TCONS_00000174 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00000174
Unique Name	TCONS_00000174
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	967

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at sc0000001:705893..711578-
coding sequence from alignment at sc0000001:705893..711578-

transcript sequence

>TCONS_00000174 ID=TCONS_00000174|Name=TCONS_00000174|organism=Clytia hemisphaerica|type=transcript|length=967bp
gaatttttgataatatttaaaGCAAACATGGAAGAAACAAGTGCTGTTGA
AAAATCAGAGAGTAAAGCAAATCTTGGAGAAGATTACTGGCTGCAAGAAT
TGTGTTTATCCAATGGACTTGACCCTAAAAGTGATTTGTCACAGGTGGAA
CTGCTTGAGCTTTTTCTTAGTGTTATACCAATGGTACCATCATTGAATAC
ATATCCTTCTTTAACAATTCTACGCATTGTTGGTTGTACgattacaaaaa
ttgaaaatcttcaTATTGTACCTAATCTGAAGGAACTTTGGCTTTGTGAG
GGAAAAATACAGAAACTGGAAGGGCTTGAGAAGAACAGCAAACTGGAGAA
GTTATATATGTACAAAAATGAGCTGagtaaaatagaaaatatatcCCATT
TACTCACGTTGACAACATTAtggttgaataaaaacaaaattgaagtgaTA
GAGAATATGGAACAATTACGACAactcaaatttttgaatttgagtGATAA
TCAGATACATAGTATTGGTACATCACTAATTTGTTGTAATCTGTTAGAAG
AAGTGAATCTATCTGGCAATAGAATAAATTCTCTCAAGGATATTACCAAC
ATCTCATGCTTGAGGAATCTCATAGCTTTGGATTTAAAAGATCCTATGTG
TCATCCAAACCCTGTGACACTACTATGCAATTATTCCACCTATGTTTTGT
ATCATATGCCATCATTAAAAAGATTGGATTCAGTTgatgtttcaatgaaa
atgcTGAAAGAGGCTGCTGAGTCAACAGTCAATAAAAAGCGTATCTTCTA
CAAGATGAGAATTCGAACCATTCAACGGGAATGTATTGAGATGCGTGAAC
AGCTTAAAGAACACCTTGAGAATCTACGTGAAGAATCTGTCACTAGTATT
CATAAACTGTCAAATGCTACTAAAGAGCTTGAACGTGAGCTTGATGAGTT
GTCAACTAAGCCGGAGA

Run BLAST on NCBI

protein sequence of TCONS_00000174-protein

>TCONS_00000174-protein ID=TCONS_00000174-protein|Name=TCONS_00000174-protein|organism=Clytia hemisphaerica|type=polypeptide|length=322bp
EFLIIFKANMEETSAVEKSESKANLGEDYWLQELCLSNGLDPKSDLSQVE
LLELFLSVIPMVPSLNTYPSLTILRIVGCTITKIENLHIVPNLKELWLCE
GKIQKLEGLEKNSKLEKLYMYKNELSKIENISHLLTLTTLWLNKNKIEVI
ENMEQLRQLKFLNLSDNQIHSIGTSLICCNLLEEVNLSGNRINSLKDITN
ISCLRNLIALDLKDPMCHPNPVTLLCNYSTYVLYHMPSLKRLDSVDVSMK
MLKEAAESTVNKKRIFYKMRIRTIQRECIEMREQLKEHLENLREESVTSI
HKLSNATKELERELDELSTKPE

