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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL64778_cuf3 >transcript:BL64778_cuf3-protein ID=transcript:BL64778_cuf3-protein|Name=transcript:BL64778_cuf3|organism=Branchiostoma lanceolatum|type=polypeptide|length=257bp
MPRSERPTGHVMDELQRGLAELRATSSSTLHKVRGEIKEVNDRMRFHSDV
ERNGRRGRPRYCITSEQIDFLGYGERFSWSDTARMLGISRSTLYRRRHEF
GLTWSQYSNITDEALDRAVQEVRAGNHRMGTQMTEGALRATGISVTRERL
RQSQLRVDPDGSRLRWNPPVPRREYYVYVPNWLWHIDANLKLAGHRETRW
SIVIQGAVDGFSRLVPFVKATTRNTAERTCYSISFVGSSSMDGHRESGLT
VGRKTLG Run BLAST on NCBI mRNA from alignment at Sc0000596:20934..27480- Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL64778_cuf3 ID=transcript:BL64778_cuf3|Name=transcript:BL64778_cuf3|organism=Branchiostoma lanceolatum|type=mRNA|length=6547bp|location=Sequence derived from alignment at Sc0000596:20934..27480- (Branchiostoma lanceolatum)
TTTATCTTGACCTCTGTGTGTATCTTTGTCTCCTGATGACCAGGAGAGAT
GGTGTCAATTAACTTGCAACATAAAGATTTCACGGTAAGACCACCCCAGG
GCTACTGCCTGTTTGGTCTAACATACAGTGAGTACATGTACAATGAGAAT
CAGTAGCTTTTTATAGCGTGACCACTTTTGTATTTGATCTACTTGGCACA
CTGGGCACTTGGTGTGTAATGTTACTACATGTAACATAAAGGTGTAACTT
GATCAATCTTCATTTTCCATTATCTCAATAATTGGTGAAGAAATATTTAT
TTGAGATATTTTTTAACCCCCCGGCCACTGAAAAAAGATTGATACTGTTG
ACAATTTCATATACCATTGGACGAAAGTCTTGTCCTTGTTTCATTCAAAT
TGTCTAGTTTTACTTGTCCAAGAAATGTGTTTTTACTAAGACTGCCTGTA
ACTCATCCCTGAAACATTACCAAGAAGTATCAGTTTACTAAAATGACCTT
TTGACTCAGCCCCCCTCCTGACTTCCCCCTGCCCCAACTTTTAATTTACT
AGCAAAAGGCAACTAAACTCGGCACAAAAAGTTTGGAATATCAACATTGT
CTGATCATATTTCCGTTGTTTCTGCATCGATTTCAATGTGTTATATCAAT
AGAAAGCGTGTGTGATTTCCTTTCATATGGTATCAAACCTGTTATGAATA
TAAATTCGTGGAACGAGCACATGGGCTGCTTACGTCAGTGGGTTACCAAA
AAAAGTGCCCAAATTTCCCTTTTGGTGTGCAACGGGTGTTGTCCAGAAAC
TGTCAAAAGCGTTATATGATTATATTACGGCAAAGTTGCTTGGCATGTCA
GGTGCTGGCGTAGACTCCCTTGAAATAAGCCTGTTTTTTTTTCTACCATT
AGGCAGTCGTTGACATGGCAACGACCACGTACGTACTATGGACCTCCCCC
GACCTTTTTTCCGGCAACTAACCTTGAACCTAACCTGAAGTCACTCCTGG
CGTAACAACAGACACAACTGGTCTCCGTTAACACGAAAAGGCAGCCAGAA
TAGTGAATTTGACCAGATAATGAGACCACTCAAGGGCCCATTTCATGCAC
GACGTCGCCTACACAACGTCATAAATCAAACTAAGTGGGGCACAGGCGTG
GTCCGACTCACTGCCCATAGTCGGCCTACTGTCGAAGCCTTTCCCAGAGA
