TCONS_00067130 (transcript) - C. hemisphaerica

Overview
NameTCONS_00067130
Unique NameTCONS_00067130
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length919

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00067130 ID=TCONS_00067130|Name=TCONS_00067130|organism=Clytia hemisphaerica|type=transcript|length=919bp
ctaaaaatgacGACCGAGCTTTCTTTTTTCACGACTTGTGTATTTTTCAC
CTTTTCCGTTCGGCTGtaataattaaaaacatttgaaaattgtcCCTCAA
TACAGAACacataaaaatgaaatcttAACAACTTGGATTTCCAGTAAAAT
TGATGTGCAGTGGTTGGTTGACacaaatattacaaaaaatatgTCTCGGA
GAGAGCTGAAAAAGGAAATTGAATACTTGAAAACAGTCTTTCCGAAGACT
CAACATGTTCTACGGATCTTGTCTGCAAGTACAGATGATCTGACTTGCTC
ATTTACCGACAACTCTGGCAAGAAGCACACAATTATATGTAGCATTACAG
ATAGCTATCCCGATTTTCCTCCAATATGGTGCTCAGAATCTGAGGCGCCA
CAACTTGTCGAAatcgttgaaaaaattaatgcaatcacATCAAGCAATCA
TTTATTATTTACAATGACTAAAACACTGGCTAttgaactttttacaatga
tcaaAGTTGAAGTACCTACAAGTGTACTAGAAGCTACTTTAGTCTCTGAT
GAGAAGGGAGTAGATGAAGATTACGAGATGGATGAAGTAGACTGTGATGA
TGAagaggaaaatgaaattgaagatgaagatgatgacGATGACCCCATTG
ACCAAGAGTGTTTCGATTTCAGGGAAGACCCTGTCAAtGACGAATCAAAG
GAGAAAGATGAAGTTGGGGAAGCCAATTATTCACAACTTCAAAAGTTACG
AGGCGTCCAAAGGGAAGAATATCTATCGGGCAAAGTAAGCGGCTCAGTAC
AAGCAACAGATCGATTgatgaaagaattaaaaaatatttataagtCAGAT
AGCTTCAAAAAAAATTTATATACACTGGAGTTAAAAGAAGAAAGTAATTT
ATATGACTGGTTTGTAAAA
Run BLAST on NCBI

transcript from alignment at scaffold_464:37627..50658+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00067130 ID=TCONS_00067130|Name=TCONS_00067130|organism=Clytia hemisphaerica|type=transcript|length=13032bp|location=Sequence derived from alignment at scaffold_464:37627..50658+ (Clytia hemisphaerica)
ctaaaaatgacGACCGAGCTTTCTTTTTTCACGACTTGTGTATTTTTCAC
CTTTTCCGTTCGGCTGGTAAGTTTTATGTTCCTATCTTTAGTTTTTTACT
GTGTTTGGATTAAGCCTTTTTTTAGATTAGCAATCAAAACAGACAGCTTG
GTAAAATCTGTTTTCATTTTGAGAAATACCTCGCAGAAGTCCAAGTGTGA
TATCGAtgatgaattgaattgaattgaattgaattgaattgaatatcagt
tagggaaaccatccaggatcctgccattctataagccagaaaaaactaaa
tgacacttgtaaacttaagtttcttactattttccatcaaaaacaaccaa
aaacatttgctacttcccaaagctggagaccaaaacaaattatcttccaa
gattatggcgcctttttagatctattgttatggccatctaaaatggtgga
aagagttgcggaaagacaggggcgcccgctagcttcgagggtggcaacgc
caaaacgcccaatacgatcttccaacaaaaggcgagttatttaccgcgcg
agttacgtcatacactccaccgcagcaCACAACAAacggtgtttcagtga
atatcaataattataagaaaatcttatgtgcttaaattcagtaaactttg
agttcttcattgaagatttagaagataagaagataaaaaatgcgctggat
