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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL61879_cuf2 >transcript:BL61879_cuf2-protein ID=transcript:BL61879_cuf2-protein|Name=transcript:BL61879_cuf2|organism=Branchiostoma lanceolatum|type=polypeptide|length=434bp
MDDKLLSLLVHFRLKNKDRCVLIGLTSVLSLIVLVFLAANFDLKARLAVS
TELQGHEHVDRADQLYSSDGRCRERTNFVFVKVHKCGSHTTTCILQRFGY
ERDLTFMLPAQDGPNIGYPRFPKTGDYLPSPNGVYNVIADHIRYKKDIVT
NLMPRDTAYFAILRHPLSHLKSVFNWKKLAGAFRIKAENPVGRFLDTPWY
YKRAYPGIVRYTRNLMAFDMGLDTSYFNRKHPHILNVNFPEQQYGKLPRM
SDVEKAKNLLDLDPQAADMLQQYITTIDRDFILVMILEYYDESLVMLRRL
MCWSIKDILYDLDVRNDKPYPYKYMDFTEVQKRNHQRWSAADYAFYEHFN
STLWKKISSEGPDFYEELDYFKFINKDVNWYCSMKLEITWTIPSSAWNEA
FVLNRTFCEWLVLKRWTWDGILKEKHIQKWWNVK Run BLAST on NCBI mRNA from alignment at Sc0000322:10899..15596- Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL61879_cuf2 ID=transcript:BL61879_cuf2|Name=transcript:BL61879_cuf2|organism=Branchiostoma lanceolatum|type=mRNA|length=4698bp|location=Sequence derived from alignment at Sc0000322:10899..15596- (Branchiostoma lanceolatum)
CAACAACAATAGTAGGGATCAGCACCCTCACGCAATATCAGACTGTATCT
GTATATATCCGATATAACCTCCCTTAGGCGTAACACACCAGCTTAAACGA
TGAGCAGTCGATGAGCAAGTATTTTTTTTGCACAAAGCTATGGATGACAA
ACTACTGTCGCTGTTGGTACATTTCAGGCTCAAAAACAAAGGTAAGTTGC
GTTACTATTCCGTCTACACGTCGCAGCCACTGCAAGGCTGAAGACCAGGT
GTCAACTTCTCAAACGTTGACATGAGAGCTTTCATTGTCTGGGTCACTAT
TGTCTACAAAACTACAGCACAATCGCAATTTGTATTGCGATGTATGCAAA
TCTATGTATACACATATCAAATCAAATCAGAGTGTTGTTAGTCAATATAG
ATTATCATCAATGGTCTCTCGTCAGTACCTTGTAGATATGTTTACGGACA
TGCACGTTTTCTGGTGAGAATAATGCCAAGACCAAACAGTGCACAGCCGT
ACCACACTCTTCATATCTATCCATCTATCATCTATTGATATATATTAATA
GAATGAAAGACCTTTATTGTACATTCGTTCCCGGGGGGCTAGGTACAGGT
CATCTAACATGAACCTAACTAATGTGTATAGGACATATATAGTGAAATAT
ATACAATACATAGCTTAGACATACATAATGGACAAAAGTGATAAACTAAA
CTTCTCCATTAGAGTCAACTTCTTGTATATGTAAGTGTGTTTGTGTCTTT
AGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG
TGTGTGTGTGTTTGTGTGTGTGTGTGAGTGTGTGTGTGTGTGTGTGTGAG