Run BLAST on NCBI

transcript from alignment at sc0000001:705893..711578-

Legend: exonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00000174 ID=TCONS_00000174|Name=TCONS_00000174|organism=Clytia hemisphaerica|type=transcript|length=5686bp|location=Sequence derived from alignment at sc0000001:705893..711578- (Clytia hemisphaerica)
GAATTTTTGATAATATTTAAAGCAAACATGGAAGAAACAAGTGCTGTTGA
AAAATCAGAGAGTAAAGCAAATCTTGGAGAAGATTACTGGCTGCAAGAAT
TGGTACGTATTTTTTTACTATGAATTAATAAGGTTTGTCTCTCTCGTGCT
ATTTACTTTACCAGCAGCGTTTAGCAACCCTCAGGTTTTTAGGGGTACCA
AACACAATGTCTTGAATGTATTTTTGATGTTATTTTAAAAACCATTTACA
GGGTGCACCAGGTTGGTCTCATCTTGAGCATAGGATAAGCAAATCTAAAT
TCATTGTTATCAAAAGACTACAATGTTTGTATGTGAGCTGCCTCTTCAAT
CTAGTCATTCTTCTTTAGGGCATATTGCTTTACTGTCATCAATAATTTCC
ATTATTTTTTCAGTGTTTATCCAATGGACTTGACCCTAAAAGTGATTTGT
CACAGGTGGAACTGCTTGAGCTTTTTCTTAGTGTTATACCAATGGTACCA
TCATTGAATACATATCCTTCTTTAACAATTCTACGCATTGTTGGTTGTAC
GATTACAAAAATTGAAAATCTTCATATTGTACCTAATCTGAAGGAACTTT
GGCTTTGTGAGGGAAAAATACAGGTTTGTTCTGATATTCCATAGTTTACT
TTTGTTTTTATGACAGGAAATAAGAAGTTGTTACTTTAATTCCTTAATTT
TCATTTTTCCATTTGCAAGTGCTATTCTATAGTTTTAAAGGGTCTAATGA
TCACCCACTTCTCAAGCCCCTAACATTAGAAAATGCCTTCCTTTTCAAAG
TTGAATAATACTTAGTCGTTCGACTCACATACCACTCACATACCTTACTA
GAAAGATCTTAATGATAAAGCGAACGTTTTGTCCTTAAAGAAAAAAAAAC
AAGAGGACAGAAAATATTCCTGATGAAGGATTCATTTCGATCCCTCATCC
AAAGAAACCCCCATTTCTCCTATTGTTTGATGAAAATCTTCTTTGTTTTT
TGGATTAAGGTGAACTTTCTCTTGATTCGATTTTATTTTTATTTTTTTCT
GATCTTTAGAAACTGGAAGGGCTTGAGAAGAACAGCAAACTGGAGAAGTT
ATATATGTACAAAAATGAGCTGAGTAAAATAGAAAATATATCCCATTTAC
TCACGTTGACAACATTATGGTTGAATAAAAACAAAATTGAAGTGATAGAG
GTACTATTGTCATCTTTAGTACTTTTGAGTTAGTAAGTTTTAGCAAAATT
TGCCAAAACTCTTCTAGTTCTAGTCAAAATTTAATTATCTGTAAATTTTG
TCCAGATTCTTCTTCGAAACACCTTAACATTTCTCTTTTTTTTCAACTAA
ACTTACAAAATGGTAGGTCATTTGTGAAAGTTAATTCATGCCAAATTTAA
CTGTCATTCTGCTAAATTCTGCTAAATTCTGCTCAATTGTACTAAGTTTA
ACTATTTTGGTTATTTGGCAAATGTTCTTCTGTCCAAAAGGTGGAAAGGC
CTCATCCTAGCAAGGTCAGAGTTAAGATAGTAATTTAAAGGTATATCAAC
AATTTAATTTTTTGATACACAGAAAGCAATTTAAGGACTACCAAAAGTTC
AAAATTTCATTCTTGTACCATTTTGTAGGAAGCTTTTGACTGATTAGAAG
CTAAGTCTCCGTTGCATTGGTTTCTGCGATAAAGATCAAACCATTGGGCC
ATTTCATTAAATGTCCATACAGGAGGGTAGACGAACCTTTTCAAGTCAAA
AAAAAAATTCTTGGAAATGTGTGGATTTCCCCTGGAAAATGGCATAATTT
GAAAAAAAAACCTCAAAAACTTTCCTTTCATACCTTAAAGTATCTAAAGT
TCTTCTACCCCCTGGGAATTTTGAAATAATTCTTTCCCCCCCCCCCCTCT
GTATGGATATGAAATATAATGTTGCCAAATGATGTTGTCCCACAGGTTTT
GGTAAATGTTTTTCTGTGTTTTGTTGTAAGAATATTTTATTGAAATACAG
AATTATTCTTTTACTCTTTAGAATATGGAACAATTACGACAACTCAAATT
TTTGAATTTGAGTGATAATCAGATACATAGTATTGGTTAGTTGTCATCAG
TTTTTTTGATTCATTAAAATTATAAAGTTCATGGCTCTTTGACGATTTTC
AACATTGTCTAATGTATTTGTTAGTCTCAAGATTACAATTATACGCTCTG
AATTTCCAAAAAATACACCTGGTCTAAATATTGAAATACCTCTTAAAAAT
AAAATTAGCTCCTCACATCTCTCTCAGTATTGATATTATCTTTATTGTCT
CTATTCAGGTACATCACTAATTTGTTGTAATCTGTTAGAAGAAGTGAATC
TATCTGGCAATAGAATAAATTCTCTCAAGGTATCATTTAGTATTGTTCTT
CAATCATTTAGAAATTGAAATGCAACCCAAACCTTCCTTTTTTTGATTAT
TGCTCAAAAAAGTAATGGAATTTAAACATGACATGAGATACATTCATGGA
ATAGTTATTATTTTAAGTATTATTTTGTAAAAGTCCCGCTCGAGTTCAAA
GAAGGAAACTTCAGACTTAAGTTTTCCTTGGTTATTATTGAATGCTACTT
CATTATTACACACACTATAGTTTTTCGACTTCTTAGTAAAACTTGACTCA
GAGTCATTTTCTTATTTAAAAATCCCTCAGTAACATTTCTTTTCCTCTTC