aattttcattgtaacagtttggtcaatcatagctgaaagtttgaaaaagt
ttttccgacgctaaaaaaaatttcagccaattaaaagcacaatgtgctta
tatttactgtgtttgctacatcgtctaggctaaaaaaagtgcgaaaatac
acgaacgtcattttttaatgagtgttgttatgattttttagatcgcGGTT
TACAGGAACTCgtcaaatgttcctaactgaatatattttcgctgcaacac
agcaggataaccccttacaaaaaaaaaaatagatttctctaatacaatgg
ggaacctagaagaaactgaaaaattattacagaactaaagaaaaaatgaa
taaacgattatcataatattaatagtgacaacaaataatgaatataagaa
atatttttttattttcattttatgacaatttctttgagaagttttattta
taaagttcttcctgttacaccacccaccccctcccaccctgggaaaacac
actaagttCACGCACACACAATACACGCACACATACACANNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNAATCAGtgtcaggatgatttattagtaactcattccattg
ttttgacgaaagacgagagaaagagttaagtccaaaatttgtggttttga
ccgttgaaagttttaggggacccgtccatattcatttgacaacgcaaaac
atcaaattgacgttatcctcttcaaactgagcaaaaaaatgtattatatc
aaagtctcaacttttttagatcaaaagttatagacgattttatggtcaaa
aattgattgaaaacagggaatttcNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNgcccataacttttgatctagaaaagttgag
actttgatataatacatttttttgctcagtttgaagagctctatcacgtg
gtataggtcttttttgatttgaagacccccccaaaatcatgaattttcag
ggcttacaattttgcctaaaaacccaaaaaatcgcaaaattacgtaaaaa
ctgcgggttttcaagcttggtaacattcaaattccgaatcagcaccctca
aattgaccaagaaagatatcaaaagtttattcaccGACATTTTNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCGGTTA
GTGAGGTAAGATCGGAACCAGTCGTTAACAATGCCTCTGACTCCGTAGTG
ATCGagtttttcaagtaaaatttcGTGATCAACTGTGTCGAAAACCTTTT
GTAGATCGACAAATACACCACAGGCAAACCTACCATTGTCAAGATAGTTT
CGGATACGTTCGACAATATTAATGAGTGTATGCTCAGGTAGAGTGAGCct
tacgaaaaccaaattgtcgAGAGTAGATTTGATTATGGTTTTCAAGAAAG
TCAGAGAGACGTGAATACATCActttctcagaaaaattttcaatgttgga
taaaagtgaaattggcCTATAATTAGAGACTTCAAGGGGAGAACCTTTGT
GTTTGAAGACAGGCACAACTTTAGATATTTTGAGAGTAGAGGGAAAAATA
CCACTGAGAAAGGAGTAGTTTATCAGCGCCAATATTGGCACAGAAATGAG
AGTCCTTGAGTCCTCAGTTATTCTTGTTGGTAAAAGGATCTGTGGAAGTA
TAAGATTAGAATCGAGGATATCCATGAAGGACATTATTTCTGAGTCATCC
TCGCATTTTAAAAGATTAAGATTGAAGTCTCCAAGAAGGAGGAGTTGCTT
TTTCTCAGAAGAAATTTTACTTAGCAAAGGTTTTAGAAAATCTTGATTGA
AGCCAACCATTTTTGGATGGCGATATATAGTACTAACAATGATATTGGTA
CTGTTTGGTAGGATAATTTCAGCAAAGCATGATTCAAGACTACATGAAGA
ATAGCAAACTTGATcgtgttcaaaaaagaatgacataattcaactttttt
agtgATGATTTCAAAAAGCCTATATAATGTGATATTTTGTGGCTacagtt
aaaaaaatttattcccacgtcccaaaatgacaaaaatttcttttgcattT
GAAACGAAATTTCTAGTGATCTTCAGGGGCTAGTAATTAGCCTTTAAAGT
GTGTGAAAGATTGTGGCTAATTTTTTGAGTGGCTAATTCTACCAACTAAT