TGTGTGTGTGTGTGAGTGTGTGTGTGTGTGTGTTTGTGTGTGCGTCTCTG
TGTGTTTGTGCATGTGTGTATTTGCTTATAAGTATGTGTTTGTGTGTGTG
TCTGCGTGTGCGTTTGTATCTGCATCATGAATGAATGAAAAACAAACGAA
ACAGAATATCTCCTCTGTGTGAACGTAATTTCTCCCCACAGACAGATGCG
TTCTGATTGGACTGACGTCAGTGCTATCTCTGATCGTTCTTGTCTTCCTG
GCTGCCAATTTTGACCTGAAGGCGCGCCTAGCGGTCAGCACGGAACTGCA
GGGTCATGAACATGTGGACAGAGCAGACCAATTATACAGGTTTCTAATAA
TTTGTCAGAGCTTCATGCATGATGCAAAAATTGTGAATTTTGGATAGAAT
AGAAATTATAAGAAGTTAAAAACATGTTCACAAAATACAATACGCGTATT
TCGTCACAAGAAAATTCACATATTCAAAAGTGCGCCAAGATTATCTGTAG
TAGATAAGACTTCAGTATCATCCATGTACTAGCCACACTTCGAGCACGTT
AAAAAAAAACACCACACGTATCGAGAAGAGTACATGTCCTTCCAGGTGTA
AGTGGGTCAAACCTTACTGTATTGTCTTACGCTGCTTGTACATACTGTAC
AAAACTGGTGTGCCTAAAGTCGGCTTTAATACCGGTTGTACGAAACAAAT
CTAAATAAAAAGACATAATCTATATCAAGAGTAGATTGACTTGAATACAA
AACGTTCTGAAAGTAATTCTCTTTTTTGCCAATAAACAGTTCTGACGGAC
GATGTAGAGAGAGGACAAACTTCGTGTTCGTGAAGGTGCATAAGTGTGGG
TCTCACACCACCACGTGTATCCTACAGAGGTTCGGCTACGAGCGGGATCT
CACATTCATGTTACCGGCACAGGATGGACCGAATATTGGCTACCCACGTA
AGTTCATAGAGAACATTGCTATACTGTTTCAATGGTATGGAGTAGAACCT
GCGATAGGATATATTTGCCATTGTAGAGTTTAGGGCATTTGACCTAATAT
CAGAATGACGGTTATGCTTATGTTTGCAATATCAATGATAATCACACTAT
AAGTTACATTGTAAGTAAATTTAGTGACAATATAACAGGCCTAGGGGCAG
AAGCTTAAATGTAACTTGATGATTTTGCAAGTGATTTGCAGAATGATTTA
CATATTCAGTACCAGATACTTTCTATTACAACGAATATTTCAAGAGACTT
ACCAATCACAAAGGAACTGGTAAAGAACTGTTTGGTACTAGTTTGCAATT
AGATATATCATTTATCTGGAAGTTCAATCAAGAAAGTACATATGCATACT
GTTGACTTCCAAGAATCGATGTTCTAAAAATTTCAGTTTGTTTTCTAAAC
GTTGACGTCTGGTCCTTATACTACATAGTATAACTGCCAACGATGTCTGA
TAGACTCACCAAGGATGTATATTTATTTACGTAGGTTTTCCAAAGACCGG
TGACTACCTACCTTCTCCAAACGGAGTATACAACGTGATAGCAGACCACA
TCCGATACAAGAAGGACATCGTGACTAATCTTATGCCTCGAGACACAGCC
TACTTCGCCATCTTAAGACATCCCTTGAGTCATCTTAAGTCAGTTTTCAA
CTGGAAAAAGCTGGCAGGAGCTTTCAGAATAAAAGCTGAGAATCCCGTCG
GTAGATTTTTAGATACACCGTGGTACTACAAAAGGGCTTATCCAGGGATA
GTCAGGTATACAAGGAACTTAATGGCTTTCGATATGGGTTTAGACACTTC
TTATTTCAACCGAAAACACCCCCACATATTAAACGTAAATTTCCCTGAGC
AACAGTATGGAAAATTGCCAAGAATGTCCGACGTTGAAAAAGCGAAAAAT
CTCCTTGATCTTGATCCACAAGCAGCAGATATGTTACAACAATACATCAC
