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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00065597 ID=TCONS_00065597|Name=TCONS_00065597|organism=Clytia hemisphaerica|type=transcript|length=1441bpRun BLAST on NCBI transcript from alignment at scaffold_440:222963..236968- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00065597 ID=TCONS_00065597|Name=TCONS_00065597|organism=Clytia hemisphaerica|type=transcript|length=14006bp|location=Sequence derived from alignment at scaffold_440:222963..236968- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00065597 vs. Swiss-Prot (Human)
Match: TMPS9 (Transmembrane protease serine 9 OS=Homo sapiens GN=TMPRSS9 PE=1 SV=2) HSP 1 Score: 243.047 bits (619), Expect = 2.907e-70 Identity = 161/466 (34.55%), Postives = 247/466 (53.00%), Query Frame = 2
Query: 131 RIVGGVNAAPGDLPWQAAMRSRNSGKPFCGATLISKKWAISAAHC----QIRAGQQIVLGAHNFRLGSEGSRQIRTVRRAINHQGYNDRTMTNDIALVELSQEVEFNEFVKPACVLDSSKQLAAETPVVISGWGTTASGG-SQPNILQEAEVKVVSNQVCNSRYGNGIDQTMLCAAAR-GK-DSCQGDSGGPLVVDLKDSNGGDRFFLAGVVSFGIGCANPNYPGVYSNVASLRNWI--QTNLASAGVQXXXXXXXXXXXXXXXXXXXXXXXXXXSDAFNDFSV-------------CGKTKNTRFLDSISRIVGGVNAAPGDLPWQAAMRRTDSGKPFCGATLISKKWAISAAHC-------QIRAGQQIVLGAHNFRLGAEASRQIRTVRRAINHQGYNDRTMTNDIALVELSQEVEFDEFVKPACVLDSSKQLAAETPVVISGWGTTASG-GSQPNILQEAEV 1438
RIVGG+ A+PG+ PWQA++R + FCGA +I+ +W +SAAHC Q +GA + GSE S V + + H YN T D+A++EL+ + F ++P C+ ++ +ISGWG +P +LQ+A V+++ +C S YG+ + M+CA GK DSCQGDSGGPLV + + +G RFFLAG+VS+GIGCA PGVY+ V LR+WI T AS + P P T P + +T + + S CG ++ +R+VGG AA G++PWQ +++ + + FCGAT++ +W +SAAHC Q+RA LG + LG S +RR + H YN + D+A++EL+ + F+++++P C+ + ++ +ISGWG T G ++P +LQ+A V
Sbjct: 202 RIVGGMEASPGEFPWQASLRENK--EHFCGAAIINARWLVSAAHCFNEFQDPTKWVAYVGA-TYLSGSEASTVRAQVVQIVKHPLYNADTADFDVAVLELTSPLPFGRHIQPVCLPAATHIFPPSKKCLISGWGYLKEDFLVKPEVLQKATVELLDQALCASLYGHSLTDRMVCAGYLDGKVDSCQGDSGGPLVCE--EPSG--RFFLAGIVSWGIGCAEARRPGVYARVTRLRDWILEATTKASMPLAPTMAPAPAAPSTAWPTSPESPVVSTPTKSMQALSTVPLDWVTVPKLQECGARPA---MEKPTRVVGGFGAASGEVPWQVSLK--EGSRHFCGATVVGDRWLLSAAHCFNHTKVEQVRAH----LGTASL-LGLGGSPVKIGLRRVVLHPLYNPGILDFDLAVLELASPLAFNKYIQPVCLPLAIQKFPVGRKCMISGWGNTQEGNATKPELLQKASV 650 HSP 2 Score: 167.933 bits (424), Expect = 3.397e-44 Identity = 92/251 (36.65%), Postives = 145/251 (57.77%), Query Frame = 2
Query: 116 LDQISRIVGGVNAAPGDLPWQAAMRSRNSGKPFCGATLISKKWAISAAHC-------QIRAGQQIVLGAHNFRLGSEGSRQIRTVRRAINHQGYNDRTMTNDIALVELSQEVEFNEFVKPACVLDSSKQLAAETPVVISGWGTTASG-GSQPNILQEAEVKVVSNQVCNSRYGNGIDQTMLCAA-ARGK-DSCQGDSGGPLVVDLKDSNGGDRFFLAGVVSFGIGCANPNYPGVYSNVASLRNWIQTNLAS 838
