TCONS_00071653 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071653
Unique NameTCONS_00071653
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1883

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071653 ID=TCONS_00071653|Name=TCONS_00071653|organism=Clytia hemisphaerica|type=transcript|length=1883bp
CCGAAGAactacaaaaatttacaaaacgcACCAAAATGGGATCTGGATCG
AGTAAAAACGATCCACACAAAATGACGAAGAAAGATTTAAGACATTTCTT
GAAGGAGATCAAGCCGCATGCAGCAGGGATAAATGATATGGCAATGACGC
CTGATTGTTCAAAATTACTGACGGTTGGGGAAGACACAGATGCTCGTCTT
ATCGTTAGTGAAGGTCGAGATATTCACGAACTGGAAGGCCACGAAAAGTA
CATCAACTGTGTAGTTTGTACCAATAAATTTGCTTTCACGGCTGCTATGG
ATGGAAGTATTCGTAAATGGTCACTAGATATTAGTTCTCCAGATCTTGGC
AAAAGCTGCCTAGATCTTAAAGGCCATAACGGGTCTGTCAACAGACTACA
GTTAGAGGGTAGTCTACTTTTCTCATCGTCATACGACCGTACGGCCAAAT
GCTGGAGCGCAGACACAGGAGAATGTTTACGTACGTTTAGCGGGCATCGA
GGTAGCATCTATCCGCTTCTCTATATGCCAAAGTCTACGGAAGACACCGA
GACAGACCAGACAGACCTACAAAACAACCATGATTTTTTGGTAACTGGAA
GCGCAGATTGCAATGCACGTCTATGGGCTTTGAGTAGCAAGAAAACGATC
AGAATATTTACCGGTCACGATGGTACTATTTTGACCCTGGGGTCGGATAG
TGCGCATAAGACACTATATACGGGAAGTACAGATCACACTATCTGCGCTT
ACAATATGCTGAATGgtgaaaaaatttgcaaattcaCAGGACATAAAGGG
ATCGTTGTTGAAATTAAAATCGTAAATCGATTGATGTTTTCATCAAGCGC
TGACCATACTGTCAAATGTTGGTTGATTGGGGACGGTGAATTTCAGGGCC
ATCTGATGAGGACATACGTCGGCCACACCCATACCATAAGTGCCTTGACC
CTTTTTGATAAATATCtGATAACAGGCTCTGGAGATACAACAGTAAGAGT
TTATGATGCCAAAGACGGAAGGTGCAGAAAGGTATTAAAAGGACATACTG
CAACCATTAACAAAATTATTGTGAACGAGCTTGAGGAGAAATTATACAGC
GCATCAAATGATAGTACAGTCCGTGTATGGAATTGGAAAACAATTGTCGA
TGACATTACTAAATATTAAACCAAGccagcaaaaaacgttaaataTATCT
AGATTCCATGCCATTCCAATGTAGCTGAACGGGCCTTGCTTCGAAAAATC
CTCAGTAAAATCTGGTACACCAGCTTCTATGTAGTCCCTCTCGTAAACAC
CTCTATCTCAAAGCCCCGCtgaaactttttcctacagTGGCGATAAAAAT
CTCGGGCCTTTCCTACAGTGGCGATAAAAATCTCGATTGAAATCACaatt
gggataaaaattccattgttccaaggttaaaaaatccagtggggctGGTT
TTGGTtttctaaacaatgaatttcgaatggggatgaaatcagaGTCAATT
TTTCAGtcgggctgaaattctagggtatttttcccaccggggacgaaatt
tttgccaaattttgtgAGTCTGTGACATAGGGGTGTTCGTAAGAACGTGT
TTATATTCAGCATTAGGTTTATAGTCGTATTTTAACGGTAGTAAAACAGC
TTGGTGTTTACAAACCTTTGCATTGAAACTTCTTGAAGAATTTTCAAGTC
TGATTTTCGACCTACTAATTATCTCAAGTTTAATAAGGTTAATTTTGACG
ATGAGCAAAAGTGGAAAGGTGATTCTTGCAGTAAAAAATCACATTGTTGA
CAATCGCCCAGCGAATTTTACCAAAACTCAATTTTTCACACTTCGTTGCG
TTgagttttatcaaaattattagAAAAATTAAT
Run BLAST on NCBI

protein sequence of TCONS_00071653-protein

>TCONS_00071653-protein ID=TCONS_00071653-protein|Name=TCONS_00071653-protein|organism=Clytia hemisphaerica|type=polypeptide|length=388bp
EELQKFTKRTKMGSGSSKNDPHKMTKKDLRHFLKEIKPHAAGINDMAMTP
DCSKLLTVGEDTDARLIVSEGRDIHELEGHEKYINCVVCTNKFAFTAAMD
GSIRKWSLDISSPDLGKSCLDLKGHNGSVNRLQLEGSLLFSSSYDRTAKC
WSADTGECLRTFSGHRGSIYPLLYMPKSTEDTETDQTDLQNNHDFLVTGS
