|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00071562 ID=TCONS_00071562|Name=TCONS_00071562|organism=Clytia hemisphaerica|type=transcript|length=4665bp
AATATGGAAAACGAAAACGATATTATCTGCCAACTAAAAGGTAAGTAACT
TCTTTCCTTAAATTGAGCAAGCAGGTGACACTGTAAAGTCGCAGAAAAGA
TTAGTTGTTATTATAACGAGGAACAAGAAGTAACATCTTTTTTTTCCCTT
CAAAGTTTTAgcttaaaaatttatcaatttatcattttattacAATTGCA
AGCAACAATATTACAAATGTTACAAATGAACAAGATCCCATTAACCAATT
GAGAGTAAGTAACTTCTTTCCTTAAATTGACATGGCGAGTGAACACCATG
ACACCAGGACTCCAAAAGGCagcaaaaaacaaataaacgCTCAACAAAGG
AGACAACTCGAACAAATGGTGAGTGAACAACAGGACACCATAATGATTTT
GTCTTAAGATTTTACTTTCTTGTCTATGGTGGTCGAGGCGAGCTAATTTA
ACAGCAAACAAGTGTGTTTTTATTAGCCCAAACACATGCaaagtgaaaga
gtttttaCCGATGTAACCGATTTCCTTGTCTTGACTTAGACAATTTTATT
CCGacgaaaaattaaattttcgctATCTGAAAAGCTACACAttatttaaa
ataaacaaaactcatTTCACAAAATTGGTTTTTTagtccaaaaattaaaa
tgctaATAAGTAGGCATCCTTTTTCCCTCGTAACATGACTATGGGTTGCT
TCAATCGTGGAATTAGTGGAATAATTTGCGATAAAAGTTTTGTTAAACGG
ACTTTTCCCGTTCCGGTCGACTTCCGTTCCACATCAAATgtaagtttttc
tttaaattaattaaaatgctgataaaaatgCATCCTTTTTCCCTCGTAAC
TTGTCTATAGGTTGCTTTAATCTCAAAGAATTGGAAAAGTAATAAATAGT
GGAATAATTTGTGGTGAAAATCTTGTTAAACAGACTTATAACCTTATTTT
ATTCCTGCCTGAAAACCAAGCCGCAATCCTCGAGGAGGCGGAATTGGAAT
AGCAGGTCAGTGATTTGCTAAAtggattttttacaaaaatttgctTTCAA
ATATAAGGACTCTTTCCCTACATAGTGCTCACAAACAAAACCTTTGTCCG
CTAGTtttgattttccttttaaattttttgatttattttcttttataaca
AATACCCCTtggaattacaaaaaaaaagctCTTATACAAACTACTTGGGA
AGGAAACTATTGCTTTTAAAAGCAAACATGTACCCGATTCgcctatttta
gtaaaaattagaAGTCCTTCTTTGTTGTTTATTATAAGTAAACTTTTCAA
TCAAACTCCCTGTTTTTTAACTTTAGATTTTTCTCATTATTTTATAGGTT
GGTGACGTTGACTTTGAAATTATAAGTTAATTTGATATAGTCTGTAAAAT
AGGTCTGTTTTAAGTCACATAAGTTAGTGACTTTGCTAGGAATCCATTCA
ACAATCCATTGTGGATGATGTAAAAGTGCGCTGGCCTTGTTCCCCATGGA
TTAATGCACTAGTTCGAAAAATTACGTGTTACTGTCTCGCAAGCTGACCG
CAGTCTAAACCTACGCTTACACAATTCCAGTGAGACGACTCCTAGACTTC
TCAATACGGAACGGGGAATCCTCTGTTAAGACATTTATAAAGCAGTGTAA
TTTTGACTttgattaaaatgaaaaatgtaaagaatATTGAAAaccatatt
tattttcataGTTTCAAGGAGCAGAAGGAGCAGAAGAAGCAGTAAGAACA
GGAGAGAAGGAGCAGGAGAAGCAGTAGGAGCAAGAGAGGAGGCGGAAGAA
GCAGTAGGAGCAGGAGAGGAGGCGGAAGAAGAACCGGTTGGAGCAGGAGA
GGAGGCGGAAGAAGAACCGGTTGGAGCAGGAGAGGAGGCGGAAAAGGAAC
CGGTTGGAGCAGGAGAGGAGGTCGGAGAAGAACCGGTAGGAGCAGGAGAG
GAGGCGGAAAAGGAACCGGTTGGAGTAGGAGAGGAGGTGTTACCAGCTAT
