-sc0000067-1491911889:301480..301866TCONS_00006421-exon-sc0000067-1491911889:301480..301866Clytia hemisphaericaexon
TCONS_00006421-exon-sc0000067-1510915933:301480..301866TCONS_00006421-exon-sc0000067-1510915933:301480..301866Clytia hemisphaericaexon
TCONS_00006421-exon-sc0000067-1575043694:301480..301866TCONS_00006421-exon-sc0000067-1575043694:301480..301866Clytia hemisphaericaexon
TCONS_00006421-exon-sc0000067-1491911889:301897..302469TCONS_00006421-exon-sc0000067-1491911889:301897..302469Clytia hemisphaericaexon
TCONS_00006421-exon-sc0000067-1510915933:301897..302469TCONS_00006421-exon-sc0000067-1510915933:301897..302469Clytia hemisphaericaexon
TCONS_00006421-exon-sc0000067-1575043694:301897..302469TCONS_00006421-exon-sc0000067-1575043694:301897..302469Clytia hemisphaericaexon
TCONS_00006421-exon-sc0000067-1491911889:303600..303786TCONS_00006421-exon-sc0000067-1491911889:303600..303786Clytia hemisphaericaexon
TCONS_00006421-exon-sc0000067-1510915933:303600..303786TCONS_00006421-exon-sc0000067-1510915933:303600..303786Clytia hemisphaericaexon
TCONS_00006421-exon-sc0000067-1575043694:303600..303786TCONS_00006421-exon-sc0000067-1575043694:303600..303786Clytia hemisphaericaexon
TCONS_00006421-exon-sc0000067-1491911889:304229..304386TCONS_00006421-exon-sc0000067-1491911889:304229..304386Clytia hemisphaericaexon
TCONS_00006421-exon-sc0000067-1510915933:304229..304386TCONS_00006421-exon-sc0000067-1510915933:304229..304386Clytia hemisphaericaexon
TCONS_00006421-exon-sc0000067-1575043694:304229..304386TCONS_00006421-exon-sc0000067-1575043694:304229..304386Clytia hemisphaericaexon
TCONS_00006421-exon-sc0000067-1491911889:304758..305262TCONS_00006421-exon-sc0000067-1491911889:304758..305262Clytia hemisphaericaexon
TCONS_00006421-exon-sc0000067-1510915933:304758..305262TCONS_00006421-exon-sc0000067-1510915933:304758..305262Clytia hemisphaericaexon
TCONS_00006421-exon-sc0000067-1575043694:304758..305262TCONS_00006421-exon-sc0000067-1575043694:304758..305262Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006421-proteinTCONS_00006421-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000067supercontigsc0000067:301480..305262 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0297799	0.137631	0.0602152	0.205262	0.181721	1.75204	2.40365	2.63108	1.83444	3.91702	1.42595	12.6923	9.48555	6.9178	8.76786	5.69535	5.03635	1.27922	1.094	5.05865	5.55503	4.40527	4.47832	4.61933	6.2556	1.9291	1.10972	0.142327	0.12504
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000008C2_dom
Blast
[Close]
BLAST of TCONS_00006421 vs. Swiss-Prot (Human)
Match: SYT14 (Synaptotagmin-14 OS=Homo sapiens GN=SYT14 PE=1 SV=2)

HSP 1 Score: 167.933 bits (424), Expect = 1.250e-44
Identity = 96/298 (32.21%), Postives = 158/298 (53.02%), Query Frame = 1 
Query:  565 EPLCIVGKVLITLLHYPDDNKLDLAVLKLDELPTVDRGGAENVSIHLCVLPGRKQRFKGKPQSVLQDEFNQAFTFSNITPETLETTAIRLRVYGKKGFLKQKLIGEVQIALGKENLTDGEEIWKSLSPKGDVPPDEEEGG--NFNLSDLSSLASFGESATKPELLINLHYTDLTGRLTVEVIQAANLKKNTMIIDPDTFVKIKCVSGKGKRIGKSKTTVRRLQSSPEYNETFIYPLSDDDLEDATMMFQVYSVGKRRKKRELLGWFAYGLNNSGPTEAAHWQEMCQNKDCDVCHWQEL 1452
            EP    G + +T  +   + KL + V  + ++PT +R G  +  +HL +LP +KQR K   Q      F + F F+++  E +   A+R R+YG     K+K++GE    L K NL     +   L P  +    + +      + S+ +S     E  + PE+LI L Y   TGRL+ EVI+ ++ K       P+T+VK+  ++  G+ + K KT++RR Q +P Y ETF++ ++   L D T++  VY+  +  K++E++GW + GLN+SG  E  HW EM ++K   VC W  L
Sbjct:  256 EPEAKYGTLDVTFDYDSQEQKLLVTVTAVTDIPTYNRTGGNSWQVHLVLLPIKKQRAKTSIQRGPCPVFTETFKFNHVESEMIGNYAVRFRLYGVHRMKKEKIVGEKIFYLTKLNLQGKMSLPVILEPSYNHSGCDSQMSVSEMSCSESTSSCQSLEHGSVPEILIGLLYNATTGRLSAEVIKGSHFKNLAANRPPNTYVKLTLLNSMGQEMSKCKTSIRRGQPNPVYKETFVFQVALFQLSDVTLILSVYN-KRSMKRKEMIGWISLGLNSSGEEELNHWTEMKESKGQQVCRWHAL 552
The following BLAST results are available for this feature:
BLAST of TCONS_00006421 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SYT141.250e-4432.21Synaptotagmin-14 OS=Homo sapiens GN=SYT14 PE=1 SV=... [more]
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