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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00067921 ID=TCONS_00067921|Name=TCONS_00067921|organism=Clytia hemisphaerica|type=transcript|length=2187bp
ATATGATTGTGGAAAAACGTTTGGTTCTTTTTCTAATCCAATTCAACTAT
TTGGTTTTGAGAGGACATTACGTTGAACCTTCAAGCAATTATGAAAGTCG
GCAAAAACTAGTGACAACATCACCAACCAATGACTTGACCACCTTCCACC
AAGTGACAACAAAACATTCAACAGCACCTTCGGTAACATACCATTCAACA
CCAATCATAACATCACAAACTAGCCTGCCATCTTCGTCGACTGATTTGAT
CTATACGGAATCGAGCTTTCAATCCTCGTTGTTATCTTCAATACAACAAA
CTTCTATAATCTTAGATTCACTTCAGTCAAGCCAATCATCAACATCTCCG
ACAACAAGTCAACCATTAATATCTCCGACAACAAGCCAACCGTCAGTATC
TGCGACATCAAGTCAGACGTCGATATTTTCAACATCAACATCTCTGAGAT
CAATATCTTTAACATCAAGTCAGGCGTCGATAACTTCAACATCAAATCAA
ACGTCGATATCTGCAATATCAAGTCAGACGTCAATATCTCCGCCAGCATT
ATCTCCGGCAATAAGTCAGACGTCGATATTTCCAACATCAGGTCAAACAT
TGACATCTTTAACATCAAGTCAGACGTCGATGACTTCAACATCAAGTCAA
ATGTCGATATCTTCGACATCAAGTCAGACATCAATATCTTTAACATCAAG
TCGAAAATTCACATATCCGACATCATTATCTCTGTTATCAAGTCAGACAT
CAATATCTTCGACGTTGAGTCAGATGTCAATATTTCCGACATCAAGTCAA
ACATCAACATCTCCGACATCAAGTCAGATGTCGATATCACAGATATCAAG
TCAGACATCAATATCTCCGACATCAAGTCAGATATCAATATCTCCGACAT
CAAATCAAACATCGATATCTGCGACGTCAAGTCAGACGTCAATATCTCCA
CCAGCATTATCTCCGGCAACAAGTCAGACATCAATATCTCCGACATCAAG
TCAGAAACTCACATATCCAACATCATTATCTCTGTTATCAAGTCAGACAT
CAATATCTTCGACGTTGAGTCAGATGTCAATATTTCCGACATCAAGTCAA
ACATCAACATCTCCGACATCAAGTCAGATGTCGATATCACAGATATCAAG
TCAGACATCAATATCTCCGACATCAAGTCAGATATCAATATCTCCGACAT
CAAATCAAACATCGATATCTGCGACGTCAAGTCAGACGTCAATATCTCCA
CCAGCATTATCTCCGGCAACAAGTCAGACATCAATATCTCCGACATCAAG
TCAGAAACTCACATATCCAACATCATTATCTCTGTTATCAAGTCAGACAT
CAATATCTTCGACGTTGAGTCAGATGTCAATATTTCCGACATCAAGTCAA
ACATCAACATCTCCGACATCAAGTCAGATGTCGATATNCATCTTCGACAT
CAAGTCAGATGTCGATATCACTGTCGATATCACAGATATCAAGTCAGACA
TCAATATCTCCAACATCAAGTCAGACGTCAATATCTCCGACATCAAGTCA
GACATCAATATCTTCGACATCAAGTCAGATGTCAATATCTCCAACATCAA
GTCAGACATCAATATCTTCGACATCAAGTCAGACATCAATATCTTCGACA
TCAAGTCAGCTGTGGATATCACAGATATCAAGTCAGACATCAATATCTCC
GACATCAAGTCAGACGTCAATATTTCCGACATCAAGTCAGACATCAATAC
CTCCGATATCAAATCAGATGTCAATATCTCCAACTTCAAGTCAGACATCA
ATATCTTCGACATCAAGTCAGACATCAACATCTTCGACATCAAGTCATAT
GTCGATATCACAGATATCAAGTCAGACATCAATATCTTCGACATCAAGTC