+++ +R+VGG AA G++PWQ +++ + FCGAT++ +W +SAAHC Q+RA LG + LG GS +RR + H YN + D+A++EL+ + FN++++P C+ + ++ +ISGWG T G ++P +LQ+A V ++ + C+ Y + M+CA GK DSCQGDSGGPL + F+LAG+VS+GIGCA PGVY+ + L+ WI ++S
Sbjct: 498 MEKPTRVVGGFGAASGEVPWQVSLK--EGSRHFCGATVVGDRWLLSAAHCFNHTKVEQVRAH----LGTASL-LGLGGSPVKIGLRRVVLHPLYNPGILDFDLAVLELASPLAFNKYIQPVCLPLAIQKFPVGRKCMISGWGNTQEGNATKPELLQKASVGIIDQKTCSVLYNFSLTDRMICAGFLEGKVDSCQGDSGGPLACE----EAPGVFYLAGIVSWGIGCAQVKKPGVYTRITRLKGWILEIMSS 737 HSP 3 Score: 164.851 bits (416), Expect = 4.355e-43 Identity = 94/241 (39.00%), Postives = 136/241 (56.43%), Query Frame = 2
Query: 125 ISRIVGGVNAAPGDLPWQAAMRSRNSGKPFCGATLISKKWAISAAHCQIRAG---QQIVLGAHNFRLGSEGSRQIRTVRRAINHQGYNDRTMTNDIALVELSQEVEFNEFVKPACVLDSSKQLAAETPVVISGWGTTASGGSQPNILQEAEVKVVSNQVCNSRYGNGIDQTMLCAAAR--GKDSCQGDSGGPLVVDLKDSNGGDRFFLAGVVSFGIGCANPNYPGVYSNVASLRNWIQTNL 832
++RIVGG A G+ PWQ ++ R + CGA L++++W +SAAHC G Q F G+EG Q+ V R H YN T+ D+AL+EL+ V + V+P C+ + + + T VI+GWG+ GGS LQ+A V+++S Q C Y I MLCA G DSC GD+GGPL ++ +G R+ L GV S+G GC P++PGVY+ VA++R WI ++
Sbjct: 824 LTRIVGGSAAGRGEWPWQVSLWLRRR-EHRCGAVLVAERWLLSAAHCFDVYGDPKQWAAFLGTPFLSGAEG--QLERVARIYKHPFYNLYTLDYDVALLELAGPVRRSRLVRPICLPEPAPRPPDGTRCVITGWGSVREGGSMARQLQKAAVRLLSEQTCRRFYPVQISSRMLCAGFPQGGVDSCSGDAGGPLAC--REPSG--RWVLTGVTSWGYGCGRPHFPGVYTRVAAVRGWIGQHI 1057 HSP 4 Score: 92.8189 bits (229), Expect = 9.151e-20 Identity = 53/153 (34.64%), Postives = 85/153 (55.56%), Query Frame = 2
Query: 998 RIVGGVNAAPGDLPWQAAMRRTDSGKPFCGATLISKKWAISAAHC----QIRAGQQIVLGAHNFRLGAEASRQIRTVRRAINHQGYNDRTMTNDIALVELSQEVEFDEFVKPACVLDSSKQLAAETPVVISGWGTTASGG-SQPNILQEAEVK 1441
RIVGG+ A+PG+ PWQA++R ++ + FCGA +I+ +W +SAAHC Q +GA + G+EAS V + + H YN T D+A++EL+ + F ++P C+ ++ +ISGWG +P +LQ+A V+
Sbjct: 202 RIVGGMEASPGEFPWQASLR--ENKEHFCGAAIINARWLVSAAHCFNEFQDPTKWVAYVGA-TYLSGSEASTVRAQVVQIVKHPLYNADTADFDVAVLELTSPLPFGRHIQPVCLPAATHIFPPSKKCLISGWGYLKEDFLVKPEVLQKATVE 351 HSP 5 Score: 92.4337 bits (228), Expect = 1.046e-19 Identity = 57/156 (36.54%), Postives = 83/156 (53.21%), Query Frame = 2
Query: 989 SISRIVGGVNAAPGDLPWQAAM--RRTDSGKPFCGATLISKKWAISAAHCQIRAG---QQIVLGAHNFRLGAEASRQIRTVRRAINHQGYNDRTMTNDIALVELSQEVEFDEFVKPACVLDSSKQLAAETPVVISGWGTTASGGSQPNILQEAEVK 1441
+++RIVGG A G+ PWQ ++ RR + CGA L++++W +SAAHC G Q F GAE Q+ V R H YN T+ D+AL+EL+ V V+P C+ + + + T VI+GWG+ GGS LQ+A V+
Sbjct: 823 ALTRIVGGSAAGRGEWPWQVSLWLRRREH---RCGAVLVAERWLLSAAHCFDVYGDPKQWAAFLGTPFLSGAEG--QLERVARIYKHPFYNLYTLDYDVALLELAGPVRRSRLVRPICLPEPAPRPPDGTRCVITGWGSVREGGSMARQLQKAAVR 973 The following BLAST results are available for this feature:
BLAST of TCONS_00065597 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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