AGCTCTTCCCACAAGGGGCCGCCCAAGACAGATTTAAAACGAGAAGAGAA
AAAGAGGTCAAGGAAAGGCTCGTCAAATTGGAAAAAGAACGAAGACCCAC
AAAAGTCCGGCCAATGATAGGCACTTACCCTTGACCAAGGGACGGCAAGG
GATGGATCAAAGAAATGAAAGTGGTGGAGTTGAGGGAAGAGCTGCGTAGA
AGGAACCTACCGATGACTGGGCTTGAGTTGGTCATCATCGAAAGGTTGCT
GACCTACTGGATAGAGAACGAGATGGAGGAGGAGGAACATGAAGACAGTA
AGAGGAAGAAAAAAGATTATTATGatgataatgataatgataGTGGTGGC
TCCGGGCCCAGTGGTACGTCCGTTTAATTTaattcttattattttttgtt
tgatattttttcaaattacaaaaagtaAGTCTCAACCGTGTCCATGGTTC
AAAGTTTAAATCAAAGTTTAATGAAGGCAatgtagaaacaaaaaaatagg
aaaaactaatgaacagaTTTTTAACAGTCCAAAATTCTTTCGAAAAATGA
GACTAATCATATTTAGCAAACTGTAATTCTAagtctttgtacaaaaaaaa
taggaaaactaaggaacaaatttttaacaaagtccaaaaaaccctatttt
tgggcattttaaggccctaattagctcaattttttctttcgaaaatgggC
CTCCATCACATTTTTCtaatcaccattttgcacctttgtaccgaAAATCA
CAAAactcctatgattcaatcctgagaaaagttggtaacagatgaacaga
cggacgaacacaggctaatttataggacctccaggtaggtccaaaaatga
aataaagtaTAAAAGTGTTACCCattcaaagaaataatttaCAAATGCTT
TGCTAAACTTAACACATTAAACCCACtgacagaaaagtttttttcgaaac
CGTTTGGGCAGCGACAATACGAGTATCCAGAATAGCAAACTTCCACAATG
CTCCTCCGCTTAAACAAATAAACGAAAGGGAAAATCTCTCGGAATTTTGT
GAGTCTGGAAGCCAACTTGGATTACAATAACAAACCAGAAAGCGTGATGC
GAAATCCATAAAAAAGACTACTTTCTGAGATCTTTTAAAACCCAAGAAAT
TGAGTCACAGTTTAAGAAAAACGATTAAAATTTTGGGTAAGGAAAAATGA
AGTCTTCTATTCTCTGTAGGTTCAGTAGTGAAGTATCTCAATCTTGGTAA
CCATCTGATAACCCCTTTAAGATATATGCTAAGGAGTTTTagttaaaaca
aataaaagggTGCTTGCTTGTTGTGGACAGAATTAGTAGAATTTTTGGCA
ACTAAAAAAATCATTACATTATCACATCACTTAAGATCAATTATCACATC
ACGTAAGATCAATAATCATCAAGAATTTTGTTTCGGTTTAGGGTGAAAAC
CTTGCCCAAATCCTCGAGGAGGCAGAAGCTGAGGTCAACAGTGAGCAGGT
TAGTATTCTTACTTTAAGTACTACATCGTCAGTGAATCATTTATAAAGCA
GTGTAATTTTAACTTTAATTGAATTGAGAAATGTAAAGAATATTGACAac
catatttattttcataGCAAAGCAGAAGAAGCAGGAGAGGAGGTTGGAGA
AGAACCTGTAGGAGCAGGAGAGGAGATCGGAGAAGAACCGGTAGGAGCAG
GAGAGGAGGTGTTACCAGCTATAGCTCTTCCCACAAGGGGCCGCCCAAGA
TGGTTATAAaatgagaagagaaaaatagttCAAGGAAAGGCTCGTCATAT
TGGAAAAAGAACGAAGACTCACGAAAGTCTGGCCAATGATAGGCACTTAC
CCTTGACCAAGGGACGGATCAAAGAAATGAAAGTGGTGGAGTTGAGGGAA
GAGCTGCGAAGAAGGAATCTACCGATGACTGGGCTTAAGTTGGTCATCAT
TGAAAGGTTGCTGACCTACTGGAGAGAGAGCGAGATGGAGGAGGAGGAAC
ACGAAGAAAGTAAAAGGGAGAAGAGATTTTAATGATAAAGATGGTGGAGG
TGAAGGAGAGCTCAGAAGAATACATTTGAGAAGCAGTGGGCTGAAAGCGC
AGCTAATCGAATTATTGCTGGCCTATAAGTCTTGTTTGCTCACTTGTTTG
GGATCGTACttataaatctttcaaaaatagttAGGATTAGttaattttca