AAGTTCTTGATTACGCCGCAGTAGCGCTGTTGACTATTCTTCACAATGAT
GTCCTGGCGTGCCTTGGCTTTCGTTTTGATTGCTTTTGCTTGTCTGTTTG
CAGAGAAAGGTAGGACTGGACTTTCATTACTCGTTAGTCGTTGTTGAGTA
AGAGTGGACATCAGTAGGTACATCGAGTTAGGATGCATCGGTATTCACTG
AGAATGTGTGTGACATGTGTGCCAGTTTTTGATACTCTTTTGAGAAATTT
GTTAGGAAAGTAAACAGTTGTAATGACTTAATGATCAACAACGCGTGGAG
CATCTTGACCATTGATTGACTTCTGACATGACTTCGACATTGACTGTCTT
TTGCTTTTCTTTATCGGATTGTAGTAGACGCTGTTACGGTCTCGCCAGCA
GATATAGAGGCTCTCACTACGAGAGTAGAGGATATCGTCCGAGAGGCAGG
TGAAGCTCTGAACGGGGCATGCAGCCTGAAAAGTTTGCACCAGCTTTCCG
AAGAGTTGCAACGGGTGACCTCAAATATTGAGAGAACTGAGGCAGAGTTA
AGAACAATGCCACGAAGCGAAAGACCGACTGGACATGTAATGGATGAACT
TCAGCGCGGCTTGGCTGAATTGCGCGCTACGTCCAGCAGCACGTTGCACA
AGGTCAGGGGTGAAATAAAGGAGGTCAACGACCGAATGCGCTTTCACTCG
GACGTGGAGAGAAATGGAAGGAGAGGACGGCCACGTTACTGTATTACTAG
CGAACAAATAGACTTCCTGGGGTACGGAGAACGCTTCTCCTGGTCGGACA
CCGCGCGCATGCTCGGTAAGCAATCATCATGCTCAAAATGAATTCGATAA
CTTTCAATACCTTTCTATACAATTTCAGAAGATAGGTCCACTTTCTATCC
ACACACAGGGATGGCAAACACATGAGTACGGTTAGTGCTTATTATATGCA
ACTGTTAGAGAAACTGGCCAAACACTACCCATCATTATCAAACGGTTTTC
AACACTTGTACTATTCAGTGTGTTATGTACCATGGCAAACCAGACTTTTA
ATTTAGCCAGGGCCCGCAGAGAATTTGTTCGGCAGGCAAGGCAGATTTTC
CTGAGGACCTTAGATAAGCTGAACATACAGAGAGAGTTGGCCGGCAAACT
ATGGCAAACGACAAATCCCCGGAGTGCTTATTATCTAAGGTCATGCGGAA
AACCTGCTTTGCAATTGGGTGCCGAACAAATTGTTTGACGGTCCTGGCTA
AAAGTCTGATTTTCTAGGTTAGGCCACGGCGTCTAAGGTTTGAATAGCCC
AAAATGTCTTTATGGCACGTAGGCAGTAGGCAGGCAGGTCTTTATGGAGC
AGAGAAGATCTTTCCAAGGGCCCTCACTTCACGGCACTCTCTTTCCGATG
GAAAATTGGTCAGAGCGCCGTGAGAGTATTCTTCAAGCAGAGGTCGAGTC
GTGGTACTAAATTTCCCGACCGTACTACTAGTATATCTCCGCGACTAAAT
CTCTGCTTGGAGAGAGTAGGTGAGAGCGCCGCGACACAAAAGCTCTGGTG
GAGTCTCTCCAGCGACCCCAGCGCGACAAAAACTCAAATGTCAGCATCCT
TTTATGCCAATTATTAGAAAGATTATACTGAACGAAGCTTAATAAACGTT
TGGTATGTTTTGTTGTGACGTTGTATTTAAAGTCACAAGTATAAAGTAAA
GGCTTTAAAATCCGATTTCGATCCCTGTATAGTTGCCCAGCGTGAATCTC
AACTTATATACACGTTTGTCTTACTTTTTTTTCTTAAATCTGTCATGTCG
TGTGATTGTTGTACGAGTCAGATGCCATAGGCTTTCCAAGCAGGATGTGA
CGGAAGCAATTACCAACATGATTCCAAAACAGCCGTCTGTGTGGCTGTTG
AACTTTGCAGGACACGTGCATGGCTGTTCCAAATTAGCCTGAGTACCGTC
CTCCGTGGTGACCACTGGCTCAGTACTTTTGCTTGCTAACCACGCGAAAG
TACTGAGCATGCGGTTATTACGGAGGACGGTACTCAGGCTAATTTGGAAC