GACGATAGACCGTGACTTCATACTCGTGATGATTCTGGAATATTACGACG
AGTCGCTCGTCATGCTCAGAAGATTGATGTGTTGGAGCATCAAGGACATT
CTGTACGATCTAGACGTCAGAAACGACAAGCCCTACCCATACAAATACAT
GGACTTCACTGAGGTGCAGAAACGCAACCACCAACGATGGAGCGCAGCGG
ATTACGCTTTCTACGAACACTTTAACTCTACGCTATGGAAAAAGATTTCC
TCAGAAGGGCCTGATTTCTACGAAGAACTCGATTACTTCAAGTTCATAAA
CAAAGATGTGAACTGGTATTGTAGCATGAAGCTCGAAATCACTTGGACGA
TACCATCCTCAGCCTGGAATGAGGCTTTCGTATTGAATAGGACGTTCTGT
GAATGGTTAGTTTTGAAACGCTGGACTTGGGATGGCATACTCAAGGAAAA
ACACATCCAAAAATGGTGGAATGTAAAGTAAAAATGTTGGGCTATATTTT
CATTTGTTTCGAAACAGCAACTATTTCTACAGTCGACACATGGACAGTGT
ATTCTTCAAGGCCATCTACATAGAAAAATACAGCGTGGACGTCTTTTATA
AATACAAGCTATGGAAAAAGTATTATCGGTTTATTGATAAATCTATAAGG
TTATTCCAATGTACTCATTAACTGCAAAGCATTGCACAAACCTTGAACAG
ACATGTATCTGCTGTCTTTTGTATTTTGTGTATGCTTGTGGCACGACATG
CATGACATGTTTATGCCTATCTCTATAACGTTAGATCCTATATTCTCTAA
CGCCATCTACGTCCCATTACAGACGCACTGTAGAAAATAGCTAGATGTTC
TAACTGTTTGGATGAAGACCAATCATCATCATCATCATATTTTTGAGCTC
CATAATCTAAACTGTTTGTGTATTATTTGGGCTACAACAAAACCACCATC
TAGTGGCACAGTCCCTTTTTTCTACTTGAGAAACGTTGTTCCATGGCTTG
CTGCACAGGATACAGCCAACGACAGTCATATGAATAACCATAGGTGAACC
TCTCATTTCCTGACCTGGCCTATAAAAAGAAAGAAATTAGTATGAATGAC
GTGGTTTAAAGCAGAGCTGACGTTGTTTAATTTCCTTCATTGACGACCGT
TGTTCGTCAAATTTAGGCCTTCATCGTATGATTAGACAGTTGTATACAAA
TGTAGTGTACAGGATTTGCTTTACCTGCCAATGTTTCGGTAGTCCTGCTA
CCTTCCTCTAGGTAATAATTACCGGCGCTGTACTTTTCACATTCTCATTA
TTGCCTCAGGGAAGCAGACATAGCATAACTTCCGAAACGATGGCAGGTTA
CAGGAAATTTGTTGTGAACAAGAAATTTTCAATATCCCGTCATCTACCAA
ACTAGTTCATGGATAGACGTCATGTATTGGCAACCGCACAGACCAATTGG
TTATAAAACCAATTCAATTATGTAGTAGGTCTTGATATATATATATTGAT
ATGAATGTTAAAATTCTGACCTAGATTTGCCTGTGGTTTGTGCTATGGTC
AGTCGGGTAACCGGAAACGCAACTTTTTGTTCATCCTAGGCGTTACATCT
GCGCATCCGATAAATACCCCCACAGGATCAAGAATGTTGCTTGCTTGGTA
GCAAGAACCATTAACTACATTGCATTCGACTCGTGAGAACATGACTTTGT
TACAAAGATCGGTCAAACATATATCTATGAAAAAGATGAACCTTCGTCGA
ACATACAAGTGCTAAAAGTAAGAACAGTATCATCCACGTTAACGTTGTAT
TGAGACCAAAACTCAGTTCAAATGAAAATATAACAATGCTGTACTTGAGG