AGACGTCGATATCTCCAACATCAAGTCAGACATCAATTTCTCCGACATCA
ATTCAGGCATCAATATTTTCGACATCAAGTCAGATGTCAATTCAGGCATC
AATATCTTCGACATCAAGTCAGATGTCAATATCTCTAACATCAAGTCAGA
CATCAATATCTTCGACATCAAGTCAGACGTCAATATCTCCGACATCAAGT
CAGACATCAATATCTTCGACATCAAGTCAGATGTCGATATCACAGATATC
AAGTCAGACATCAATATCTCCGACATCAAGTCAGACG Run BLAST on NCBI protein sequence of TCONS_00067921-protein >TCONS_00067921-protein ID=TCONS_00067921-protein|Name=TCONS_00067921-protein|organism=Clytia hemisphaerica|type=polypeptide|length=728bp
MIVEKRLVLFLIQFNYLVLRGHYVEPSSNYESRQKLVTTSPTNDLTTFHQ
VTTKHSTAPSVTYHSTPIITSQTSLPSSSTDLIYTESSFQSSLLSSIQQT
SIILDSLQSSQSSTSPTTSQPLISPTTSQPSVSATSSQTSIFSTSTSLRS
ISLTSSQASITSTSNQTSISAISSQTSISPPALSPAISQTSIFPTSGQTL
TSLTSSQTSMTSTSSQMSISSTSSQTSISLTSSRKFTYPTSLSLLSSQTS
ISSTLSQMSIFPTSSQTSTSPTSSQMSISQISSQTSISPTSSQISISPTS
NQTSISATSSQTSISPPALSPATSQTSISPTSSQKLTYPTSLSLLSSQTS
ISSTLSQMSIFPTSSQTSTSPTSSQMSISQISSQTSISPTSSQISISPTS
NQTSISATSSQTSISPPALSPATSQTSISPTSSQKLTYPTSLSLLSSQTS
ISSTLSQMSIFPTSSQTSTSPTSSQMSIXIFDIKSDVDITVDITDIKSDI
NISNIKSDVNISDIKSDINIFDIKSDVNISNIKSDINIFDIKSDINIFDI
KSAVDITDIKSDINISDIKSDVNISDIKSDINTSDIKSDVNISNFKSDIN
IFDIKSDINIFDIKSYVDITDIKSDINIFDIKSDVDISNIKSDINFSDIN
SGINIFDIKSDVNSGINIFDIKSDVNISNIKSDINIFDIKSDVNISDIKS
DINIFDIKSDVDITDIKSDINISDIKSD Run BLAST on NCBI transcript from alignment at scaffold_477:424578..427541- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00067921 ID=TCONS_00067921|Name=TCONS_00067921|organism=Clytia hemisphaerica|type=transcript|length=2964bp|location=Sequence derived from alignment at scaffold_477:424578..427541- (Clytia hemisphaerica)
ATATGATTGTGGAAAAACGTTTGGTTCTTTTTCTAATCCAATTCAACTAT
TTGGTTTTGAGAGGTAAGAAAATTTACTTTCAATACTTTATTCAGCTTTT
TTATACCATAACTTTCAGGTGGCAAATAAACGGGGGGAGATATCGTACAT
ACTTGTTCTCCAGTCGGTAGAGATGGACCACGGCCACTTTGACTGCCTGA
AAACGCCGTGCGGCCCGGCAATTGTCTGGGGGGGACAATTAGACAATAAG
TCAATAACCGGGAGGATAAAAATTGTACCTTATAGACTAAAACTTGGCTA
TTTAGAGAGTGATAGAGGACTCTTGTTTTGACAGCTGAAATTTCCAAAAA
TTAATAAAAGGGGGGTGGTCTTAATGGACAAAAAATCGGCAAATCAACAA
GCAAGGGTCGTTCATTAGGCACCTAGAAGTAACAATCGGTAAGGTTTTAA
AGAACCAGTTTATCATATATTATCCATACAGTTCAGCATTATATACAGGG
TGTCCCGAAAAACAGTCTTGTGCCAGACCACTTTTATAAGCAGAAAAAAA
ATTGTTTGTGTATCACAAAATTTTAAATCTTTAATTATTCGATTTAAGAC