ADCNARLWALSSKKTIRIFTGHDGTILTLGSDSAHKTLYTGSTDHTICAY
NMLNGEKICKFTGHKGIVVEIKIVNRLMFSSSADHTVKCWLIGDGEFQGH
LMRTYVGHTHTISALTLFDKYLITGSGDTTVRVYDAKDGRCRKVLKGHTA
TINKIIVNELEEKLYSASNDSTVRVWNWKTIVDDITKY
Run BLAST on NCBI

transcript from alignment at scaffold_63:420430..424315+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071653 ID=TCONS_00071653|Name=TCONS_00071653|organism=Clytia hemisphaerica|type=transcript|length=3886bp|location=Sequence derived from alignment at scaffold_63:420430..424315+ (Clytia hemisphaerica)
CCGAAGAactacaaaaatttacaaaacgcACCAAAATGGGATCTGGATCG
AGTAAAAACGATCCACACAAAATGACGAAGAAAGATTTAAGACATTTCTT
GAAGGAGATCAAGCCGCATGCAGCAGGGATAAATGATATGGCAATGACGC
CTGATTGTTCAAAATTACTGACGGTAAGTGTATTTAGTGGGCCCTTAATG
AAAAAGGGAACGCGCACATCTGAGAGTTTGTGATATTTTTAACTGTGTCA
AAATCTCTGGAACAAGCTATGTtcaccaaattttttttataaggaactat
aactttgctctgagccttgAGTTCCTGATTTTATCAGAgagtttcagcct
caaagttccttatcgagctccttatttacatagctgttAAGTTGGGAttt
gatatattttctttttgtcaCATTGAATGTCGTTTCAGCAGTATTTTTCG
TCTCGAGTTCCTTGTAAACGTGCTccttatcacgcctctcctaaactatt
cccttttttagtgatcttgtgtagacgataggatcgtctaggtATTGACC
TGGATTAAGTGGTGATTCCATTAGGGTACAAAATTCAAACAACATATATC
AAAGATCTTTGATTGCCAGGATTGTGGAGCTGTCTCCAGGGTTCAAAATT
CAATCAACATATATCAAAGATCTTTGATTGCCAGGATTGTGGAGCTGTCT
CCAGGATTCAAAATTCAATCAACATATATCAAAGATCTTTGATTGCCAGG
ATTGTGGAGCTGTCTCCAGGGTTTTGATTAAACTCAGTGGTTTCCGAAAC
AGTGGTCTTCGATCATCTTCAGTTTGATTATTCTTTTGAAACTGTGATGC
TCGTCATGAAAAGGTTCTTTCCTATTCCACATCAATTTTATAAGTTGGAG
AAGACACCAAGAGGCCGATTTTCACTTTGAGTTAAAGCTTTCAATCTTTG
CTGATATCTTCTTCTTTCGAAACAACGATTATCCTCCGTAAATGATTTAT
ATTTCCAAATCAATTTACAGGTTGGGGAAGACACAGATGCTCGTCTTATC
GTTAGTGAAGGTCGAGATATTCACGAACTGGAAGGCCACGAAAAGTACAT
CAACTGTGTAGTTTGTACCAATAAATTTGCTTTCACGGCTGCTATGGATG
GAAGTATTCGTAAATGGTCACTAGATATTAGTTCTCCAGATCTTGGCAAA
AGCTGCCTAGATCTTAAAGGCCATAACGGGTCTGTCAACAGACTACAGTT
AGAGGGTAGTCTACTTTTCTCATCGTCATACGACCGTACGGCCAAATGCT
GGAGCGCAGACACAGGAGAATGTTTACGTACGTTTAGCGGGCATCGAGGT
AGCATCTATCCGCTTCTCTATATGCCAAAGTCTACGGAAGACACCGAGAC
AGACCAGACAGACCTACAAAACAACCATGATTTTTTGGTAACTGGAAGCG
CAGATTGCAATGCACGTCTATGGGCTTTGAGTAGCAAGAAAACGATCAGA
ATATTTACCGGTCACGATGGTACTATTTTGACCCTGGGGTCGGATAGTGC
GCATAAGACACTATATACGGGAAGTACAGATCACACTATCTGCGCTTACA
ATATGCTGAATGgtgaaaaaatttgcaaattcaCAGGACATAAAGGGATC
GTTGTTGAAATTAAAGTAAGGGCTCACTTTTCTAACAATACATTAAAGAT
CGAGTTAGAGAAATAATCGACTGCACCACAAATCTTTGATTCTTTACATT
ATTTCAGATCGTAAATCGATTGATGTTTTCATCAAGCGCTGACCATACTG
TCAAATGTTGGTTGATTGGGGACGGTGAATTTCAGGGCCATCTGATGAGG
ACATACGTCGGCCACACCCATACCATAAGTGCCTTGACCCTTTTTGATAA
ATATCGTAAGTCAAATTCCTTTTACAATGACAGGTTTGTGCTGAGAAATT
GAAGTGAAGATTTAGAAAGCTCTCTGATCTTTCAACAACTATTGACAGTT
AAGATTTTTGTAACATCGCTTATTGGCCAGGATGGAGTCCTATAAGTTAG