AAAAATTTTGTTCTCTTTTAGGATATTACCAACATCTCATGCTTGAGGAA
TCTCATAGCTTTGGATTTAAAAGATCCTATGTGTCATCCAAACCCTGTGA
CACTACTATGCAATTATTCCACCTATGTTTTGTATCATATGCCATCATTA
AAAAGATTGGATTCAGTTGATGTTTCAATGAAAATGCTGAAAGAGGCTGC
TGAGGTATTTTGATACCTTAAGTGGATTAATTAGTGTGGACTTTTTTTCG
CGAAACAAGAATCTAAAAAGTCTGTAGATTAAATCTTGCAAATCAGCCTC
TTTTTTTAAATTCCTTTTTTTTCCCTAGGGTTTTGGCCAAAATCTTGATT
TAATTTTTTTTGCAAGACTAAATTCCACAAAAAGGGCCAAACTCGCGAAA
ATTAATCCACGCAAAATTTAATCCACTTAAGGTATCTCCTTGTGGGAACT
CATAGAAAACAAGGAAAAAGTAACTATGGTCTTTTTCTACTTTGATGTGA
TGAATTCTTGTGAAGCTAGTCTTCAATCCTGGAGAATTTTTGTGGTCTTA
ATTTCACAGATGAGTGAAAAGCAATTTTTCATGGCGATAATTTCCACGAG
GGAGTTTTCTATTCATTGAAATGAGGAAGTGTGTATTTTCTCGAGAATTA
CATTATTTGCGGATGAAGCCTTTTTAAATTTCTCTCTTGAGTTATTTTTG
CAGAAATACGCATAATATAATCCCCGCAATGCGCAAAAAACTTATCTCAT
CAAAGCATCTAAAACACAAAAATTTCAATTCTAATGGTTATTAATGCATT
AGATCACCCATTATTTCTTTGATAGTCAATTTCATTGGAGAACATGGATG
ATTAGAATACAGTCCTCAATAAAAAACCTGAAATAAAATCTGCAATACAC
CCCAAAGCTTAATTTAGCAAATTCTGCAAACATTATATAGATAGCACTTA
GCAGATTGTATGGTTATGCAGGGCCCACGCTACTGAAAGGGAGGGGCCAT
GGCCCCCCTCACTTTTTTTAAATAGAATTTTATTGGTTAAATATCACGGT
TCATACTTTCGATAGCTTCGTTTCTAGGCAAATTCAGTCTNATAGAATTT
TATTTGTTAAATATCACGGTTCATACTTTCAATACCTTCGTTTCTAGGCA
AATTCAATACGAAATTGCGCTATTTAAACACTTTTTCTCCTTAGTCACTA
TATTTTTGGCCCCTCCATTTTCCGGATCATGGTATGGGCCCTGTTATTTA
GCTCTTATTCGTACATTTTATTTATCAAACTAAATCCTTTTCTCTTGCAG
TCAACAGTCAATAAAAAGCGTATCTTCTACAAGATGAGAATTCGAACCAT
TCAACGGGAATGTATTGAGATGCGTGAACAGCTTAAAGAACACCTTGAGA
ATCTACGTGAAGAATCTGTCACTAGTATTCATAAACTGTCAAATGCTACT
AAAGAGGTCTGTTTACATCATTACTACCCCAATGATACTTAGACTACACA
ATATATCGGTGATCAATATTCAACAATTTTGCTTGCGGACCGTAATGTAC
GAAGTAAACAACAGGTGCTCTATTATAAAAAGGAATTTTCTTTCTGTAAA
CAATCCCCCTATATTGTTGGAATATTGCAAATCGAGCTGAAAATATATTG
CGAACACCTTTTCAATATATTACCAGCATTCAACAATATATTCTCAATAT
ATTGCCCGACAATATATTGTGTAGTGTATATAGCCCTATAGAATGAGTAA
CTTATCAAAGTTATACTTGTAATAAAAAGGAAAAGTTATACTGCAAATAT
AACTGTCTCTCAAATTAGGTTACCCCTTTTCTTGTCATGGGTCATCAGAG
CTAGTCAGTCTCACCTTATTGTTATAGAGAAGGTAAAAAATTTCTCTTTA
AAAAGACAACCCACTTTTTACCCTCTTTAATTCACAATCAAAATAGACAG
GGAGAAAGTTGGCCATCTAAACTAGATCTTTATTACTTAACACCTATTAA
CCCAAAACGCCTCCAAGGATTTGGGTCGAGGTTATCAGGAGGCAAATACC
TTATCGGGGAAAAAAATGTCGGGGGAAAGTGACGAAAATTTTGAGGGGGT
GGCTAAATTTTTCCCCGACGAACTTTTTCCCCGATATTCTAACACCCGAC
CAAAACTTTTACCCAATTTTTCAACCCCCAACCAAAATTAAAATCTAAAT
TTTTTACACCTTTAATAACCGAAATTAGTGCTTTAAACGTCGAATTACAA
GATCTTTTTTCGCGCTAGTGAAGGAAACCATTTCATTTGGACAATTTAGT
TGGGTGAAAGTGACTTAATTGTAAATTTCGTCGGGGAAAAGTGACGAATT
TGAAATATTAGTCGGGGGAAAGTGATGCCTCTAGGTGACGAAATTTTTCC
CCGACGAAAAAAAACCCCGACTAAATAAAACTCCGACATTTTTTTCCCCG
ATAAGGTATTACATTTGATGTTAATCTTCCCTCCCTTCTTTAAAGTGTTA
AATTCAAAACTTTCTTATGGTGTCGGGGTTGATACTTTTATATATTGTAA
TCTATCAGTTACTACTTTAATCGGATTAAATTTCGCAACGAAAAAAATCG
CGAAATTTTCTGGATTTAATTTCGTAAGTCAGAGTTTTGAAAAATTTCAC
GTGGATTTAATTTCGCGAATAAGCCTGAAAACAGCTGAAAAATAGCCGTT
TTTTAACACAAATGGAGACTTCGGGCTGGTTTCTCCGCCGAAAATGCGAT
TTAAAAAATTTTGTGGTGGATTTAATTTGACGAGTCATAAATCTCACGCG
TTTTCGCGAGTTTTAATTTCGTAAAAATGGCATAAATTTTAATCTCGCGA
AAGTTAATCCGATTATGTCAATAGACTTTAATGATGTTTTAGGGTTGTAG
CAACAGCTGCTATGAATCAAATCATATAGTTCTCTTTCTTTTTCAGCTTG
AACGTGAGCTTGATGAGTTGTCAACTAAGCCGGAGA