attcatttattttttgtgtcctaagttccttttcaattttgagtttgatt
tttcaatgctatttatttatttcaaatttctaaaattcaTTTTGGTATGT
TTAAAATCGGAATATCGAAAAGGTTTTGTTCTTACAACAACAGAGGATAT
tttggtttgaatgtttttgagaaaGGAAGTTTTCAAGCATTATAATTTAC
CATTTTAATTTAAgcatttgaaacaaaaaagccTGAACTCTTAATCGAAA
TTGAACTAAAATGCTCTTTTGTAATTGTTGAAAGTCATTTTTGAGTGGAA
CACTTTCTTAATAAAGTtcacgttttcttaaaaaaaagatcatgaaaatg
aaagatgaagaaaaaatcACATTCTGGTAGAATTGTTTACCTcgttggaa
ctaatttttgcgggttttaattttagcgtttatcgcggtttttcgtcaaa
accgcaaaaattaat Run BLAST on NCBI transcript from alignment at scaffold_61:21693..26390- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00071562 ID=TCONS_00071562|Name=TCONS_00071562|organism=Clytia hemisphaerica|type=transcript|length=4698bp|location=Sequence derived from alignment at scaffold_61:21693..26390- (Clytia hemisphaerica)
AATATGGAAAACGAAAACGATATTATCTGCCAACTAAAAGGTAAGTAACT
TCTTTCCTTAAATTGAGCAAGCAGGTGACACTGTAAAGTCGCAGAAAAGA
TTAGTTGTTATTATAACGAGGAACAAGAAGTAACATCTTTTTTTTCCCTT
CAAAGTTTTAGCTTAAAAATTTATCAATTTATCATTTTATTACAATTGCA
AGCAACAATATTACAAATGTTACAAATGAACAAGATCCCATTAACCAATT
GAGAGTAAGTAACTTCTTTCCTTAAATTGACATGGCGAGTGAACACCATG
ACACCAGGACTCCAAAAGGCAGCAAAAAACAAATAAACGCTCAACAAAGG
AGACAACTCGAACAAATGGTGAGTGAACAACAGGACACCATAATGATTTT
GTCTTAAGATTTTACTTTCTTGTCTATGGTGGTCGAGGCGAGCTAATTTA
ACAGCAAACAAGTGTGTTTTTATTAGCCCAAACACATGCAAAGTGAAAGA
GTTTTTACCGATGTAACCGATTTCCTTGTCTTGACTTAGACAATTTTATT
CCGACGAAAAATTAAATTTTCGCTATCTGAAAAGCTACACATTATTTAAA
ATAAACAAAACTCATTTCACAAAATTGGTTTTTTAGTCCAAAAATTAAAA
TGCTAATAAGTAGGCATCCTTTTTCCCTCGTAACATGACTATGGGTTGCT
TCAATCGTGGAATTAGTGGAATAATTTGCGATAAAAGTTTTGTTAAACGG
ACTTTTCCCGTTCCGGTCGACTTCCGTTCCACATCAAATGTAAGTTTTTC
TTTAAATTAATTAAAATGCTGATAAAAATGCATCCTTTTTCCCTCGTAAC
TTGTCTATAGGTTGCTTTAATCTCAAAGAATTGGAAAAGTAATAAATAGT
GGAATAATTTGTGGTGAAAATCTTGTTAAACAGACTTATAACCTTATTTT
ATTCCTGCCTGAAAACCAAGCCGCAATCCTCGAGGAGGCGGAATTGGAAT
AGCAGGTCAGTGATTTGCTAAATGGATTTTTTACAAAAATTTGCTTTCAA
ATATAAGGACTCTTTCCCTACATAGTGCTCACAAACAAAACCTTTGTCCG
CTAGTTTTGATTTTCCTTTTAAATTTTTTGATTTATTTTCTTTTATAACA
AATACCCCTTGGAATTACAAAAAAAAAGCTCTTATACAAACTACTTGGGA
AGGAAACTATTGCTTTTAAAAGCAAACATGTACCCGATTCGCCTATTTTA
GTAAAAATTAGAAGTCCTTCTTTGTTGTTTATTATAAGTAAACTTTTCAA
TCAAACTCCCTGTTTTTTAACTTTAGATTTTTCTCATTATTTTATAGGTT
GGTGACGTTGACTTTGAAATTATAAGTTAATTTGATATAGTCTGTAAAAT
