TCONS_00009309 (transcript) - C. hemisphaerica

Overview
NameTCONS_00009309
Unique NameTCONS_00009309
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length363

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00009309 ID=TCONS_00009309|Name=TCONS_00009309|organism=Clytia hemisphaerica|type=transcript|length=363bp
gttttattCTTATTGACTGATTAaaactcaccctagagggtattcttagg
gtattcttacgatttggccaattttcaccctgatattcatATAGAAACCT
ATCNATCAGTAGCTGGACAAATGCAAGATAGTGTGGTACAGAAAAATGTC
ACACTAccgaaaccaaaacaaaaagttaaatatcttCCAAGGGATAATAC
CAATTGGAAAACTGTAGAAGTCATTTCTCGGGCTGGTAAAGCAAATGGAA
AATACAAACATTAGCTCAATATTAAAAATGAAGACAATACAGTCGAGTGC
ATTGATTGGAAGAACAGTGTTCAAGAATGGCATCCAAATGAATCAAGTGA
TGAGGAGGCTAAT
Run BLAST on NCBI

transcript from alignment at sc0000091:11487..11849

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00009309 ID=TCONS_00009309|Name=TCONS_00009309|organism=Clytia hemisphaerica|type=transcript|length=363bp|location=Sequence derived from alignment at sc0000091:11487..11849 (Clytia hemisphaerica)
ATTAGCCTCCTCATCACTTGATTCATTTGGATGCCATTCTTGAACACTGT
TCTTCCAATCAATGCACTCGACTGTATTGTCTTCATTTTTAATATTGAGC
TAATGTTTGTATTTTCCATTTGCTTTACCAGCCCGAGAAATGACTTCTAC
AGTTTTCCAATTGGTATTATCCCTTGGaagatatttaactttttgttttg
gtttcggTAGTGTGACATTTTTCTGTACCACACTATCTTGCATTTGTCCA
GCTACTGATNGATAGGTTTCTATatgaatatcagggtgaaaattggccaa
atcgtaagaataccctaagaataccctctagggtgagtttTAATCAGTCA
ATAAGaataaaac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005201XLOC_005201Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009309-exon-sc0000091-1491911889:11487..11849TCONS_00009309-exon-sc0000091-1491911889:11487..11849Clytia hemisphaericaexon
TCONS_00009309-exon-sc0000091-1510915933:11487..11849TCONS_00009309-exon-sc0000091-1510915933:11487..11849Clytia hemisphaericaexon
TCONS_00009309-exon-sc0000091-1575043694:11487..11849TCONS_00009309-exon-sc0000091-1575043694:11487..11849Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000091supercontigsc0000091:11487..11849 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.394476	1.29523	1.68747	2.94232	1.49958	1.46502	0.546232	2.09006	0.235667	0.297704	1.37591	0.81127	1.52068	0.761837	0.303272	1.2853	0.20515	0.910344	2.07507	1.66134	1.8583	2.6558	0	0.446299	2.07721	0.861617	1.59086	0	0.948728	1.3665
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00009309 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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