GATCTTTAAAGAAATGTTATCGGGTTATTCTCATGTTGCATTAATGTGAT
AAGTTGATTAAAGGTTTTTTGCTTTTGTATTATCGTGATTTGTGAAACGA
TCAAGTTCTAATTACCGTTGAATTAAAAAAAGGACAAAAGTTTTTTCGGG
ACACTTTATGTACAAATTCCAACATCAATTTTTAAGGACATTACGTTGAA
CCTTCAAGCAATTATGAAAGTCGGCAAAAACTAGTGACAACATCACCAAC
CAATGACTTGACCACCTTCCACCAAGTGACAACAAAACATTCAACAGCAC
CTTCGGTAACATACCATTCAACACCAATCATAACATCACAAACTAGCCTG
CCATCTTCGTCGACTGATTTGATCTATACGGAATCGAGCTTTCAATCCTC
GTTGTTATCTTCAATACAACAAACTTCTATAATCTTAGATTCACTTCAGT
CAAGCCAATCATCAACATCTCCGACAACAAGTCAACCATTAATATCTCCG
ACAACAAGCCAACCGTCAGTATCTGCGACATCAAGTCAGACGTCGATATT
TTCAACATCAACATCTCTGAGATCAATATCTTTAACATCAAGTCAGGCGT
CGATAACTTCAACATCAAATCAAACGTCGATATCTGCAATATCAAGTCAG
ACGTCAATATCTCCGCCAGCATTATCTCCGGCAATAAGTCAGACATCAAT
ATCTTCAACATCAGGTCAAACATCGATATCTCCGACGTCAAGTCAGACGT
CGATATTTCCAACATCAGGTCAAACATTGACATCTTTAACATCAAGTCAG
ACGTCGATGACTTCAACATCAAGTCAAATGTCGATATCTTCGACATCAAG
TCAGACATCAATATCTTTAACATCAAGTCGAAAATTCACATATCCGACAT
CATTATCTCTGTTATCAAGTCAGACATCAATATCTTCGACGTTGAGTCAG
ATGTCAATATTTCCGACATCAAGTCAAACATCAACATCTCCGACATCAAG
TCAGATGTCGATATCACAGATATCAAGTCAGACATCAATATCTCCGACAT
CAAGTCAGATATCAATATCTCCGACATCAAATCAAACATCGATATCTGCG
ACGTCAAGTCAGACGTCAATATCTCCACCAGCATTATCTCCGGCAACAAG
TCAGACATCAATATCTCCGACATCAAGTCAGAAACTCACATATCCAACAT
CATTATCTCTGTTATCAAGTCAGACATCAATATCTTCGACGTTGAGTCAG
ATGTCAATATTTCCGACATCAAGTCAAACATCAACATCTCCGACATCAAG
TCAGATGTCGATATCACAGATATCAAGTCAGACATCAATATCTCCGACAT
CAAGTCAGATATCAATATCTCCGACATCAAATCAAACATCGATATCTGCG
ACGTCAAGTCAGACGTCAATATCTCCACCAGCATTATCTCCGGCAACAAG
TCAGACATCAATATCTCCGACATCAAGTCAGAAACTCACATATCCAACAT
CATTATCTCTGTTATCAAGTCAGACATCAATATCTTCGACGTTGAGTCAG
ATGTCAATATTTCCGACATCAAGTCAAACATCAACATCTCCGACATCAAG
TCAGATGTCGATATNCATCTTCGACATCAAGTCAGATGTCGATATCACTG
TCGATATCACAGATATCAAGTCAGACATCAATATCTCCAACATCAAGTCA
GACGTCAATATCTCCGACATCAAGTCAGACATCAATATCTTCGACATCAA
GTCAGATGTCAATATCTCCAACATCAAGTCAGACATCAATATCTTCGACA
TCAAGTCAGACATCAATATCTTCGACATCAAGTCAGCTGTGGATATCACA
GATATCAAGTCAGACATCAATATCTCCGACATCAAGTCAGACGTCAATAT
TTCCGACATCAAGTCAGACATCAATACCTCCGATATCAAATCAGATGTCA
ATATCTCCAACTTCAAGTCAGACATCAATATCTTCGACATCAAGTCAGAC
ATCAACATCTTCGACATCAAGTCATATGTCGATATCACAGATATCAAGTC
AGACATCAATATCTTCGACATCAAGTCAGACGTCGATATCTCCAACATCA
AGTCAGACATCAATTTCTCCGACATCAATTCAGGCATCAATATTTTCGAC