TTCAAAAAGGTGTAGCAACTTCAATTTAAAAGATCAGTCACCCAAATTTT
GCACAGGTTACattgaataataaaattttgagattatGTGAAAAGATGTG
GGCTATTGATCCTTGAAAGTGAAATAATGTGGTTAATAGACTTAAAATGC
ACCCAGAGACAAaagtattgaataaaaaagtctaATCGtggaatttgaaa
gttttttgctgGAGATGATACTTATTGaatggttttgttttcattttctg
agGATACAACATCAGAAATGTGAATTTAAGTGGCTAAATACTCCTTGCAA
TTGTGATGTTTGACTTGAGGAAAAACGTACTGACTTTATTCACCATGTAA
GAAAGCTGTAGTTATGAAATTTTGGGATATTGTGCTAAATATGTGGCTAA
TTCCATATAAATACTTTTTGTAACACTTCCTGTAtgattttgtgttaaaa
tgtgTGGCTATTTGCATACTTAGTAACTagcagtttttttcattttaagc
ctaatttatAGATTTCCCCTGTCATGTTTTATTGCCACAATTATTCACat
atcaattttaaagaaaggTATACAAGGTATCAAAAGAAAGCCAATGGAAT
TTTCCAAAGTTTAGACAAGGTTATTCTTTCACTCACGACGTGAAAAAATG
TGGGTAGCCTTTTTAATAATCCGGAAATTTTAGTAAGTTTTTTTTAGCCA
CGTAGAATCACAGGGCAACTATTAGTTGATACTTTTGAATTcagaaagtg
aaaatttgatctTCAAGCTATAGTCTCAAACAATTCAGGTCTTTGGAATT
CTTTTGTGAATGGGTGTGGCTACCATTTAAAATAAgggccttttttcaaa
aaagtgtgaaTATTAGCCGCATGATTTCACAAATTAGTAGgtaaaatact
tcaaatatgTTCTATTTTTTACTAGTTTTTCAAGAACACCAGATTCATTA
TTTTCATCACTAGTATTTATTTGCTATATTGGTTTTTTaactattgaaaa
aatatcaaaacagcGAGTTCAAGCcacaatttttcacatttatcacttga
aattctttcacaTAAGTATATCTTAGAAAAGTTCAATCTGTGATCTTCAA
CTTTGAACCAGTTCCAAATGTGGATATTCAATAAGTGCTTGATTGAGgct
atttcaaaaaaagatagaaaaagggTAATATTAGCCTCAAAACTgcacat
tttgataaaaaaaaattccagtgaATTCCTAGAGTCCTAATCCACAATCC
TGTATTTTTCCCTCTTTCGTGAAACATTTGCTGAGAAGTTACACGACATT
atccaaaatcaacaaaaattgcatttttccaatgtgtcattcttttttga
acagaatCACTTGGTCTAGGTCTGTCATAAGTTTGTAAGAGAAAGAGTGT
GAAATATATAAGGCCACTCCACCTTTAGAAGATTCAGTTggtgtaaaaaa
ttttttcgtaACCTGGTATAGCAAAGTCCTCTTTTTTTTCAAGAGGACTT
TCTGTTTCTGTTTCTGTTTGCGATGACGCAAgcaattaacaaaataaaaa
aaagaaagatcaaagagattttctttaaggcggcaatcacaaatatcttc
gtttcgtgtcgcccgaccgactcctGAAAATTCCAGCAAACTAACTGGAA
CGTGCCGCCTTCATTCAGCGTCTTAGAACATCTTGcgctaatgtttttaa
ctttttattttattttatcctttatgtttaaaatcacgaaaatgtacgta
atgtattatgtgataattcaatagaactagaactagaactagaactagaa
ctagaactagaactagaactagaactagaactagaacagaacagatattt
tgaagtccccttcctttcggtggatgctttcgtcAAAAAAACAGACAGCT
GTACATGTTAGGCTTCACTTAGCTGTACagttaaggcttcactttttctt
gcctgagaaaggttagagattgaactatagcccttcgggctttaaactca
atggttagcCTGGTCTCCcgccctagagcgatttgcattctccataTGAG
TATTCTGGAGCAAGATATCCACGATATAATTACAATAGTGCTCActgcag
tgtagacctaaagctctaaaacagcatctaataacatgaaaaccagaata
tgattcttcaatgggaatcaaaactataaagtgcacttacaaacatcaat
ttgtcagatctaacaaaattaataactgcactgtcatcattgacaataaa
