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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070197 ID=TCONS_00070197|Name=TCONS_00070197|organism=Clytia hemisphaerica|type=transcript|length=3858bpRun BLAST on NCBI protein sequence of TCONS_00070197-protein >TCONS_00070197-protein ID=TCONS_00070197-protein|Name=TCONS_00070197-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1007bp MADTQVTHEVAVELNNFYNVDLFQRGYYQVRCHVSVPQKLTKFVECELKERun BLAST on NCBI transcript from alignment at scaffold_516:73149..84969+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00070197 ID=TCONS_00070197|Name=TCONS_00070197|organism=Clytia hemisphaerica|type=transcript|length=11821bp|location=Sequence derived from alignment at scaffold_516:73149..84969+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_516:73149..84969+ >TCONS_00070197 ID=TCONS_00070197|Name=TCONS_00070197|organism=Clytia hemisphaerica|type=CDS|length=3024bp|location=Sequence derived from alignment at scaffold_516:73149..84969+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00070197 vs. Swiss-Prot (Human)
Match: F135A (Protein FAM135A OS=Homo sapiens GN=FAM135A PE=1 SV=2) HSP 1 Score: 360.147 bits (923), Expect = 5.891e-103 Identity = 191/412 (46.36%), Postives = 260/412 (63.11%), Query Frame = 2
Query: 1937 AVFYTRIDGAEKNLTASQGSNDPVVLEDLEVPDETTQGASAAQNNGTVINGPPSPSDQH---KPKLWSCFPAIKTGSKRNSYKMVTQSPPYMPVSRENTSRFQRARESLLNSFNFHGHKYGLFSEVASVTPYFS-ERIVATTENVHLIVCVHGLDGNSGDLRLVKCYLEMALPRANLDFLMSEVNQEDTFNDIDEMTGRLVREILSYIQDQRLDVARISFVGHSLGNIIIRNAVVHSSLFQYRNKLHTFLSLSGPHLGMQFHTSNLVSTGMWLIQKWKKAGSLVQLALNDSTDPRETFMYRLSLTNGFQYFKNVLLVSSVQDHYVPFHSARVEMSKQAVKDNSEGGRVYKEMLDNIMGTLMIQEEINIVKYSVYHPMASSANTFIGRAAHIAMLDSELFLEKFILVTANKYF 3160
A + +R + E+ LT S+ N + + + +P T G ++ P +P + K S F AI SY + Y + F +A+E L G Y +AS PYFS E + + VHLIVCVHGLDGNS DLRLVK Y+E+ LP +DFLMSE NQ DTF D D MT RL+ EI+ YIQ L V++ISF+GHSLGN+IIR+ + Y NKLHTFLSLSGPHLG +++S LV+TG+W +QKWKK+GSL+QL D +DPR+TF+Y+LS G YFKNV+LV S+QD YVP+HSAR+EM K A+KD + G++Y EM+ N++ ++ ++ N+V+Y+V + + ++A++ IGRAAHIA+LDSE+FLEKF LV A KYF
Sbjct: 1114 AHYTSRDELMEERLTKSEKINSDYLRDGINMPTVCTSGC---------LSFPSAPRESPCNVKYSSKSKFDAITKQPSSTSYNFTSSISWYESSPKPQIQAFLQAKEEL-KLLKLPGFMYSEVPLLASSVPYFSVEEEDGSEDGVHLIVCVHGLDGNSADLRLVKTYIELGLPGGRIDFLMSERNQNDTFADFDSMTDRLLDEIIQYIQIYSLTVSKISFIGHSLGNLIIRSVLTRPRFKYYLNKLHTFLSLSGPHLGTLYNSSALVNTGLWFMQKWKKSGSLLQLTCRDHSDPRQTFLYKLSNKAGLHYFKNVVLVGSLQDRYVPYHSARIEMCKTALKDK-QSGQIYSEMIHNLLRPVLQSKDCNLVRYNVINALPNTADSLIGRAAHIAVLDSEIFLEKFFLVAALKYF 1514 HSP 2 Score: 195.667 bits (496), Expect = 2.366e-50 Identity = 135/423 (31.91%), Postives = 220/423 (52.01%), Query Frame = 2
Query: 143 MADTQVTHEVAVELNNFYNVDLFQRGYYQVRCHVSVPQKLTKFVECELKEEKEGSKQAPCLFKAF-VDKHSPIGISRTFEVYYKHEDVLIKDNFIFKVHXXXXXXXXXXXXPQ-KLELNIDLYFTECSRRYPATP-KSLEKVSSQVLDINLTFGKSFHSSRPILFDYFHLGALNVTTHSCITSVRQPWLASLKAQHPIWSGKTGNVRSFSYNALFGKSNGLNPNHEVDIRQKGTA-----SFLHRK------ICXXXXXXXXXXXAFYHKCIYFLPDYAQMRLSKVDIQAKLDVLNNEFDRLSRADELYLRMGDDMYLLSTELSLLWMQFLEQFTFDDFLRQRLAAEHHEGRVQHMREAFFTEDHAWLSLCTSHELSATQQTRMGNLLKNSLYFQLIPPLDLACATLDGDNTTMPIIFEDKYI 1369
M + Q E +VELN FYNVDLFQRG+YQ+R + +P ++ VE L A + AF H + S+TF++ YK+E+V++ D IFKV +LLD K+E L + L++DL+FT+ Y A +L+ +SS+ L ++ + + H ++FDYFHL ++VT H+ + ++ QP ++ + W + ++ +S N+ + G + SFLH +C LL ++ L +++ +P ++ L ++D++A+L L E ++ DEL + ++ L + L LW QFLE T + LR LA EHH RV+ EAFF +H + EL A +M +KN+ + +PPL + C+ LDGD ++PIIFED+Y+
Sbjct: 1 MTEVQAMVEFSVELNKFYNVDLFQRGFYQIRASMKIPSRIPHRVEASLL-------HATGMTLAFPASVHDSLICSKTFQILYKNEEVVLNDVMIFKVKMLLDERKIEETLEEMNFLLSLDLHFTD--GDYSADDLNALQLISSRTLKLHFSPHRGLHHHVNVMFDYFHLSVVSVTVHASLVALHQPLISFPRPVKTTWLNRNAPAQNKDSVIPTLESVVFGINYTKQLSPDGCSFIIADSFLHHAYRFHYTLCATLLLAFKGLHSYFITVTEEIPSCQKLELEEMDVEARLTELCEEVKKIENPDELAELINMNLAQLCSLLMALWGQFLEVITLHEELRILLAQEHHTLRVRRFSEAFFCFEHPREAAIAYQELHAQSHLQMCTAIKNTSFCSSLPPLPIECSELDGDLNSLPIIFEDRYL 414 The following BLAST results are available for this feature:
BLAST of TCONS_00070197 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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