Coding sequence (CDS) from alignment at sc0000001:705893..711578-

>TCONS_00000174 ID=TCONS_00000174|Name=TCONS_00000174|organism=Clytia hemisphaerica|type=CDS|length=966bp|location=Sequence derived from alignment at sc0000001:705893..711578- (Clytia hemisphaerica)
GAATTTTTGATAATATTTAAAGCAAACATGGAAGAAACAAGTGCTGTTGA
AAAATCAGAGAGTAAAGCAAATCTTGGAGAAGATTACTGGCTGCAAGAAT
TGTGTTTATCCAATGGACTTGACCCTAAAAGTGATTTGTCACAGGTGGAA
CTGCTTGAGCTTTTTCTTAGTGTTATACCAATGGTACCATCATTGAATAC
ATATCCTTCTTTAACAATTCTACGCATTGTTGGTTGTACGATTACAAAAA
TTGAAAATCTTCATATTGTACCTAATCTGAAGGAACTTTGGCTTTGTGAG
GGAAAAATACAGAAACTGGAAGGGCTTGAGAAGAACAGCAAACTGGAGAA
GTTATATATGTACAAAAATGAGCTGAGTAAAATAGAAAATATATCCCATT
TACTCACGTTGACAACATTATGGTTGAATAAAAACAAAATTGAAGTGATA
GAGAATATGGAACAATTACGACAACTCAAATTTTTGAATTTGAGTGATAA
TCAGATACATAGTATTGGTACATCACTAATTTGTTGTAATCTGTTAGAAG
AAGTGAATCTATCTGGCAATAGAATAAATTCTCTCAAGGATATTACCAAC
ATCTCATGCTTGAGGAATCTCATAGCTTTGGATTTAAAAGATCCTATGTG
TCATCCAAACCCTGTGACACTACTATGCAATTATTCCACCTATGTTTTGT
ATCATATGCCATCATTAAAAAGATTGGATTCAGTTGATGTTTCAATGAAA
ATGCTGAAAGAGGCTGCTGAGTCAACAGTCAATAAAAAGCGTATCTTCTA
CAAGATGAGAATTCGAACCATTCAACGGGAATGTATTGAGATGCGTGAAC
AGCTTAAAGAACACCTTGAGAATCTACGTGAAGAATCTGTCACTAGTATT
CATAAACTGTCAAATGCTACTAAAGAGCTTGAACGTGAGCTTGATGAGTT
GTCAACTAAGCCGGAG

