|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072301 ID=TCONS_00072301|Name=TCONS_00072301|organism=Clytia hemisphaerica|type=transcript|length=4773bpRun BLAST on NCBI protein sequence of TCONS_00072301-protein >TCONS_00072301-protein ID=TCONS_00072301-protein|Name=TCONS_00072301-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1515bp MGTDVKRSLNQNLPPYEVLYHQLVSLKSDNLDEFTLVIKLSQALKCHGYDRun BLAST on NCBI transcript from alignment at scaffold_76:33675..55351+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00072301 ID=TCONS_00072301|Name=TCONS_00072301|organism=Clytia hemisphaerica|type=transcript|length=21677bp|location=Sequence derived from alignment at scaffold_76:33675..55351+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_76:33675..55351+ >TCONS_00072301 ID=TCONS_00072301|Name=TCONS_00072301|organism=Clytia hemisphaerica|type=CDS|length=4548bp|location=Sequence derived from alignment at scaffold_76:33675..55351+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00072301 vs. Swiss-Prot (Human)
Match: ZSWM8 (Zinc finger SWIM domain-containing protein 8 OS=Homo sapiens GN=ZSWIM8 PE=1 SV=1) HSP 1 Score: 184.882 bits (468), Expect = 1.163e-46 Identity = 94/223 (42.15%), Postives = 132/223 (59.19%), Query Frame = 3
Query: 3192 QSIEAEAFSLFELAKALLTQYRNNAMPYFSXXXXXXXXXXXXXRRLQLAAFEIGIFALNIHNYSSPNWFSRTYSSYVSWIETLAIEIGTSAIRMLNEKWEGVLTPSEAIQIAGRVSRGGDQVLRRTAVELSLSCLPYCQSLNSVEVTQTMSMCREQDHELLERACSTLENASRQGGVQPELLFSVAREWHYLHEEKRKRESAETPSDQNTPRSPSRSGRHNAR 3860
Q EA A FELAK +L + N+ + +R L L AFEIG++AL +HN+ SPNW SRTYSS+VSWI A+EIG++A+ +L E W+G LTP E +A R SR D + R A EL+LSCLP+ +LN E+ + + C+EQD+ +LE+AC +E A++ GGV PE+LF VA +W +L+E+ S + S R+G R
Sbjct: 1232 QPSEAAAHFYFELAKTVLIKAGGNSSTSIFTHPSSSGGHQGPHRNLHLCAFEIGLYALGLHNFVSPNWLSRTYSSHVSWITGQAMEIGSAALTILVECWDGHLTPPEVASLADRASRARDSNMVRAAAELALSCLPHAHALNPNEIQRALVQCKEQDNLMLEKACMAVEEAAKGGGVYPEVLFEVAHQWFWLYEQTAGGSSTAREGATSCSASGIRAGGEAGR 1454 HSP 2 Score: 144.821 bits (364), Expect = 2.047e-34 Identity = 71/177 (40.11%), Postives = 109/177 (61.58%), Query Frame = 3
Query: 4149 YLQNSYRVGMLALKALALRMPDDRPETRFAVAPPCSDDFRWLCALAASLGPTYLKNFCKVVYDAVTSPFLLHDLALEAARNFALYNPAHLTSHLRSPSVSPIVQKALVMFNEKVHYDLVLLQPNKYNDFVELLRRTRSAFCMAPGGMQRFNDILEMIRKTYPKKGELWQKIMNGLST 4679
+L +YRVGMLAL+ L R +D P F+ +PP +DD +WL LAA LG Y+ FC V SPF+L ++ +E + +PAH +HLR+P+ +VQ+ + + +H+ L+ L P Y+DFV +R RSAFC+ P GM +FNDIL+ ++++ K ELWQ++ ++T
Sbjct: 1663 HLHAAYRVGMLALEMLGRRAHNDHPNN-FSRSPPYTDDVKWLLGLAAKLGVNYVHQFCVGAAKGVLSPFVLQEIVMETLQRL---SPAHAHNHLRAPAFHQLVQRCQQAYMQYIHHRLIHLTPADYDDFVNAIRSARSAFCLTPMGMMQFNDILQNLKRSKQTK-ELWQRVSLEMAT 1834 HSP 3 Score: 88.9669 bits (219), Expect = 2.135e-17 Identity = 61/230 (26.52%), Postives = 110/230 (47.83%), Query Frame = 3
Query: 261 SQALKCHGYDKQASRLAFVLGQKIILTYPE-------------RISAGELNF--TEITEKAKAICETFTKCSENERLTFELAILGLTVPRFPAQTNLEEMKLIYLETELYKCLKGMLITEERLNFIRYQARKLVTKPMLRGDIVLPYIIAMLVFEILCQENIDSCIYAGPNVKFDKALQRSKEDELLGYQCALQALGLYSNAVDHKQPMLCESIRQFRRELALVLLRHYR 905
++AL HGY +ASRL L Q ++ P+ ++S + T KA + ++ E+ L F + + L + R PA T E+KL Y E+E+ LK + + ++ +R +A +L + VLP ++A +F++LC P+ ++ + DE LG++ A+ ALG+ + + + P+LCE R+ + +LAL L+ Y+
Sbjct: 777 AEALHAHGYSSEASRLTVELAQDLLANPPDLKVEPPPAKGKKNKVSTSRQTWVATNTLSKAAFLLTVLSERPEHHNLAFRVGMFALELQRPPASTKALEVKLAYQESEVAALLKKIPLGPSEMSTMRCRAEELREGTLCDYRPVLPLMLASFIFDVLCAPGSRP-----PSRNWN---SETPGDEELGFEAAVAALGMKTTVSEAEHPLLCEGTRREKGDLALALMITYK 998 The following BLAST results are available for this feature:
BLAST of TCONS_00072301 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2025, MARIMBA.