TCONS_00007668 (transcript) - C. hemisphaerica

Overview
NameTCONS_00007668
Unique NameTCONS_00007668
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length458

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00007668 ID=TCONS_00007668|Name=TCONS_00007668|organism=Clytia hemisphaerica|type=transcript|length=458bp
GCAAAGCTCAAAATGCCGATTGTCTATATGATCAAAAAGAGACGCTTGTC
TTGGTTTGGGCATGTAGCAAGACTGCCCGAGGAAAGTCTAGccaaaatat
gtttgaaaaatgaattcCAAGACACACAAAGAAGAGGTAGACCTGAAAAA
AGGTGGCAAGATAAAATCAGGGAAGACACAGGTCTTCCATTAGCAACGGC
CGAACGATACGCACGTGATAGAACCAGATGGCGAGAGAAAGTACACAAGT
GGGCGAAGGCTCAACCAGAGGTGTGCTGATAAGTCAAGTTAAGTCAAAGT
TGGCAACTATTGccgaaaacagcaattttttctATGATAacatgctgaat
cagcagaaaagtaaaaaaagtaagtaaattaaaattgccattttcggcaa
ttattgcaggttttggaaagaaaagttgattgattattgaacacgtggta
ttcgACAC
Run BLAST on NCBI

transcript from alignment at sc0000078:550392..550849

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00007668 ID=TCONS_00007668|Name=TCONS_00007668|organism=Clytia hemisphaerica|type=transcript|length=458bp|location=Sequence derived from alignment at sc0000078:550392..550849 (Clytia hemisphaerica)
GTGTcgaataccacgtgttcaataatcaatcaacttttctttccaaaacc
tgcaataattgccgaaaatggcaattttaatttacttactttttttactt
ttctgctgattcagcatgtTATCATagaaaaaattgctgttttcggCAAT
AGTTGCCAACTTTGACTTAACTTGACTTATCAGCACACCTCTGGTTGAGC
CTTCGCCCACTTGTGTACTTTCTCTCGCCATCTGGTTCTATCACGTGCGT
ATCGTTCGGCCGTTGCTAATGGAAGACCTGTGTCTTCCCTGATTTTATCT
TGCCACCTTTTTTCAGGTCTACCTCTTCTTTGTGTGTCTTGgaattcatt
tttcaaacatattttggCTAGACTTTCCTCGGGCAGTCTTGCTACATGCC
CAAACCAAGACAAGCGTCTCTTTTTGATCATATAGACAATCGGCATTTTG
AGCTTTGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004341XLOC_004341Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007668-exon-sc0000078-1491911889:550392..550849TCONS_00007668-exon-sc0000078-1491911889:550392..550849Clytia hemisphaericaexon
TCONS_00007668-exon-sc0000078-1510915933:550392..550849TCONS_00007668-exon-sc0000078-1510915933:550392..550849Clytia hemisphaericaexon
TCONS_00007668-exon-sc0000078-1575043694:550392..550849TCONS_00007668-exon-sc0000078-1575043694:550392..550849Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000078supercontigsc0000078:550392..550849 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.484729	0.470749	1.40706	0.971546	1.3964	0.478783	0.921092	1.07514	0.724726	1.50185	0.885962	1.49963	0.735498	2.06269	0.646291	0.824993	0.598928	1.15972	0.346955	1.29937	0.826552	0.894203	0	0.950718	0.776853	1.55166	2.17129	0.736504	1.2173	1.99121
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00007668 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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