AGCCATGCACGTGTCCTGCAAAGTTCAACAGCCACACAGACGGCTGTTTT
GGAATCATGTTGGTAATTGCTTCCGTGATCTTTTAGGTACACACATTTAG
TATTGTTTCGTTCCTGGGGTGAAGGGGTCGTAGCTCAGGAGTGGGCTGCT
TAAAGTTTCCGTAACCGACTTTTTATCAACTACGGAATATCAAACTTAGC
ACACTTCTTGTTATTGAAACAGTCAATAATTGTCCCAAGTTTCGTATCTT
TTGGCTAGTAGAAAATCAGCCTAAAAACCTTTAGCTATAGCGTGCTTGGC
TAGTAATCAAACTGCCTGAAATATAACAACTCGCTTCATTCTGGCGGCTG
TAAAAGGTGACCATTGACAGTTCAGACATGAAATTTGGCATGTAATCTAA
TGAGGCATTTGTTATCATCAGGTAAAAAGCCAGCTTCTTGTAATAGTTTT
AAAAAGTTCAGATTTAAAGGAATTGATCTCCTGACAAGCTTCCAACCTTC
CATCTTTAACTCAACTCAGTCACTCAAAAAAAAAAACCCAACAAATTGAG
ATACATCAATCTCAAGAAGACATATGCCTTTACCTTTCTGAAAAAAATGA
GCCTGCCATAGTAAAAAACCGGTGTCATTCCTTTTTGAACGCCCCTCGTA
TGTGACCATGCCATAACCTTTTACGTTGCGTACCAATCATGATTCACGTA
TGTCAATTTGTTGTTCTTGTTTTTGTTGTTACTATCACCAGGTATCTCCA
GGTCTACGCTCTACCGTCGAAGGCATGAATTTGGACTGACATGGTCACAG
TATAGCAACATTACGGACGAGGCACTAGACAGAGCTGTTCAAGAAGTCAG
GGCAGGGAACCATCGAATGGGAACACAGATGACCGAAGGAGCTCTGCGTG
CGACAGGAATTAGTGTCACCCGGGAGAGACTTCGCCAAAGTCAACTTAGA
GTTGATCCCGACGGCTCTAGGCTAAGATGGAACCCTCCAGTGCCGCGGCG
GGAGTACTATGTTTACGTCCCCAACTGGCTTTGGCACATCGACGCAAATC
TAAAGTTGGCCGGGTATGTTGACGTTTGAGTTAAAAATTCAAATTTAGAT
AAGTAGTATTTACCGTGAAGCGTATACAGTAGAAGCCAGTTGATTGCACA
ACGGATAATCGCACACGTCATACCCAGATCTCTTTGTGGTGGTAAGACCA
CTTTTAATAACTTCGCTTTGAATTGCAATATTCGCATAATTGCATGAAAT
GCACTGGCAAATGGATTGTGCAATTAAGCGGCTTCTACTGTATCAAGGTC
TTTAAACATGGATTGTATCATGTTGATTTAAAATTATTTGTAGCGAAATG
GGAGACCCAGGAGGTCGTCCCTCTGGTCTCTGTTGGCATCTATAGTAAAC
CAGACGGTTCTGCCAATCAACCCGATCCCTTCCAATTTCAAGACCAATAG
AGCTAGAGCACCATTTTTGTAACCTATGCAACCATCAACCATTCTTGGAA
TTGAAAAAAAATCATACACTGTCTGTATCACGTCCCTGTGACAGTTTTCC
CAGCAAAACTTCTGTAGCCCTTTTCTGACAAGAATGCCAGGCGAAATTAA
GTCCGTCTTAAGCTAATTTGCCAATGTGGGTCACACACAACACCTAAATC
TCAGTTGAGGGGTCACGGTTGGGTTCTAAAAAACGACAGCTGATTTCGGA
AGGCTAAGCAAAAAATAAAAGCATAGTAGCAATAATAAATTCAATCATTA
ATTTTATTTGATTTTTCCTCAGCCACCGGGAAACACGCTGGAGTATTGTC
ATTCAAGGAGCCGTTGATGGGTTCTCACGGCTCGTACCGTTCGTAAAAGC
GACGACCCGCAACACAGCAGAGAGAACATGCTACAGCATTTCCTTCGTGG
GGTCAAGCAGTATGGATGGCCATCGAGAATCAGGACTGACGGTGGGCAGG
AAAACATTAGGATAAAAGAATTAATGACAGAAGTGAGGGGAGAACACCAC
CAGGCCTCTTTCGTGGGTTCATCTGTACACAACCAGAGGATTGGGCGTTT