GGTAAAAGTCTGTGTTGTTTATTAATATCTCATTGGTTACCATCGGTG Coding sequence (CDS) from alignment at Sc0000322:10899..15596- >transcript:BL61879_cuf2 ID=transcript:BL61879_cuf2|Name=transcript:BL61879_cuf2|organism=Branchiostoma lanceolatum|type=CDS|length=5220bp|location=Sequence derived from alignment at Sc0000322:10899..15596- (Branchiostoma lanceolatum)
ATGGATGACAAACTACTGTCGCTGTTGGTACATTTCAGGCTCAAAAACAA
AGACAGATGCGTTCTGATTGGACTGACGTCAGTGCTATCTCTGATCGTTC
TTGTCTTCCTGGCTGCCAATTTTGACCTGAAGGCGCGCCTAGCGGTCAGC
ACGGAACTGCAGGGTCATGAACATGTGGACAGAGCAGACCAATTATACAG
TTCTGACGGACGATGTAGAGAGAGGACAAACTTCGTGTTCGTGAAGGTGC
ATAAGTGTGGGTCTCACACCACCACGTGTATCCTACAGAGGTTCGGCTAC
GAGCGGGATCTCACATTCATGTTACCGGCACAGGATGGACCGAATATTGG
CTACCCACGTTTTCCAAAGACCGGTGACTACCTACCTTCTCCAAACGGAG
TATACAACGTGATAGCAGACCACATCCGATACAAGAAGGACATCGTGACT
AATCTTATGCCTCGAGACACAGCCTACTTCGCCATCTTAAGACATCCCTT
GAGTCATCTTAAGTCAGTTTTCAACTGGAAAAAGCTGGCAGGAGCTTTCA
GAATAAAAGCTGAGAATCCCGTCGGTAGATTTTTAGATACACCGTGGTAC
TACAAAAGGGCTTATCCAGGGATAGTCAGGTATACAAGGAACTTAATGGC
TTTCGATATGGGTTTAGACACTTCTTATTTCAACCGAAAACACCCCCACA
TATTAAACGTAAATTTCCCTGAGCAACAGTATGGAAAATTGCCAAGAATG
TCCGACGTTGAAAAAGCGAAAAATCTCCTTGATCTTGATCCACAAGCAGC
AGATATGTTACAACAATACATCACGACGATAGACCGTGACTTCATACTCG
TGATGATTCTGGAATATTACGACGAGTCGCTCGTCATGCTCAGAAGATTG
ATGTGTTGGAGCATCAAGGACATTCTGTACGATCTAGACGTCAGAAACGA
CAAGCCCTACCCATACAAATACATGGACTTCACTGAGGTGCAGAAACGCA
ACCACCAACGATGGAGCGCAGCGGATTACGCTTTCTACGAACACTTTAAC
TCTACGCTATGGAAAAAGATTTCCTCAGAAGGGCCTGATTTCTACGAAGA
ACTCGATTACTTCAAGTTCATAAACAAAGATGTGAACTGGTATTGTAGCA
TGAAGCTCGAAATCACTTGGACGATACCATCCTCAGCCTGGAATGAGGCT
TTCGTATTGAATAGGACGTTCTGTGAATGGTTAGTTTTGAAACGCTGGAC
TTGGGATGGCATACTCAAGGAAAAACACATCCAAAAATGGTGGAATGTAA
AGTAAATGGATGACAAACTACTGTCGCTGTTGGTACATTTCAGGCTCAAA
AACAAAGACAGATGCGTTCTGATTGGACTGACGTCAGTGCTATCTCTGAT
CGTTCTTGTCTTCCTGGCTGCCAATTTTGACCTGAAGGCGCGCCTAGCGG
TCAGCACGGAACTGCAGGGTCATGAACATGTGGACAGAGCAGACCAATTA
TACAGTTCTGACGGACGATGTAGAGAGAGGACAAACTTCGTGTTCGTGAA
GGTGCATAAGTGTGGGTCTCACACCACCACGTGTATCCTACAGAGGTTCG