AGGTCTGTTTTAAGTCACATAAGTTAGTGACTTTGCTAGGAATCCATTCA
ACAATCCATTGTGGATGATGTAAAAGTGCGCTGGCCTTGTTCCCCATGGA
TTAATGCACTAGTTCGAAAAATTACGTGTTACTGTCTCGCAAGCTGACCG
CAGTCTAAACCTACGCTTACACAATTCCAGTGAGACGACTCCTAGACTTC
TCAATACGGAACGGGGAATCCTCTGTTAAGACATTTATAAAGCAGTGTAA
TTTTGACTTTGATTAAAATGAAAAATGTAAAGAATATTGAAAACCATATT
TATTTTCATAGTTTCAAGGAGCAGAAGGAGCAGAAGAAGCAGTAAGAACA
GGAGAGAAGGAGCAGGAGAAGCAGTAGGAGCAAGAGAGGAGGCGGAAGAA
GCAGTAGGAGCAGGAGAGGAGGCGGAAGAAGAACCGGTTGGAGCAGGAGA
GGAGGCGGAAGAAGAACCGGTTGGAGCAGGAGAGGAGGCGGAAAAGGAAC
CGGTTGGAGCAGGAGAGGAGGCGGAAAAGGAACCGGTAGGAGCAGGAGAG
CAGGTCGGAGAAGAACCGGTAGGAGCAGGAGAGGAGGCGGAAAAGGAACC
GGTTGGAGTAGGAGAGGAGGTGTTACCAGCTATAGCTCTTCCCACAAGGG
GCCGCCCAAGACAGATTTAAAACGAGAAGAGAAAAAGAGGTCAAGGAAAG
GCTCGTCAAATTGGAAAAAGAACGAAGACCCACAAAAGTCCGGCCAATGA
TAGGCACTTACCCTTGACCAAGGGACGGCAAGGGATGGATCAAAGAAATG
AAAGTGGTGGAGTTGAGGGAAGAGCTGCGTAGAAGGAACCTACCGATGAC
TGGGCTTGAGTTGGTCATCATCGAAAGGTTGCTGACCTACTGGATAGAGA
ACGAGATGGAGGAGGAGGAACATGAAGACAGTAAGAGGAAGAAAAAAGAT
TATTATGATGATAATGATAATGATAGTGGTGGCTCCGGGCCCAGTGGTAC
GTCCGTTTAATTTAATTCTTATTATTTTTTGTTTGATATTTTTTCAAATT
ACAAAAAGTAAGTCTCAACCGTGTCCATGGTTCAAAGTTTAAATCAAAGT
TTAATGAAGGCAATGTAGAAACAAAAAAATAGGAAAAACTAATGAACAGA
TTTTTAACAGTCCAAAATTCTTTCGAAAAATGAGACTAATCATATTTAGC
AAACTGTAATTCTAAGTCTTTGTACAAAAAAAATAGGAAAACTAAGGAAC
AAATTTTTAACAAAGTCCAAAAAACCCTATTTTTGGGCATTTTAAGGCCC
TAATTAGCTCAATTTTTTCTTTCGAAAATGGGCCTCCATCACATTTTTCT
AATCACCATTTTGCACCTTTGTACCGAAAATCACAAAACTCCTATGATTC
AATCCTGAGAAAAGTTGGTAACAGATGAACAGACGGACGAACACAGGCTA
ATTTATAGGACCTCCAGGTAGGTCCAAAAATGAAATAAAGTATAAAAGTG
TTACCCATTCAAAGAAATAATTTACAAATGCTTTGCTAAACTTAACACAT
TAAACCCACTGACAGAAAAGTTTTTTTCGAAACCGTTTGGGCAGCGACAA
TACGAGTATCCAGAATAGCAAACTTCCACAATGCTCCTCCGCTTAAACAA
ATAAACGAAAGGGAAAATCTCTCGGAATTTTGTGAGTCTGGAAGCCAACT
TGGATTACAATAACAAACCAGAAAGCGTGATGCGAAATCCATAAAAAAGA
CTACTTTCTGAGATCTTTTAAAACCCAAGAAATTGAGTCACAGTTTAAGA
AAAACGATTAAAATTTTGGGTAAGGAAAAATGAAGTCTTCTATTCTCTGT
AGGTTCAGTAGTGAAGTATCTCAATCTTGGTAACCATCTGATAACCCCTT
TAAGATATATGCTAAGGAGTTTTAGTTAAAACAAATAAAAGGGTGCTTGC
TTGTTGTGGACAGAATTAGTAGAATTTTTGGCAACTAAAAAAATCATTAC
ATTATCACATCACTTAAGATCAATTATCACATCACGTAAGATCAATAATC
ATCAAGAATTTTGTTTCGGTTTAGGGTGAAAACCTTGCCCAAATCCTCGA
GGAGGCAGAAGCTGAGGTCAACAGTGAGCAGGTTAGTATTCTTACTTTAA