ATCAAGTCAGATGTCAATTCAGGCATCAATATCTTCGACATCAAGTCAGA
TGTCAATATCTCTAACATCAAGTCAGACATCAATATCTTCGACATCAAGT
CAGACGTCAATATCTCCGACATCAAGTCAGACATCAATATCTTCGACATC
AAGTCAGATGTCGATATCACAGATATCAAGTCAGACATCAATATCTCCGA
CATCAAGTCAGACG Coding sequence (CDS) from alignment at scaffold_477:424578..427541- >TCONS_00067921 ID=TCONS_00067921|Name=TCONS_00067921|organism=Clytia hemisphaerica|type=CDS|length=2184bp|location=Sequence derived from alignment at scaffold_477:424578..427541- (Clytia hemisphaerica)
ATGATTGTGGAAAAACGTTTGGTTCTTTTTCTAATCCAATTCAACTATTT
GGTTTTGAGAGGACATTACGTTGAACCTTCAAGCAATTATGAAAGTCGGC
AAAAACTAGTGACAACATCACCAACCAATGACTTGACCACCTTCCACCAA
GTGACAACAAAACATTCAACAGCACCTTCGGTAACATACCATTCAACACC
AATCATAACATCACAAACTAGCCTGCCATCTTCGTCGACTGATTTGATCT
ATACGGAATCGAGCTTTCAATCCTCGTTGTTATCTTCAATACAACAAACT
TCTATAATCTTAGATTCACTTCAGTCAAGCCAATCATCAACATCTCCGAC
AACAAGTCAACCATTAATATCTCCGACAACAAGCCAACCGTCAGTATCTG
CGACATCAAGTCAGACGTCGATATTTTCAACATCAACATCTCTGAGATCA
ATATCTTTAACATCAAGTCAGGCGTCGATAACTTCAACATCAAATCAAAC
GTCGATATCTGCAATATCAAGTCAGACGTCAATATCTCCGCCAGCATTAT
CTCCGGCAATAAGTCAGACGTCGATATTTCCAACATCAGGTCAAACATTG
ACATCTTTAACATCAAGTCAGACGTCGATGACTTCAACATCAAGTCAAAT
GTCGATATCTTCGACATCAAGTCAGACATCAATATCTTTAACATCAAGTC
GAAAATTCACATATCCGACATCATTATCTCTGTTATCAAGTCAGACATCA
ATATCTTCGACGTTGAGTCAGATGTCAATATTTCCGACATCAAGTCAAAC
ATCAACATCTCCGACATCAAGTCAGATGTCGATATCACAGATATCAAGTC
AGACATCAATATCTCCGACATCAAGTCAGATATCAATATCTCCGACATCA
AATCAAACATCGATATCTGCGACGTCAAGTCAGACGTCAATATCTCCACC
AGCATTATCTCCGGCAACAAGTCAGACATCAATATCTCCGACATCAAGTC
AGAAACTCACATATCCAACATCATTATCTCTGTTATCAAGTCAGACATCA
ATATCTTCGACGTTGAGTCAGATGTCAATATTTCCGACATCAAGTCAAAC
ATCAACATCTCCGACATCAAGTCAGATGTCGATATCACAGATATCAAGTC
AGACATCAATATCTCCGACATCAAGTCAGATATCAATATCTCCGACATCA
AATCAAACATCGATATCTGCGACGTCAAGTCAGACGTCAATATCTCCACC
AGCATTATCTCCGGCAACAAGTCAGACATCAATATCTCCGACATCAAGTC
AGAAACTCACATATCCAACATCATTATCTCTGTTATCAAGTCAGACATCA
ATATCTTCGACGTTGAGTCAGATGTCAATATTTCCGACATCAAGTCAAAC
ATCAACATCTCCGACATCAAGTCAGATGTCGATATNCATCTTCGACATCA
AGTCAGATGTCGATATCACTGTCGATATCACAGATATCAAGTCAGACATC
AATATCTCCAACATCAAGTCAGACGTCAATATCTCCGACATCAAGTCAGA
CATCAATATCTTCGACATCAAGTCAGATGTCAATATCTCCAACATCAAGT
CAGACATCAATATCTTCGACATCAAGTCAGACATCAATATCTTCGACATC