GCTACGAGCGGGATCTCACATTCATGTTACCGGCACAGGATGGACCGAAT
ATTGGCTACCCACGTTTTCCAAAGACCGGTGACTACCTACCTTCTCCAAA
CGGAGTATACAACGTGATAGCAGACCACATCCGATACAAGAAGGACATCG
TGACTAATCTTATGCCTCGAGACACAGCCTACTTCGCCATCTTAAGACAT
CCCTTGAGTCATCTTAAGTCAGTTTTCAACTGGAAAAAGCTGGCAGGAGC
TTTCAGAATAAAAGCTGAGAATCCCGTCGGTAGATTTTTAGATACACCGT
GGTACTACAAAAGGGCTTATCCAGGGATAGTCAGGTATACAAGGAACTTA
ATGGCTTTCGATATGGGTTTAGACACTTCTTATTTCAACCGAAAACACCC
CCACATATTAAACGTAAATTTCCCTGAGCAACAGTATGGAAAATTGCCAA
GAATGTCCGACGTTGAAAAAGCGAAAAATCTCCTTGATCTTGATCCACAA
GCAGCAGATATGTTACAACAATACATCACGACGATAGACCGTGACTTCAT
ACTCGTGATGATTCTGGAATATTACGACGAGTCGCTCGTCATGCTCAGAA
GATTGATGTGTTGGAGCATCAAGGACATTCTGTACGATCTAGACGTCAGA
AACGACAAGCCCTACCCATACAAATACATGGACTTCACTGAGGTGCAGAA
ACGCAACCACCAACGATGGAGCGCAGCGGATTACGCTTTCTACGAACACT
TTAACTCTACGCTATGGAAAAAGATTTCCTCAGAAGGGCCTGATTTCTAC
GAAGAACTCGATTACTTCAAGTTCATAAACAAAGATGTGAACTGGTATTG
TAGCATGAAGCTCGAAATCACTTGGACGATACCATCCTCAGCCTGGAATG
AGGCTTTCGTATTGAATAGGACGTTCTGTGAATGGTTAGTTTTGAAACGC
TGGACTTGGGATGGCATACTCAAGGAAAAACACATCCAAAAATGGTGGAA
TGTAAAGTAAATGGATGACAAACTACTGTCGCTGTTGGTACATTTCAGGC
TCAAAAACAAAGACAGATGCGTTCTGATTGGACTGACGTCAGTGCTATCT
CTGATCGTTCTTGTCTTCCTGGCTGCCAATTTTGACCTGAAGGCGCGCCT
AGCGGTCAGCACGGAACTGCAGGGTCATGAACATGTGGACAGAGCAGACC
AATTATACAGTTCTGACGGACGATGTAGAGAGAGGACAAACTTCGTGTTC
GTGAAGGTGCATAAGTGTGGGTCTCACACCACCACGTGTATCCTACAGAG
GTTCGGCTACGAGCGGGATCTCACATTCATGTTACCGGCACAGGATGGAC
CGAATATTGGCTACCCACGTTTTCCAAAGACCGGTGACTACCTACCTTCT
CCAAACGGAGTATACAACGTGATAGCAGACCACATCCGATACAAGAAGGA
CATCGTGACTAATCTTATGCCTCGAGACACAGCCTACTTCGCCATCTTAA
GACATCCCTTGAGTCATCTTAAGTCAGTTTTCAACTGGAAAAAGCTGGCA
GGAGCTTTCAGAATAAAAGCTGAGAATCCCGTCGGTAGATTTTTAGATAC
ACCGTGGTACTACAAAAGGGCTTATCCAGGGATAGTCAGGTATACAAGGA
ACTTAATGGCTTTCGATATGGGTTTAGACACTTCTTATTTCAACCGAAAA
CACCCCCACATATTAAACGTAAATTTCCCTGAGCAACAGTATGGAAAATT
GCCAAGAATGTCCGACGTTGAAAAAGCGAAAAATCTCCTTGATCTTGATC
CACAAGCAGCAGATATGTTACAACAATACATCACGACGATAGACCGTGAC
TTCATACTCGTGATGATTCTGGAATATTACGACGAGTCGCTCGTCATGCT
CAGAAGATTGATGTGTTGGAGCATCAAGGACATTCTGTACGATCTAGACG