GTACTACATCGTCAGTGAATCATTTATAAAGCAGTGTAATTTTAACTTTA
ATTGAATTGAGAAATGTAAAGAATATTGACAACCATATTTATTTTCATAG
CAAAGCAGAAGAAGCAGGAGAGGAGGTTGGAGAAGAACCTGTAGGAGCAG
GAGAGGAGATCGGAGAAGAACCGGTAGGAGCAGGAGAGGAGGTGTTACCA
GCTATAGCTCTTCCCACAAGGGGCCGCCCAAGATGGTTATAAAATGAGAA
GAGAAAAATAGTTCAAGGAAAGGCTCGTCATATTGGAAAAAGAACGAAGA
CTCACGAAAGTCTGGCCAATGATAGGCACTTACCCTTGACCAAGGGACGG
ATCAAAGAAATGAAAGTGGTGGAGTTGAGGGAAGAGCTGCGAAGAAGGAA
TCTACCGATGACTGGGCTTAAGTTGGTCATCATTGAAAGGTTGCTGACCT
ACTGGAGAGAGAGCGAGATGGAGGAGGAGGAACACGAAGAAAGTAAAAGG
GAGAAGAGATTTTAATGATAAAGATGGTGGAGGTGAAGGAGAGCTCAGAA
GAATACATTTGAGAAGCAGTGGGCTGAAAGCGCAGCTAATCGAATTATTG
CTGGCCTATAAGTCTTGTTTGCTCACTTGTTTGGGATCGTACTTATAAAT
CTTTCAAAAATAGTTAGGATTAGTTAATTTTCAATTCATTTATTTTTTGT
GTCCTAAGTTCCTTTTCAATTTTGAGTTTGATTTTTCAATGCTATTTATT
TATTTCAAATTTCTAAAATTCATTTTGGTATGTTTAAAATCGGAATATCG
AAAAGGTTTTGTTCTTACAACAACAGAGGATATTTTGGTTTGAATGTTTT
TGAGAAAGGAAGTTTTCAAGCATTATAATTTACCATTTTAATTTAAGCAT
TTGAAACAAAAAAGCCTGAACTCTTAATCGAAATTGAACTAAAATGCTCT
TTTGTAATTGTTGAAAGTCATTTTTGAGTGGAACACTTTCTTAATAAAGT
TCACGTTTTCTTAAAAAAAAGATCATGAAAATGAAAGATGAAGAAAAAAT
CACATTCTGGTAGAATTGTTTACCTCGTTGGAACTAATTTTTGCGGGTTT
TAATTTTAGCGTTTATCGCGGTTTTTCGTCAAAACCGCAAAAATTAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00071562-exon-scaffold_61-1575043694:24471..26390 | TCONS_00071562-exon-scaffold_61-1575043694:24471..26390 | Clytia hemisphaerica | exon |
| TCONS_00071562-exon-scaffold_61-1575043694:21693..24437 | TCONS_00071562-exon-scaffold_61-1575043694:21693..24437 | Clytia hemisphaerica | exon |
| TCONS_00071562-exon-scaffold_61-1510915933:24471..26390 | TCONS_00071562-exon-scaffold_61-1510915933:24471..26390 | Clytia hemisphaerica | exon |
| TCONS_00071562-exon-scaffold_61-1510915933:21693..24437 | TCONS_00071562-exon-scaffold_61-1510915933:21693..24437 | Clytia hemisphaerica | exon |
| TCONS_00071562-exon-scaffold_61-1491911889:24471..26390 | TCONS_00071562-exon-scaffold_61-1491911889:24471..26390 | Clytia hemisphaerica | exon |
| TCONS_00071562-exon-scaffold_61-1491911889:21693..24437 | TCONS_00071562-exon-scaffold_61-1491911889:21693..24437 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_61 | supercontig | scaffold_61:21693..26390 - |
Blast
The following BLAST results are available for this feature:
|
