|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070547 ID=TCONS_00070547|Name=TCONS_00070547|organism=Clytia hemisphaerica|type=transcript|length=1850bpRun BLAST on NCBI protein sequence of TCONS_00070547-protein >TCONS_00070547-protein ID=TCONS_00070547-protein|Name=TCONS_00070547-protein|organism=Clytia hemisphaerica|type=polypeptide|length=616bp GMTTDKHFASLLLLVTQLQSHVTSVGPTDALNFNIYEDFHLDEARKARGIRun BLAST on NCBI transcript from alignment at scaffold_56:643341..649525- Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00070547 ID=TCONS_00070547|Name=TCONS_00070547|organism=Clytia hemisphaerica|type=transcript|length=6185bp|location=Sequence derived from alignment at scaffold_56:643341..649525- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_56:643341..649525- >TCONS_00070547 ID=TCONS_00070547|Name=TCONS_00070547|organism=Clytia hemisphaerica|type=CDS|length=1848bp|location=Sequence derived from alignment at scaffold_56:643341..649525- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00070547 vs. Swiss-Prot (Human)
Match: MDN1 (Midasin OS=Homo sapiens GN=MDN1 PE=1 SV=2) HSP 1 Score: 270.781 bits (691), Expect = 8.707e-77 Identity = 183/636 (28.77%), Postives = 316/636 (49.69%), Query Frame = 3
Query: 15 DKHFASLLLLVTQLQSHVTSVGPTDAL-----NFNIYEDFHLDEARKARGILEKFDGFVEQLLCEFEDHPALLQIRKLIERVLSLSICSPLMKFVTGFELLLKQSQDWEAYAGSHVSLKNHLEDVTRQIVLWRKMELKTWQNLLQKSEQKMEDSVAKWMFHFWNLLQ---EIETSDDETNCKEKKDEYFQALRQFFESGNIGDFESRIELVVIFFKYIC---QLDETQDLQRVTWNSLQYYSQFLPAVNQHKLALKKPIEKELKDYVKIAKWSDINYYALKLAVEKSHRTLTKFVRKYEGVLNEPITQFLQDATKQTKP--------------SEIQ---KNFHIKLLQDNLTFAIVKP-------PSEKEG-YLAKTDSLCHKMRKHFETVKSNTMYGDLIEGIDEMTGDIIESIQDFQ--KENPLSLPKEKQKEARSNLQQRKRKALATLFKELKMIGISYRIG----------------NIDVTEEATLFQSPK-LESKLASWNDIRECIDTCNFYYFQSVARNALFHNALCAPCKEIGPNEIARFKGLTSFLMTSAFNQRKDLDELLVNENRISTLIESLSEIQR---SSDQKETILPCQTTTKHWLYTINETIYMAEHHLNDFTNLINTCP 1748
D+ S LL T + + P+D + ++ Y+ ++ EAR+ + +L+ F V LL ++ +HPAL Q+ +++R+ S + SP+ KF+ G E+LL ++QDWE A +SL+ HL+ +++ I+ WRK+EL W L + ++ + K F + +L+ + +T + E + + L+ F E ++G+F R++++++F ++ Q++ L V WN YY QF V + L+ P+EKELK++VKI+KW+D++++++K +VEK+HRTL KF++K+E VL+EP L ++ K+ +P S IQ + LL P PS EG L + L +MRK T + L+EG+D+ TG++I S+ + Q K P S KEKQ+ ++ +K++AL+ LFK L IG+SYR G +D+ ++ S + +S+L + +I D C Y+++S+AR+A + AL P KE+G + R +G ++ LM QR+ L L + L+ + EI P Q + W + + L + L+ CP
Sbjct: 3680 DRLLGSQLLACTLSHNTLFGEAPSDLMVKPDGPYDFYQHPNVPEARQCQPVLQGFSEAVSHLLQDWPEHPALEQLLVVMDRIRSFPLSSPISKFLNGLEILLAKAQDWEENASRALSLRKHLDLISQMIIRWRKLELNCWSMSLDNTMKRHTEKSTKHWFSIYQMLEKHMQEQTEEQEDDKQMTLMLLVSTLQAFIEGSSLGEFHVRLQMLLVFHCHVLLMPQVEGKDSLCSVLWNLYHYYKQFFDRVQAKIVELRSPLEKELKEFVKISKWNDVSFWSIKQSVEKTHRTLFKFMKKFEAVLSEPCRSSLVESDKEEQPDFLPRPTDGAASELSSIQNLNRALRETLLAQPAAGQATIPEWCQGAAPSGLEGELLRRLPKLRKRMRKMCLTFMKESPLPRLVEGLDQFTGEVISSVSELQSLKVEP-SAEKEKQRSEAKHILMQKQRALSDLFKHLAKIGLSYRKGLAWARSKNPQEMLHLHPLDLQSALSIVSSTQEADSRLLT--EISSSWDGCQKYFYRSLARHARLNAALATPAKEMGMGNVERCRGFSAHLMKMLVRQRRSLTTLSEQWIILRNLLSCVQEIHSRLMGPQAYPVAFPPQDGVQQWTERLQHLAMQCQILLEQLSWLLQCCP 4312 The following BLAST results are available for this feature:
BLAST of TCONS_00070547 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2025, MARIMBA.