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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL66890_cuf0 >transcript:BL66890_cuf0-protein ID=transcript:BL66890_cuf0-protein|Name=transcript:BL66890_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=381bp
VDFICRKAADYMKDKLDVTNCADVLMYADMLGDCGLVEASGRYIASRFHQ
VALQPSFLQLPLPLLQSLLNRDDLLTNSEDDVVQAALRWIDFEQEERLQH
LPKLCHSLRHSFISSNQLVELESKCPSADCKLVYSDSTIQRLGQTRTEMQ
IFLREVFPKLDSTRSAPCYDPSTGELYTINMPYNLDRVSVTVTPDDELYL
AGGRVTSREGYIRHKTFYQYNHLLNIWEPRCEMIAQRIRCGLVYLKGYIY
AIGGTGDHTKSKETAERYDPRCDEWTSIPPLPQRVSAELCAVTLDDNIYV
ISGEGCYRFSTTENMWNRIENVPELPLRPQAVTHQGSIYCVDCDKDWPET
KSTCLDMYNPAKGEWAYSFKSLLTFXHLKAC Run BLAST on NCBI mRNA from alignment at Sc0000016:3394922..3398023+ Legend: exonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL66890_cuf0 ID=transcript:BL66890_cuf0|Name=transcript:BL66890_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=3102bp|location=Sequence derived from alignment at Sc0000016:3394922..3398023+ (Branchiostoma lanceolatum)
GTGGATTTTATATGCCGGAAGGCAGCAGACTACATGAAGGACAAGCTTGA
CGTGACCAACTGTGCAGATGTGTTGATGTATGCTGACATGCTGGGGGACT
GTGGCCTGGTGGAGGCCAGTGGGAGGTATATCGCATCCAGGTTAGTCCGA
TGGCTGCCACACACAAACACATTATACAAGAGATTATATCTATTTTGATT
ATTGGATCGAGTGCGTAAAGAAGGACATTAAAGAGTGCGGCCTCACCAAC
GTGGACCCGCTGGACAGAGCCTCTTGGAAGCGCTGTGTGAACTGGCCGAC
TGCTGCCGACCCCTGTGTCAGGGAACCCCGCAGTAGTATAATCTAATACT
GGATACTACTACTACTACTAGTACTACTTCTACTTGATTGTTCGTTTCTA
AAGCAGGTATCTCACTGGACTACACCAAATGCGCCTCTACAAACAAAATC
ACCACACCTGGAATTTCACATTTTCAGTTTCAGTTCCAAATCAGCTAACT
TTATTGGAAATCTCAGGGTTACCACTGAATTAAAAACCACTGTACAATGA
TTAAAATTCATCAGAAAGAACTTCGCAGTGATTGCGCTGTTTCGCGCCAT
GGCATTTTGCAAATTGGTGCCCATTTTGCCACAATTCAATAAGATACCCT
CTTATTTCCGTGCACAGGGTATGACCTGATCCAGTTTAATTCAGCCCAAT
ACTCATGTAATTTCCCCAGGTTCCACCAGGTGGCGCTGCAACCCTCCTTC
CTCCAGTTGCCACTTCCACTGCTCCAGTCCTTACTCAACAGAGATGATCT
TTTAACCAACTCAGAAGACGACGTTGTCCAAGCTGCTCTGAGATGGATCG
ACTTCGAGCAAGAAGAACGCCTACAGCACCTTCCAAAACTTTGCCATTCC
TTGCGTCATTCCTTCATCAGCTCAAACCAGCTTGTGGAACTCGAGAGTAA
GTGCCCGTCAGCAGACTGCAAGTTGGTTTACAGCGACAGCACAATCCAGC
GGCTGGGACAGACACGAACTGAAATGCAGATCTTCCTGAGAGAGGTTTTC
CCGAAGCTTGATTCTACGCGGTCTGCCCCTTGCTATGACCCATCCACAGG
TGAACTGTACACAATCAACATGCCTTACAACCTGGACAGGGTGTCTGTGA
CAGTCACTCCTGATGATGAGCTATACCTGGCAGGGGGCCGTGTCACCAGT
AGAGAGGGTTACATCAGACATAAGACATTTTACCAGTACAACCATCTGCT
CAACATCTGGGAACCAAGGTGTGAGATGATTGCACAGAGGATCAGGTAGG
TGTTTCTCATTCAAGCTGCTAGCGCTGCTGTCACTAATGCCACTAACATA
AACATTTTCTAATTACAAGTAACCATGACCCATCATACATATTATTCAAT
GAACATAAATAAATGGATACACGATGGCAAAGGTATATGGTCTTGGAACT
CTAGTTTCTTCCTGTATCTGTCTTCCCAGGTGTGGTCTGGTGTATCTGAA
GGGGTACATCTACGCCATCGGTGGTACCGGTGATCACACTAAGTCTAAGG
AAACAGCAGAGAGGTACGACCCACGCTGTGACGAGTGGACGTCCATACCA
CCCCTCCCTCAGAGAGTGTCTGCTGAACTTTGTGCTGTGACCCTTGATGA
CAACATCTATGTCATAAGTGGCGAAGGCTGCTACCGCTTCAGTACCACAG
AGAACATGTGGAACAGGATAGAAAACGTGCCGGAACTACCATTGCGCCCT
CAGGCTGTTACGCATCAGGGAAGCATCTACTGCGTAGACTGCGACAAGGA