CTGGCGAGATGTTAAGGAAGGTTGCACAAAAAAATACATGGATTTGTTTT
GGGAGATGGAAAGTCAAGGTGTCCTTAACCCCGACCGTTTTTCTGACATT
GCGTCTCTTCACTATGTTTTCATACCCAGAATAAACAGAGATCTGTCTGT
TTTTCAAGAAATTTGGAATCACCACAAACTACGAACTGAAAGATCTAGGA
CACCGAGACAGCTCTATTTTGAAGGATTTCTAATGAACTACAATTCAAAT
TACACGTCTGTTAACGAATATTTCCAAAACGACACTCCCAATCCTGACGA
CTATATTGACGAAACATTTAGTCCCCTCCGTTTGGATCTGCCTGATAATG
TATTGAGGGAACTGCAAGAAACAGTTGACCCTTTGTCACCCAGTCAGAAT
GGGGGAAGGGACTTGTACATGCTAGCACAAGCAGTGGTACAGAGAAATTT
GAATAATTAGAAAACATCTTTTGATATAGTTTTTGCACGCGAAAGGAGGC
CTTCTCGAGATTTGCATGATTGATAATGTGATGTACTGATTTTAAACAAG
TTCAACATAATCACACCCTACCCACCATTCACTAATATTGTTTGACTTTT
CTCCCCGTACTGATCAGAAATGAGACACTATTTTAAAAGAGTGAGATATC
GATCTGACAAATGTACCGATGAAGCCACAAAAGTAGTATTGATACATATA
AGGACCAGTATTTCTGATTGCATTCTTGTATTTGAAAAGGGAAAGGCAGA
AGTGTATCTGATTTTGTACTGCCCTGCACACCGGAGTAGTTTTTGGCTTG
CCGAGTACAGTTCATGTATCAAAACTGTTTTGCTCGCTTTTACTTGATGT
TTTGAACGTTTTGTGATATTAATACTATTCCTCTAAGTTTATTTGTCAAG
AAATTGTTGACAGTTCATAGACTGCATAGTGCTGTAGAGTGTTTTTTTAT
TGTTTATTGGAAATCATTGATATGCGGAAGTGCATCTACTCTGACTTCAT
ATATAAGTGTGTTGACGGTTTATAGATTGTTTATGGAATGTTTTCATTTT
TTTTTCAAAATCTGGTGTATTTGCCATGCATGAGTTTGGTGTAATGTACG
CTTTGTACACTGTTTTAGAACAGAAAACTAAAGTGGGCATTGATAATTCT
ATCATAAAGTGCAACAATTGTACAGTTTGTAGTGAACAGAGTTTTTGAGA
CTATTTTGCCTTTTTGTTGTTACATTAAGAACATGGATGCTTTGGAG Coding sequence (CDS) from alignment at Sc0000596:20934..27480- >transcript:BL64778_cuf3 ID=transcript:BL64778_cuf3|Name=transcript:BL64778_cuf3|organism=Branchiostoma lanceolatum|type=CDS|length=2322bp|location=Sequence derived from alignment at Sc0000596:20934..27480- (Branchiostoma lanceolatum)
ATGCCACGAAGCGAAAGACCGACTGGACATGTAATGGATGAACTTCAGCG
CGGCTTGGCTGAATTGCGCGCTACGTCCAGCAGCACGTTGCACAAGGTCA
GGGGTGAAATAAAGGAGGTCAACGACCGAATGCGCTTTCACTCGGACGTG
GAGAGAAATGGAAGGAGAGGACGGCCACGTTACTGTATTACTAGCGAACA
AATAGACTTCCTGGGGTACGGAGAACGCTTCTCCTGGTCGGACACCGCGC
GCATGCTCGGTATCTCCAGGTCTACGCTCTACCGTCGAAGGCATGAATTT
GGACTGACATGGTCACAGTATAGCAACATTACGGACGAGGCACTAGACAG
AGCTGTTCAAGAAGTCAGGGCAGGGAACCATCGAATGGGAACACAGATGA
CCGAAGGAGCTCTGCGTGCGACAGGAATTAGTGTCACCCGGGAGAGACTT
CGCCAAAGTCAACTTAGAGTTGATCCCGACGGCTCTAGGCTAAGATGGAA