acgattttctgtcaaagccttgtaaacattccaacaacttccatcgaaat
gatctatcacagctcagtccaCTATTTTTAGCGCgatccgaggattgagc
cgagaatcGCTActcgaactcctgcgcgggtgaaaaacttcaatctgtca
atcattttctcaagcgaagagtacgcgaagcgattctagctttacgatag
tgccgcgggtcatcaatggatagtaattaatcaaaccaatcgaactgtAT
TTTTAGtcgaactttgtcaaacttaatcgaactttgttggcCGAATAATG
TTTGACTAAGTTTGGTTGTCGAATTTAATGGAATACtctcacaaatttct
caaaatacaaagttcgattactgaaatcgaactcaatcgaacttttttta
aagagaccttgacagttcgattagttcgattacatTAATCAAACTAAATC
GAACAAATCGAActaaaatcaaactttgtcaagttaaatcgaacaaaaat
ttgagaaaacccgAGCAACTGAAGGCCGCTTCACTTGCGCGAaattcgat
cgcactttttgccgGCCTTTGACAACACTTttaggaactttgaagcaccc
ctgCTGGTGCAGACGTGTATCCTCACaccccctgaccagtgggcaccgat
CAAACTCCCCGGAACCCTGGCCGGGACCTTCAGGGGCCGGCCACGGTGGT
atccaaaggaggtcattttttccaattttgaccaatttcattttgaacag
ttcggtaatcgaactgttcgattaattacgtctggattAATGGCTGAACA
ATCATCCTCAaagactatatatatataagtATTTTATTTGACCAAAGTCC
ATCTTCTGGGGACAAATACAATTTTGTAACCatgtttaaatgttttttta
gaaCGTGTTAAAAATCACTTACTCCGGAAGCATTGGAAGAGCTCCAGAAC
TTTCCGGAGAggaaaatagtgttttttagcTGCTCCGGAAAACTCCGGAa
gtttccggagcgccgggagggtcctgtTGCGAAGCGTTCCGGATTCCACC
TCAATTttcaagttgctagcaaaataagagccACTCTGATAAAACCCCAA
AAGAGACAGGGTCTTAAGTCTTATAATACCCCAAACACAACACACAAagc
acggcggcacaacacacCCACCGCCTGGCACAACGCTCTTCTTTCCTTCT
AGTTCTGTAAGTGGTGCCTGGGTAAATTGTCCCCTTGCGAAAAAGAAATT
AAGCCTCTGGTGTTTAGCTGCAAAAGTTTCCAATTTACACTTACAGAGAA
ACCATAATCAAGTCAAAAGCTTTATGTTCAGTACTAACTACTTTTTtctc
catttaacagcaaaaaaaaatttaaaaccaaaaaaacactGTTTAGATAC
GCACCGCGTAtcaatttgataattttcagctTCTTAAAGTCCGTGtctcg
gcttccggtaatttttcctgttcactgctagggtacaccattttaaaaca
gcatttttcgcagtcctagctacctaACCGAGAAAATTTTCGTGGCTTTA
AGCCAAATccttcaaggtcattttgacaaaatcatcggtttgaagatgtg
atttatatagcaaagtttcgcttgggatagaagttaaaggtacgtgcaca
caatgctcataaattcgcttcgcaaaaaaaaagtgttaaaaataccaggt
acctggaagtattcttaaagtattcttattcttaaatttagggggtacct
ggtgtttgggggtacctgcaTTTTCACAAGTGGGCGCGGGGGCTGTTATT
TTTGTATGAAGTCATGGTGGCCAGCAACCCTTGAATtccttgaaacaccc
ttgatttttttcctgctcttaaaaatttccttcaaaCCCTTGAAGAATCA
ATATTATTTTGGGGACCCTTGATGTGCAAGATTTATACCCTTGACACCCT
TGAAATGCCAAATTTTGCagccattttcagccattttaactTTCGgaaat
accgtgagtggtccttaatctaaaaaaaaaccttttgctgtgacgcaatg
aagataccaaagtgtcaattaaactgagagatttgatacactgaaccaat
tgaaccaaataacaataattgcttcattatacaaaacataattttttatt
acaaaattgttataaacgttttaaaaacttttttaatcacattaattgac
atcttgtcattatagtcatcttgttagatgttttgtttcgagagttctta
caacagtttattgttcaacttggagagcgAATGTTTATAGAcattttcat