CAAGCTTTGACTCCCTTCGCTAAATATCGTAAGTCATATGTGAGggtttt
gctttatttttgatAGGTCAGTGAATGATAAATTATGAATTAGCTTCAGA
CGAACTCtaatttttcaacataaaagCTTCAGTAATGGCAACCAGTTGTT
GTATTTGATCTGTAAAAAAGTTTCGATTTTCAATCTTAATAGGCCGGGAA
GATCTGACAAgaatacagtgtgtcccaaaaaaagcggacaaatcTTGTTA
ATTTATacgaaattttatgacttgtataCTTAACATTTCAATCAGCTTGG
GAATTGAACATCTATTAACTGAAAAGAGAATTTTAATCGAatctctattt
ttctttcttagtGATAACAGGCTCTGGAGATACAACAGTAAGAGTTTATG
ATGCCAAAGACGGAAGGTGCAGAAAGGTATTAAAAGGACATACTGCAACC
ATTAACAAAATTATTGTAAGTATTTTTCAATTGAAATCTTGAAGTTAAAC
TCTGTGTATCTTGATAATACTCTAGAGTAAAGTTTTAacttaatttttca
aagttttagcTTAAGGATAAACCACTGACACCGCAGGCTGAAGTCGTTTA
TTACCAGATGATACGATAATTGTTGCGAGATAACACAAGTTTTTTAGACT
ACgaaagaccttttcataaattacgttacgaatatcacttgcctcgtttt
aaaATTATTGCTATGGTGACTCCCGGTGGGAGAAGACTacttctattcat
aaaaaaaatcaattaataTTGGTAATAGGGTAcaatggtaattgtttgaa
tacgaggctagcgatgttcgtgacgtaatttgtgaaaaggtctatttgcc
CATTCTATTGCTTTTTGCTCATTTTTTACCTTGTTTGAATTAGTCGCTTA
GGATGCTAGACTTCTGGGAAACGAAGAAAAGCGTCAAGATTAGGTGAAAA
TTGCAGAGAGGTTATTTTGTCTCTTTTGTCTCTTTGGTTGACAAAAACTG
AtaataacttttgtttttgctaGGTGAACGAGCTTGAGGAGAAATTATAC
AGCGCATCAAATGATAGTACAGTCCGTGTATGGAATTGGAAAACAATTGT
CGATGACATTACTAAATATTAAACCAAGccagcaaaaaacgttaaataTA
TCTAGATTCCATGCCATTCCAATGTAGCTGAACGGGCCTTGCTTCGAAAA
ATCCTCAGTAAAATCTGGTACACCAGCTTCTATGTAGTCCCTCTCGTAAA
CACCTCTATCTCAAAGCCCCGCtgaaactttttcctacagTGGCGATAAA
AATCTCGGGCCTTTCCTACAGTGGCGATAAAAATCTCGATTGAAATCACa
attgggataaaaattccattgttccaaggttaaaaaatccagtggggctG
GTTTTGGTtttctaaacaatgaatttcgaatggggatgaaatcagaGTCA
ATTTTTCAGtcgggctgaaattctagggtatttttcccaccggggacgaa
atttttgccaaattttgtgAGTCTGTGACATAGGGGTGTTCGTAAGAACG
TGTTTATATTCAGCATTAGGTTTATAGTCGTATTTTAACGGTAGTAAAAC
AGCTTGGTGTTTACAAACCTTTGCATTGAAACTTCTTGAAGAATTTTCAA
GTCTGATTTTCGACCTACTAATTATCTCAAGTTTAATAAGGTTAATTTTG
ACGATGAGCAAAAGTGGAAAGGTGATTCTTGCAGTAAAAAATCACATTGT
TGACAATCGCCCAGCGAATTTTACCAAAACTCAATTTTTCACACTTCGTT
GCGTTgagttttatcaaaattattagAAAAATTAAT

Coding sequence (CDS) from alignment at scaffold_63:420430..424315+

>TCONS_00071653 ID=TCONS_00071653|Name=TCONS_00071653|organism=Clytia hemisphaerica|type=CDS|length=1167bp|location=Sequence derived from alignment at scaffold_63:420430..424315+ (Clytia hemisphaerica)
GAAGAactacaaaaatttacaaaacgcACCAAAATGGGATCTGGATCGAG
TAAAAACGATCCACACAAAATGACGAAGAAAGATTTAAGACATTTCTTGA
AGGAGATCAAGCCGCATGCAGCAGGGATAAATGATATGGCAATGACGCCT
GATTGTTCAAAATTACTGACGGTTGGGGAAGACACAGATGCTCGTCTTAT
CGTTAGTGAAGGTCGAGATATTCACGAACTGGAAGGCCACGAAAAGTACA
TCAACTGTGTAGTTTGTACCAATAAATTTGCTTTCACGGCTGCTATGGAT
GGAAGTATTCGTAAATGGTCACTAGATATTAGTTCTCCAGATCTTGGCAA
AAGCTGCCTAGATCTTAAAGGCCATAACGGGTCTGTCAACAGACTACAGT
TAGAGGGTAGTCTACTTTTCTCATCGTCATACGACCGTACGGCCAAATGC
TGGAGCGCAGACACAGGAGAATGTTTACGTACGTTTAGCGGGCATCGAGG