CCCTCCAGTGCCGCGGCGGGAGTACTATGTTTACGTCCCCAACTGGCTTT
GGCACATCGACGCAAATCTAAAGTTGGCCGGCCACCGGGAAACACGCTGG
AGTATTGTCATTCAAGGAGCCGTTGATGGGTTCTCACGGCTCGTACCGTT
CGTAAAAGCGACGACCCGCAACACAGCAGAGAGAACATGCTACAGCATTT
CCTTCGTGGGGTCAAGCAGTATGGATGGCCATCGAGAATCAGGACTGACG
GTGGGCAGGAAAACATTAGGATAAATGCCACGAAGCGAAAGACCGACTGG
ACATGTAATGGATGAACTTCAGCGCGGCTTGGCTGAATTGCGCGCTACGT
CCAGCAGCACGTTGCACAAGGTCAGGGGTGAAATAAAGGAGGTCAACGAC
CGAATGCGCTTTCACTCGGACGTGGAGAGAAATGGAAGGAGAGGACGGCC
ACGTTACTGTATTACTAGCGAACAAATAGACTTCCTGGGGTACGGAGAAC
GCTTCTCCTGGTCGGACACCGCGCGCATGCTCGGTATCTCCAGGTCTACG
CTCTACCGTCGAAGGCATGAATTTGGACTGACATGGTCACAGTATAGCAA
CATTACGGACGAGGCACTAGACAGAGCTGTTCAAGAAGTCAGGGCAGGGA
ACCATCGAATGGGAACACAGATGACCGAAGGAGCTCTGCGTGCGACAGGA
ATTAGTGTCACCCGGGAGAGACTTCGCCAAAGTCAACTTAGAGTTGATCC
CGACGGCTCTAGGCTAAGATGGAACCCTCCAGTGCCGCGGCGGGAGTACT
ATGTTTACGTCCCCAACTGGCTTTGGCACATCGACGCAAATCTAAAGTTG
GCCGGCCACCGGGAAACACGCTGGAGTATTGTCATTCAAGGAGCCGTTGA
TGGGTTCTCACGGCTCGTACCGTTCGTAAAAGCGACGACCCGCAACACAG
CAGAGAGAACATGCTACAGCATTTCCTTCGTGGGGTCAAGCAGTATGGAT
GGCCATCGAGAATCAGGACTGACGGTGGGCAGGAAAACATTAGGATAAAT
GCCACGAAGCGAAAGACCGACTGGACATGTAATGGATGAACTTCAGCGCG
GCTTGGCTGAATTGCGCGCTACGTCCAGCAGCACGTTGCACAAGGTCAGG
GGTGAAATAAAGGAGGTCAACGACCGAATGCGCTTTCACTCGGACGTGGA
GAGAAATGGAAGGAGAGGACGGCCACGTTACTGTATTACTAGCGAACAAA
TAGACTTCCTGGGGTACGGAGAACGCTTCTCCTGGTCGGACACCGCGCGC
ATGCTCGGTATCTCCAGGTCTACGCTCTACCGTCGAAGGCATGAATTTGG
ACTGACATGGTCACAGTATAGCAACATTACGGACGAGGCACTAGACAGAG
CTGTTCAAGAAGTCAGGGCAGGGAACCATCGAATGGGAACACAGATGACC
GAAGGAGCTCTGCGTGCGACAGGAATTAGTGTCACCCGGGAGAGACTTCG
CCAAAGTCAACTTAGAGTTGATCCCGACGGCTCTAGGCTAAGATGGAACC
CTCCAGTGCCGCGGCGGGAGTACTATGTTTACGTCCCCAACTGGCTTTGG
CACATCGACGCAAATCTAAAGTTGGCCGGCCACCGGGAAACACGCTGGAG
TATTGTCATTCAAGGAGCCGTTGATGGGTTCTCACGGCTCGTACCGTTCG
TAAAAGCGACGACCCGCAACACAGCAGAGAGAACATGCTACAGCATTTCC
TTCGTGGGGTCAAGCAGTATGGATGGCCATCGAGAATCAGGACTGACGGT
GGGCAGGAAAACATTAGGATAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000596 | genome | Sc0000596:20934..27480 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL64778_cuf3 |
| Biotype | protein_coding |
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