TCAGAAACGACAAGCCCTACCCATACAAATACATGGACTTCACTGAGGTG
CAGAAACGCAACCACCAACGATGGAGCGCAGCGGATTACGCTTTCTACGA
ACACTTTAACTCTACGCTATGGAAAAAGATTTCCTCAGAAGGGCCTGATT
TCTACGAAGAACTCGATTACTTCAAGTTCATAAACAAAGATGTGAACTGG
TATTGTAGCATGAAGCTCGAAATCACTTGGACGATACCATCCTCAGCCTG
GAATGAGGCTTTCGTATTGAATAGGACGTTCTGTGAATGGTTAGTTTTGA
AACGCTGGACTTGGGATGGCATACTCAAGGAAAAACACATCCAAAAATGG
TGGAATGTAAAGTAAATGGATGACAAACTACTGTCGCTGTTGGTACATTT
CAGGCTCAAAAACAAAGACAGATGCGTTCTGATTGGACTGACGTCAGTGC
TATCTCTGATCGTTCTTGTCTTCCTGGCTGCCAATTTTGACCTGAAGGCG
CGCCTAGCGGTCAGCACGGAACTGCAGGGTCATGAACATGTGGACAGAGC
AGACCAATTATACAGTTCTGACGGACGATGTAGAGAGAGGACAAACTTCG
TGTTCGTGAAGGTGCATAAGTGTGGGTCTCACACCACCACGTGTATCCTA
CAGAGGTTCGGCTACGAGCGGGATCTCACATTCATGTTACCGGCACAGGA
TGGACCGAATATTGGCTACCCACGTTTTCCAAAGACCGGTGACTACCTAC
CTTCTCCAAACGGAGTATACAACGTGATAGCAGACCACATCCGATACAAG
AAGGACATCGTGACTAATCTTATGCCTCGAGACACAGCCTACTTCGCCAT
CTTAAGACATCCCTTGAGTCATCTTAAGTCAGTTTTCAACTGGAAAAAGC
TGGCAGGAGCTTTCAGAATAAAAGCTGAGAATCCCGTCGGTAGATTTTTA
GATACACCGTGGTACTACAAAAGGGCTTATCCAGGGATAGTCAGGTATAC
AAGGAACTTAATGGCTTTCGATATGGGTTTAGACACTTCTTATTTCAACC
GAAAACACCCCCACATATTAAACGTAAATTTCCCTGAGCAACAGTATGGA
AAATTGCCAAGAATGTCCGACGTTGAAAAAGCGAAAAATCTCCTTGATCT
TGATCCACAAGCAGCAGATATGTTACAACAATACATCACGACGATAGACC
GTGACTTCATACTCGTGATGATTCTGGAATATTACGACGAGTCGCTCGTC
ATGCTCAGAAGATTGATGTGTTGGAGCATCAAGGACATTCTGTACGATCT
AGACGTCAGAAACGACAAGCCCTACCCATACAAATACATGGACTTCACTG
AGGTGCAGAAACGCAACCACCAACGATGGAGCGCAGCGGATTACGCTTTC
TACGAACACTTTAACTCTACGCTATGGAAAAAGATTTCCTCAGAAGGGCC
TGATTTCTACGAAGAACTCGATTACTTCAAGTTCATAAACAAAGATGTGA
ACTGGTATTGTAGCATGAAGCTCGAAATCACTTGGACGATACCATCCTCA
GCCTGGAATGAGGCTTTCGTATTGAATAGGACGTTCTGTGAATGGTTAGT
TTTGAAACGCTGGACTTGGGATGGCATACTCAAGGAAAAACACATCCAAA
AATGGTGGAATGTAAAGTAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000322 | genome | Sc0000322:10899..15596 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL61879_cuf2 |
| Biotype | protein_coding |
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