TAGCATCTATCCGCTTCTCTATATGCCAAAGTCTACGGAAGACACCGAGA
CAGACCAGACAGACCTACAAAACAACCATGATTTTTTGGTAACTGGAAGC
GCAGATTGCAATGCACGTCTATGGGCTTTGAGTAGCAAGAAAACGATCAG
AATATTTACCGGTCACGATGGTACTATTTTGACCCTGGGGTCGGATAGTG
CGCATAAGACACTATATACGGGAAGTACAGATCACACTATCTGCGCTTAC
AATATGCTGAATGgtgaaaaaatttgcaaattcaCAGGACATAAAGGGAT
CGTTGTTGAAATTAAAATCGTAAATCGATTGATGTTTTCATCAAGCGCTG
ACCATACTGTCAAATGTTGGTTGATTGGGGACGGTGAATTTCAGGGCCAT
CTGATGAGGACATACGTCGGCCACACCCATACCATAAGTGCCTTGACCCT
TTTTGATAAATATCtGATAACAGGCTCTGGAGATACAACAGTAAGAGTTT
ATGATGCCAAAGACGGAAGGTGCAGAAAGGTATTAAAAGGACATACTGCA
ACCATTAACAAAATTATTGTGAACGAGCTTGAGGAGAAATTATACAGCGC
ATCAAATGATAGTACAGTCCGTGTATGGAATTGGAAAACAATTGTCGATG
ACATTACTAAATATTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044520XLOC_044520Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071653-exon-scaffold_63-1491911889:420430..420602TCONS_00071653-exon-scaffold_63-1491911889:420430..420602Clytia hemisphaericaexon
TCONS_00071653-exon-scaffold_63-1510915933:420430..420602TCONS_00071653-exon-scaffold_63-1510915933:420430..420602Clytia hemisphaericaexon
TCONS_00071653-exon-scaffold_63-1575043694:420430..420602TCONS_00071653-exon-scaffold_63-1575043694:420430..420602Clytia hemisphaericaexon
TCONS_00071653-exon-scaffold_63-1491911889:421450..422094TCONS_00071653-exon-scaffold_63-1491911889:421450..422094Clytia hemisphaericaexon
TCONS_00071653-exon-scaffold_63-1510915933:421450..422094TCONS_00071653-exon-scaffold_63-1510915933:421450..422094Clytia hemisphaericaexon
TCONS_00071653-exon-scaffold_63-1575043694:421450..422094TCONS_00071653-exon-scaffold_63-1575043694:421450..422094Clytia hemisphaericaexon
TCONS_00071653-exon-scaffold_63-1491911889:422187..422334TCONS_00071653-exon-scaffold_63-1491911889:422187..422334Clytia hemisphaericaexon
TCONS_00071653-exon-scaffold_63-1510915933:422187..422334TCONS_00071653-exon-scaffold_63-1510915933:422187..422334Clytia hemisphaericaexon
TCONS_00071653-exon-scaffold_63-1575043694:422187..422334TCONS_00071653-exon-scaffold_63-1575043694:422187..422334Clytia hemisphaericaexon
TCONS_00071653-exon-scaffold_63-1491911889:422841..422944TCONS_00071653-exon-scaffold_63-1491911889:422841..422944Clytia hemisphaericaexon
TCONS_00071653-exon-scaffold_63-1510915933:422841..422944TCONS_00071653-exon-scaffold_63-1510915933:422841..422944Clytia hemisphaericaexon
TCONS_00071653-exon-scaffold_63-1575043694:422841..422944TCONS_00071653-exon-scaffold_63-1575043694:422841..422944Clytia hemisphaericaexon
TCONS_00071653-exon-scaffold_63-1491911889:423503..424315TCONS_00071653-exon-scaffold_63-1491911889:423503..424315Clytia hemisphaericaexon