AAGTCAGCTGTGGATATCACAGATATCAAGTCAGACATCAATATCTCCGA
CATCAAGTCAGACGTCAATATTTCCGACATCAAGTCAGACATCAATACCT
CCGATATCAAATCAGATGTCAATATCTCCAACTTCAAGTCAGACATCAAT
ATCTTCGACATCAAGTCAGACATCAACATCTTCGACATCAAGTCATATGT
CGATATCACAGATATCAAGTCAGACATCAATATCTTCGACATCAAGTCAG
ACGTCGATATCTCCAACATCAAGTCAGACATCAATTTCTCCGACATCAAT
TCAGGCATCAATATTTTCGACATCAAGTCAGATGTCAATTCAGGCATCAA
TATCTTCGACATCAAGTCAGATGTCAATATCTCTAACATCAAGTCAGACA
TCAATATCTTCGACATCAAGTCAGACGTCAATATCTCCGACATCAAGTCA
GACATCAATATCTTCGACATCAAGTCAGATGTCGATATCACAGATATCAA
GTCAGACATCAATATCTCCGACATCAAGTCAGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00067921-exon-scaffold_477-1575043694:427479..427541 | TCONS_00067921-exon-scaffold_477-1575043694:427479..427541 | Clytia hemisphaerica | exon |
| TCONS_00067921-exon-scaffold_477-1575043694:426248..426755 | TCONS_00067921-exon-scaffold_477-1575043694:426248..426755 | Clytia hemisphaerica | exon |
| TCONS_00067921-exon-scaffold_477-1575043694:424578..426193 | TCONS_00067921-exon-scaffold_477-1575043694:424578..426193 | Clytia hemisphaerica | exon |
| TCONS_00067921-exon-scaffold_477-1510915933:427479..427541 | TCONS_00067921-exon-scaffold_477-1510915933:427479..427541 | Clytia hemisphaerica | exon |
| TCONS_00067921-exon-scaffold_477-1510915933:426248..426755 | TCONS_00067921-exon-scaffold_477-1510915933:426248..426755 | Clytia hemisphaerica | exon |
| TCONS_00067921-exon-scaffold_477-1510915933:424578..426193 | TCONS_00067921-exon-scaffold_477-1510915933:424578..426193 | Clytia hemisphaerica | exon |
| TCONS_00067921-exon-scaffold_477-1491911889:427479..427541 | TCONS_00067921-exon-scaffold_477-1491911889:427479..427541 | Clytia hemisphaerica | exon |
| TCONS_00067921-exon-scaffold_477-1491911889:426248..426755 | TCONS_00067921-exon-scaffold_477-1491911889:426248..426755 | Clytia hemisphaerica | exon |
| TCONS_00067921-exon-scaffold_477-1491911889:424578..426193 | TCONS_00067921-exon-scaffold_477-1491911889:424578..426193 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_477 | supercontig | scaffold_477:424578..427541 - |
Blast
The following BLAST results are available for this feature:
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