agcagttatttggggagtcagatttaggcagggctgtcagatttaggact
cCACGCTCATTCTTAATAAATGGTTTACCCTTTAATCCGTTAGCTAAGTG
CCACTGGAATTACATGAGATCGGCAGGTCTGGGTGATAGAATGGGTGGtt
gtaaaattatcaattatcagcCAATCTAAAGAActgaaaatcaaagattt
tctctgTCGGACCCAACTGCCCTCCTTTACCACAACGATAAAGAAAGTGT
CTGTTGAAGAATGTTATTAAGGTTATGTTTAAAATCAAGGGGATTGAAAA
GACTGAtttgtttgaaagattttaaggtttttatgattttgttaaaAGAA
AACGTCTGGGGTATTTTATTGTCTGGTAGATTTCCTTGAAATCCTTTAAA
GCTAGCAAAGATCAACTAAAAACCCTAGAAACTCTTGAAagtttgtggta
aaaaacttttgaaaccctggaaaattagtcaagaatgaaaaagaaaccct
tgaatttgttgaaaaagaagtGATGTTCACCATGGAAgtaggtaccatca
taggtaaaagatggctcaagcagatttttgcaaaaaattttgttgcctca
aaaaacgcatgtttaccTACAAGAATCActtttaataagcatacatcaat
gttcttagtcaaattattcaatttttttatgagatagatgttttatttgc
tcacgagggcttacttttaaagaatatatgtgtttggatatgaaattttg
tttgcttggcgtgtttttatagaaaaactggccaaattcgatattttttt
ataagcacattatcaattactcaggtattagcttttctcgaNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNctcgagattggctcttt
cattctttatgattttttgcacaaagatgcataactataaaccctcgaat
gtgatggagctcgatttttggaaaaaaaattttgggttaaatttcagcta
aaaaacggcaacaaaaaaaagggttttttggactttgtgaaatattggat
cattgactttttgcatgaaagtaggtaaaagatggctcaagctgattttt
gtaaaaaaataattttttagctcaaaaaacgcatgtttatctgtaagaat
cactattaataagcatacatcaatgttcttaaaattaccaaattttttga
tgagatatgtttttttgctcacgaagtcttgaatatgaaagaatatttaa
aaagcatgaaattttgctttctaaacgtttgttttataagaaacaaacaa
ctaattttgatagatcgtcactatttgcgttatgaatgattgtttaatgg
tcacgctcacgtagatatcaattataatatgtgttaaatgcataaccagg
taggtccataaaagtatcacttgttccaATTCTTTTTTAACTCGCTTTTT
TATTAAGTAAAGCAAAAATGAATTAAGGTGCTCTAAAAATATAGGCACGT
GAAAATATACGAAGGCGCAAATTCTCAAGGTCAAGAACCTCATGTAGAAT
ATGAAACAGCAAAATTATAAAtaaagctatttttgtaataCTTTGATGGG
ATGAAATTTtttggggattaaatttcggaCATTTGCAAATTTTGGTGTCA
TTTGCATCGGAATAACTTTAGAggcaaattcaaaaaagttttagcTGCGA
AAAAAATTCTTACAGTAAATGGACTTTTCAATGAATGGAAAACTCCTTCA
TGAAAATTATCGTTTTTTCAACCATTGGCGAAAATAAgttccagaaaata
tttgaaaacgcGTCACCCACAGAATTCCCGCAAATTTATCTAAATTTTGC
AGACAGGTTGGTTCATCAGCAAATTTATTTCTTGTGAAAATTCATCACGA
TATCAAGGtacattgaaaatttatatttaacCCACCAGGAGAGTATCTTT
CTccactctttttcttttacagtaataattaaaaacatttgaaaattgtc
CCTCAATACAGAACacataaaaatgaaatcttAACAACTTGGATTTCCAG
TAAAATTGATGTGCAGTGGTTGGTTGACacaaatattacaaaaaatatgT
CTCGGAGAGAGCTGAAAAAGGAAATTGAATACTTGAAAACAGTCTTTCCG
AAGACTCAACATGTTCTACGGATCTTGTCTGCAAGTACAGATGATCTGAC
TTGCTCATTTACCGACAACTCTGGCAAGAAGCACACAATTATATGTAGCA