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_000102	XLOC_000102	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00000174-protein	TCONS_00000174-protein	Clytia hemisphaerica	polypeptide

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000001	supercontig	sc0000001:705893..711578 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
8.28438	8.12422	4.34554	3.73296	13.0024	9.42675	16.6683	16.6187	9.82085	11.2853	8.29835	9.60081	2.30348	2.23055	1.9667	3.16586	2.70546	3.13314	2.18918	1.87431	3.98228	3.24472	3.81022	5.26924	15.7288	15.7867	2.75966	2.8082	3.22085	3.54618

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR032675	L_dom-like
IPR001611	Leu-rich_rpt

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

GO Annotation

GO Assignments

This transcript is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding

Blast

[Close]

BLAST of TCONS_00000174 vs. Swiss-Prot (Human)
Match: LRRC9 (Leucine-rich repeat-containing protein 9 OS=Homo sapiens GN=LRRC9 PE=2 SV=2)

HSP 1 Score: 208.764 bits (530), Expect = 1.581e-59
Identity = 139/300 (46.33%), Postives = 188/300 (62.67%), Query Frame = 1

Query:   70 NLGEDYWLQELCLSNGLDPK---SDLSQVELLELFLSVIPMVPSLNTYPSLTILRIVGCTITKIENLHIVPNLKELWLCEGKIQKLEGLEKNSKLEKLYMYKNELSKIENISHXXXXXXXXXNKNKIEVIENMEQLRQLKFLNLSDNQIHSIGTSLICCNLLEEVNLSGNRINSLKDITNISCLRNLIALDLKDPMCHPNPVTLLCNYSTYVLYHMPSLKRLDSVDVSMKMLKEAAESTVNKKRIFYKMRIRTIQRECIEMREQLKEH---LENLREESVTSIHKLSNATKELERELDEL 951
            NL ++  ++ELCL NGL  +    + S    LE+F    P +  L+ +P+LT L IV   I +I  L     LKELW+ E  I+K+EGL++   LEKLY+Y N++SKIEN+  L+ L  LWLN N I+ IE ++ L+ LK LNL+ N I+SIG  L     LE +NLSGN+I S K++TN++ L  L  L L DP    NPV LLCNYST+VLYH+P L+R D++DVS K +KE A++T  KK ++Y MRI+T+QR   E  E+L +    L+ L EE V      S   K LEREL EL
Sbjct:    6 NLNQEEIIKELCLCNGLSYEMVGQEGSDTSKLEMFFLGYPRIVGLSLFPNLTSLTIVAQDIKEISGLEPCLQLKELWIAECCIEKIEGLQECRNLEKLYLYFNKISKIENLEKLIKLKVLWLNHNTIKNIEGLQTLKNLKDLNLAGNLINSIGRCLDSNEQLERLNLSGNQICSFKELTNLTRLPCLKDLCLNDPQYTTNPVCLLCNYSTHVLYHLPCLQRFDTLDVSAKQIKELADTTAMKKIMYYNMRIKTLQRHLKEDLEKLNDQKCKLQKLPEERVKL---FSFVKKTLERELAEL 302

The following BLAST results are available for this feature:

BLAST of TCONS_00000174 vs. Swiss-Prot (Human)

BLAST of TCONS_00000174 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
LRRC9	1.581e-59	46.33	Leucine-rich repeat-containing protein 9 OS=Homo s...	[more]

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TCONS_00000174 (transcript) - C. hemisphaerica