TCONS_00071653-exon-scaffold_63-1510915933:423503..424315TCONS_00071653-exon-scaffold_63-1510915933:423503..424315Clytia hemisphaericaexon
TCONS_00071653-exon-scaffold_63-1575043694:423503..424315TCONS_00071653-exon-scaffold_63-1575043694:423503..424315Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071653-proteinTCONS_00071653-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_63supercontigscaffold_63:420430..424315 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0635802	0	0.0719887	0.117383	0.0285805	0	0.10899	0.0255087	0.0178593	0.0442451	0	0.042344	0.634278	0.468412	0.0604985	0.0904026	1.14551	1.10888	2.52325	1.01373	4.83587	4.24247	0.29242	0.640673	1.29716	2.13232	0.0871811	0.404936	0.0709637	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR020472G-protein_beta_WD-40_rep
IPR001680WD40_repeat
IPR015943WD40/YVTN_repeat-like_dom
IPR017986WD40_repeat_dom
IPR011047Quinoprotein_ADH-like_supfam
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
[Close]
BLAST of TCONS_00071653 vs. Swiss-Prot (Human)
Match: WDR86 (WD repeat-containing protein 86 OS=Homo sapiens GN=WDR86 PE=2 SV=3)

HSP 1 Score: 235.343 bits (599), Expect = 2.732e-70
Identity = 139/352 (39.49%), Postives = 201/352 (57.10%), Query Frame = 3 
Query:   99 LKEIKPHAAGINDMAMTPDCSKLLTVGEDTDARLI-VSEGRDIHELEGHEKYINCVVCTNKFAFTAAMDGSIRKWSLDISSPDLGKSCLDL-KGHNGSVNRLQLEGSLLFSSSYDRTAKCWSADTGECLRTFSGHRGSIYPLLY-----MPKSXXXXXXXXXXLQNNHDFLVTGSADCNARLWALSSKKTIRIFTGHDGTILTLGSDSAHKTLYTGSTDHTICAYNMLNGEKICKFTGHKGIVVEIKIVNRLMFSSSADHTVKCWLIGDGEFQGHLMRTYVGHTHTISALTLFDKYLITGSGDTTVRVYDAKDGRCRKVLKGHTATINKIIVNELEEKLYSASNDSTVRVWN 1133
            L+    H  GIN ++++PD  +LLT  ED  ARL   ++G+    L+GHE Y+      ++ AFT + D +IR+W +      L   CL + +GH   VNR+ +  + LFSSSYDRTA+ WS D G+  R F GHR  +  L Y     +P +    E     L      LVTGS D  A++W ++S    +   GH G +L L  D+   T +TGSTD TI A+++L+GE++  F  H+G V+ +++VNRL++S SAD TVKCWL   GE     +RT+  H   +SAL      L TGSGD   R +DA+ G  R+V +GHT  IN I V+   + LY+AS+D  +R+W+
Sbjct:    8 LRVCADHRGGINWLSLSPDGQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQLEDEAAFTCSADCTIRRWDV------LTGQCLQVYRGHTSIVNRILVANNQLFSSSYDRTARVWSVDKGQMSREFRGHRNCVLTLAYSAPWDLPSTPCAEEAAAGGL------LVTGSTDGTAKVWQVASGCCHQTLRGHTGAVLCLVLDTPGHTAFTGSTDATIRAWDILSGEQLRVFREHRGSVICLELVNRLVYSGSADRTVKCWLADTGE----CVRTFTAHRRNVSALKYHAGTLFTGSGDACARAFDAQSGELRRVFRGHTFIINCIQVH--GQVLYTASHDGALRLWD 341
The following BLAST results are available for this feature:
BLAST of TCONS_00071653 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
WDR862.732e-7039.49WD repeat-containing protein 86 OS=Homo sapiens GN... [more]
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