TTACAGTaagttatgaaatatttcaaataaaactATTGTTCTCTGTAAGC
ACTCTGTATAATAAAGTACTGTGCCGGATACTCCGTGTTCTGAAGAGGCA
AATTATATCAGGAAGAATTATCTATCAACTTGTGCATTAGATCAaacaaa
aattggcttttgaaTTATAAACTTGTTGTTTGTTTGTTCTctgatgtttt
ctttttttgttgtggTATAATTTGACTTTTGCTAAAAAAGGCTACGCATT
ATAATAACGTGATTCTTCATATACTATTGTTTTAAAACAGTTTGAAAATC
CTCTATCGTCTCCTCTTCCAGGATAGCTATCCCGATTTTCCTCCAATATG
GTGCTCAGAATCTGAGGCGCCACAACTTGTCGAAatcgttgaaaaaatta
atgcaatcacATCAAGCAATCATTTATTATTTACAATGACTAAAACACTG
GCTAttgaactttttacaatgatcaaAGTTGAAGTACCTACAAGTGTACT
AGAAGCTACTTTAGTCTCTGATGAGAAGGTATTTACTTTACCTGGATTTC
TGGAAATGCTCATCTCCCttaattttgctcaaaaaagtgGTGAATCAGGA
AATATCAAAAAgtgttcatttttgttttttttgcttattagaGGGTCAAA
TATCTCAGGCCTCAAACAAAGCTTGATGTTCGATAGTTTGGAGAGATTAT
TGCAGCTTTTTATACTTCAAATAGTATTCAACCttctttttattaaaata
aaattgtgacATTTCTCCTGACCTTTCCGTCTCTCCCTCCCACCttttaa
gatgaaaaattgTACTGAAAAACTTCCATTTATAAacggaaagaaaattt
cagtttttttctctttactCAGGGAGTAGATGAAGATTACGAGATGGATG
AAGTAGACTGTGATGATGAagaggaaaatgaaattgaagatgaagatgat
gacGATGACCCCATTGACCAAGAGTGTTTCGATTTCAGGGAAGACCCTGT
CAAGTGAGTGTTTTGAAAGTATCTTATCTTCACCTTTCCAAGGCTGTTTC
GTTTCTTTTGAGATTCATTCCTCGTTCTAAAAAGGACATCATAAAACGTA
TCTTCAACCATGTGCTTCACCCAgtattttttcagcaaaaacttTATCCC
CCTTCTCTCGCTGCGCTGCAAGCACAATTTGTTTGGAAACTGTTTTGTTa
tttctgctttgtcagcattaTTGACTTTCTATATCATTAAAAAGAAtatc
tatttatttttctttactttagtGACGAATCAAAGGAGAAAGATGAAGTT
GGGGAAGCCAATTATTCACAACTTCAAAAGTTACGAGGCGTCCAAAGGGA
AGAATATCTATCGGTAAGGGGTCTTAAACTGTTCCTAAAATTTTCTTATC
atatatacacgttttctttaagaacgattttataagaacataatgttcta
aaaatgaaaaaaaaaacctgaaaCCAAAGAAACCTAAGTTtttaaattcc
tttttatagTAAATTTGTAATAAGCATatgaagaacattttaagcctgaa
aaaatcaaaaaacaataagaacagccaagctccagccaaaattaattgag
gcttacaaatttgattttctctCTACCTATCCTTCAAAAACATACATGAC
ATCAATAACTGATTCTATATTATATTTTCAGGGCAAAGTAAGCGGCTCAG
TACAAGCAACAGATCGATTgatgaaagaattaaaaaatatttataagtCA
GATAGCTTCAAAAAAAGTAAGTGCTCCAATATTGATGACCAAAGTtcttt
ggacctacctgaaaaGAAGTCCTTTGAATTAAACTTTTCACCTTATCACG
AATACAGTATTTAAAAAGCAAttataaaaatggtagacagcattgtattt
tttttcaagatatttcgaTTTGAAAGTTAAAGTATTAGACATTATTTCAA
CGTCGGGTGTAGTGTGGTGCTTTTTCGGGATTATAGATAtgggattttaa
gattttatcatttttgtctATTTCAGATTTATATACACTGGAGTTAAAAG
AAGAAAGTAATTTATATGACTGGTTTGTAAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041945XLOC_041945Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067130-exon-scaffold_464-1491911889:37627..37692TCONS_00067130-exon-scaffold_464-1491911889:37627..37692Clytia hemisphaericaexon
