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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070385 ID=TCONS_00070385|Name=TCONS_00070385|organism=Clytia hemisphaerica|type=transcript|length=4177bpRun BLAST on NCBI protein sequence of TCONS_00070385-protein >TCONS_00070385-protein ID=TCONS_00070385-protein|Name=TCONS_00070385-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1282bp MKEESLFRVFVGGLAPEVKEEELRDRFKSFGTTSDVCLFQKKTSDGVISKRun BLAST on NCBI transcript from alignment at scaffold_55:17025..76969- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00070385 ID=TCONS_00070385|Name=TCONS_00070385|organism=Clytia hemisphaerica|type=transcript|length=59945bp|location=Sequence derived from alignment at scaffold_55:17025..76969- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_55:17025..76969- >TCONS_00070385 ID=TCONS_00070385|Name=TCONS_00070385|organism=Clytia hemisphaerica|type=CDS|length=3849bp|location=Sequence derived from alignment at scaffold_55:17025..76969- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00070385 vs. Swiss-Prot (Human)
Match: NOL8 (Nucleolar protein 8 OS=Homo sapiens GN=NOL8 PE=1 SV=1) HSP 1 Score: 149.443 bits (376), Expect = 3.730e-36 Identity = 75/198 (37.88%), Postives = 118/198 (59.60%), Query Frame = 2
Query: 77 RVFVGGLAPEVKEEELRDRFKSFGTTSDVCLFQKKTSDGVISKTFGYVNLTTTEQQLRKCFAIFGGTKWKGHSLKVQLAKDDFMKRLQKEWENPEPVKISKSRKRKQIDPIRSYEEYIAKSKSTKKAIPGIPLEGEKNWVIGKFGRPLPIVHINGKGSGRKFLKHDPSKHCHCIRRIATD----VPEDRIDGLTWELD 658
R++VGGL+ ++ E +L+++F FG SDV + +K G K F Y+N++ E L+KC ++ TKWKG +L++QLAK+ F+ RL +E E +K++K + + E KA+PG + G KNWV+ KFGR LP++H+ + RK +K+DPSK+CH +++I D +P I LTWEL+
Sbjct: 9 RLYVGGLSQDISEADLQNQFSRFGEVSDVEIITRKDDQGNPQKVFAYINISVAEADLKKCMSVLNKTKWKGGTLQIQLAKESFLHRLAQERE------AAKAKKEESTTGNANLLEKTGGVDFHMKAVPGTEVPGHKNWVVSKFGRVLPVLHLKNQHK-RKIIKYDPSKYCHNLKKIGEDFSNTIP---ISSLTWELE 196 The following BLAST results are available for this feature:
BLAST of TCONS_00070385 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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