TCONS_00067130-exon-scaffold_464-1510915933:37627..37692TCONS_00067130-exon-scaffold_464-1510915933:37627..37692Clytia hemisphaericaexon
TCONS_00067130-exon-scaffold_464-1575043694:37627..37692TCONS_00067130-exon-scaffold_464-1575043694:37627..37692Clytia hemisphaericaexon
TCONS_00067130-exon-scaffold_464-1491911889:48299..48581TCONS_00067130-exon-scaffold_464-1491911889:48299..48581Clytia hemisphaericaexon
TCONS_00067130-exon-scaffold_464-1510915933:48299..48581TCONS_00067130-exon-scaffold_464-1510915933:48299..48581Clytia hemisphaericaexon
TCONS_00067130-exon-scaffold_464-1575043694:48299..48581TCONS_00067130-exon-scaffold_464-1575043694:48299..48581Clytia hemisphaericaexon
TCONS_00067130-exon-scaffold_464-1491911889:48898..49104TCONS_00067130-exon-scaffold_464-1491911889:48898..49104Clytia hemisphaericaexon
TCONS_00067130-exon-scaffold_464-1510915933:48898..49104TCONS_00067130-exon-scaffold_464-1510915933:48898..49104Clytia hemisphaericaexon
TCONS_00067130-exon-scaffold_464-1575043694:48898..49104TCONS_00067130-exon-scaffold_464-1575043694:48898..49104Clytia hemisphaericaexon
TCONS_00067130-exon-scaffold_464-1491911889:49449..49579TCONS_00067130-exon-scaffold_464-1491911889:49449..49579Clytia hemisphaericaexon
TCONS_00067130-exon-scaffold_464-1510915933:49449..49579TCONS_00067130-exon-scaffold_464-1510915933:49449..49579Clytia hemisphaericaexon
TCONS_00067130-exon-scaffold_464-1575043694:49449..49579TCONS_00067130-exon-scaffold_464-1575043694:49449..49579Clytia hemisphaericaexon
TCONS_00067130-exon-scaffold_464-1491911889:49849..49939TCONS_00067130-exon-scaffold_464-1491911889:49849..49939Clytia hemisphaericaexon
TCONS_00067130-exon-scaffold_464-1510915933:49849..49939TCONS_00067130-exon-scaffold_464-1510915933:49849..49939Clytia hemisphaericaexon
TCONS_00067130-exon-scaffold_464-1575043694:49849..49939TCONS_00067130-exon-scaffold_464-1575043694:49849..49939Clytia hemisphaericaexon
TCONS_00067130-exon-scaffold_464-1491911889:50258..50342TCONS_00067130-exon-scaffold_464-1491911889:50258..50342Clytia hemisphaericaexon
TCONS_00067130-exon-scaffold_464-1510915933:50258..50342TCONS_00067130-exon-scaffold_464-1510915933:50258..50342Clytia hemisphaericaexon
TCONS_00067130-exon-scaffold_464-1575043694:50258..50342TCONS_00067130-exon-scaffold_464-1575043694:50258..50342Clytia hemisphaericaexon
TCONS_00067130-exon-scaffold_464-1491911889:50603..50658TCONS_00067130-exon-scaffold_464-1491911889:50603..50658Clytia hemisphaericaexon
TCONS_00067130-exon-scaffold_464-1510915933:50603..50658TCONS_00067130-exon-scaffold_464-1510915933:50603..50658Clytia hemisphaericaexon
TCONS_00067130-exon-scaffold_464-1575043694:50603..50658TCONS_00067130-exon-scaffold_464-1575043694:50603..50658Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_464supercontigscaffold_464:37627..50658 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
36.3821	29.6325	26.9292	31.0618	3.2089	10.7735	4.60364	2.96762	7.81111	4.81566	11.7462	2.41463	4.07224	3.54655	3.1785	3.19151	5.79875	3.9096	1.77816	1.8388	0.0772744	6.92789	6.17804	3.9303	7.53659	9.4266	2.57347	3.04441	10.8661	10.0263
Blast
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BLAST of TCONS_00067130 vs. Swiss-Prot (Human)
Match: UB2Q2 (Ubiquitin-conjugating enzyme E2 Q2 OS=Homo sapiens GN=UBE2Q2 PE=1 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 7.831e-34
Identity = 90/252 (35.71%), Postives = 145/252 (57.54%), Query Frame = 2 
Query:  191 MSRRELKKEIEYLKTVFPKTQHVLRILSASTDDLTCSF-TDNSGKKH------TIICSITDSYPDFPPIWCSESEAPQLVEIVEKINAITSSNHLLFTMTKTLAIELFTMIKV--EVPTSVLEATLVSDEKGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFREDPVNDESKEKDEVGEANYSQLQKLRGVQREEYLSGKVSGSVQATDRLMKELKNIYKSDSFKKNLYTLELKEESNLYDWFVK 919
            MS   LK E+++L ++F K     RI+S   D+L C F     G  H      T+ C+IT+SYP   PIW  +SE P L  ++E++   T +N+LL    K L  EL ++  +   +   +L+  L + + G  E+   +E + ++E   +IED D  +           E+P++ +  E + + + N + L+K+R  QR+++L+G VSGSVQA+DRLMKEL++IY+S S+K  +Y++EL  +S LYDW VK
Sbjct:    1 MSVSGLKAELKFLASIFDKNHERFRIVSWKLDELHCQFLVPQQGSPHSLPPPLTLHCNITESYPSSSPIWFVDSEDPNLTSVLERLED-TKNNNLLRQQLKWLICELCSLYNLPKHLDVEMLDQPLPTGQNGTTEEVTSEEEEEEEEMAEDIEDLDHYEMK--------EEEPISGKKSEDEGIEKENLAILEKIRKTQRQDHLNGAVSGSVQASDRLMKELRDIYRSQSYKTGIYSVELINDS-LYDWHVK 242
The following BLAST results are available for this feature:
BLAST of TCONS_00067130 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
UB2Q27.831e-3435.71Ubiquitin-conjugating enzyme E2 Q2 OS=Homo sapiens... [more]
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