CTGGCCAGAAACAAAATCAACTTGTTTGGATATGTACAACCCTGCAAAAG
GCGAGTGGGCGTATTCGTTTAAAAGCTTGTTAACCTTCNTTCATTTAAAA
GCTTGTTAACCTTCAAAGCAGCAACCCTGATGAAATATGGAGGGGATATA
TACATCCTCACTGTGGGGGGTAGTGAGGATATACATCCTCACCTATGGGG
GGAGTCAAGGATTGCTGCCTATCAGTGCCAACCACAGACAGGCACTTGGC
GATGTCTAGAAGAAGACAGCAAGTTGGTTCCCCCCATGGTGCGGTGGTTG
GGTTCTGGGAATAGGACAGACTGCCTGACGGCAAGGATGGTCCCAAAGTG
CCTTGGGGAGCCGGGTTCATTCCAGGACGACGATCCAGAGAGCGATGTCA
GTTTGTCAGAGTCAGAGTCATCCAGAAGTGGAGTATCAGATGAAGATGAC
CTTTCGGACCAAGATGACAGCAACGAGGACAACACTGACAATGACTGAGA
GAGCGAAAGAGACAATGTTGATGTCTTAGACACTAGATCATCATAAAGAT
TTTTGTTGTTGTTGGTACACTTTTAATCAAAGGGGGCATTGCGAGGGAGC
AATCAGGGAAAGGGTTTGCCCTTTCCACGGGTTAGTTTTAGAATTCCAGT
CTAAAATGGGGCATTTTAAATTGAGGCTTCCAGACGAGCAAAATTACCTA
GGTGACAGTTAAAGACTGGCCACATTTGACCTTAGTACAAGTAGAATAGT
CAATCTGAATGTTATGCTTGCCAGCGAAACTGTTCTCTGGAGTAAGGCGC
ATGGTACTCCTCTTTTGAACAAAAAAAACCCTGGTTATGTTCAGAGCATG
GGATTCCGGCATCCTTTTACCCCTCTTTAGAAAAAAAAAATGTTGAAATT
ATTACAAAGGATTGGGATGATTGTGCTGATTTTATCATATTAAACTGTCT
GAGATTATGGAAGACAAAACTGATTGAGTCACCAATGGTAAGAGCTTGAA
GCAGAGCAAAGAGAAGTTTTTGAAGCAGTTTCTCGGTGTAATATGATCAA
ATCAGCGCACCCAAATCATGTAACAATCCTGATGTTACCCAATTACTTTC
AAGACCTGAACTTTTGACCTTGAGACAAGCCATCTTGCCAGTCTTCAGTT
ACACCATTTTCCGCTTCACATCCTGTCACTCTGTAATATTTGAGTAACAA
AGAACACACACCATCACAAACAAACAAAGAAACAAGCACACACATGCTTT
TCTCAGCAGTAAGAACTTAGTCTAAAAACCAGAAATAAAAACAAAGACAA
GG Coding sequence (CDS) from alignment at Sc0000016:3394922..3398023+ >transcript:BL66890_cuf0 ID=transcript:BL66890_cuf0|Name=transcript:BL66890_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=3438bp|location=Sequence derived from alignment at Sc0000016:3394922..3398023+ (Branchiostoma lanceolatum)
GTGGATTTTATATGCCGGAAGGCAGCAGACTACATGAAGGACAAGCTTGA
CGTGACCAACTGTGCAGATGTGTTGATGTATGCTGACATGCTGGGGGACT
GTGGCCTGGTGGAGGCCAGTGGGAGGTATATCGCATCCAGGTTCCACCAG
GTGGCGCTGCAACCCTCCTTCCTCCAGTTGCCACTTCCACTGCTCCAGTC
CTTACTCAACAGAGATGATCTTTTAACCAACTCAGAAGACGACGTTGTCC
AAGCTGCTCTGAGATGGATCGACTTCGAGCAAGAAGAACGCCTACAGCAC
CTTCCAAAACTTTGCCATTCCTTGCGTCATTCCTTCATCAGCTCAAACCA
GCTTGTGGAACTCGAGAGTAAGTGCCCGTCAGCAGACTGCAAGTTGGTTT
ACAGCGACAGCACAATCCAGCGGCTGGGACAGACACGAACTGAAATGCAG
ATCTTCCTGAGAGAGGTTTTCCCGAAGCTTGATTCTACGCGGTCTGCCCC
TTGCTATGACCCATCCACAGGTGAACTGTACACAATCAACATGCCTTACA
ACCTGGACAGGGTGTCTGTGACAGTCACTCCTGATGATGAGCTATACCTG
GCAGGGGGCCGTGTCACCAGTAGAGAGGGTTACATCAGACATAAGACATT
TTACCAGTACAACCATCTGCTCAACATCTGGGAACCAAGGTGTGAGATGA
TTGCACAGAGGATCAGGTGTGGTCTGGTGTATCTGAAGGGGTACATCTAC
GCCATCGGTGGTACCGGTGATCACACTAAGTCTAAGGAAACAGCAGAGAG
GTACGACCCACGCTGTGACGAGTGGACGTCCATACCACCCCTCCCTCAGA
GAGTGTCTGCTGAACTTTGTGCTGTGACCCTTGATGACAACATCTATGTC
ATAAGTGGCGAAGGCTGCTACCGCTTCAGTACCACAGAGAACATGTGGAA
CAGGATAGAAAACGTGCCGGAACTACCATTGCGCCCTCAGGCTGTTACGC
ATCAGGGAAGCATCTACTGCGTAGACTGCGACAAGGACTGGCCAGAAACA
AAATCAACTTGTTTGGATATGTACAACCCTGCAAAAGGCGAGTGGGCGTA
TTCGTTTAAAAGCTTGTTAACCTTCNTTCATTTAAAAGCTTGTTAAGTGG
ATTTTATATGCCGGAAGGCAGCAGACTACATGAAGGACAAGCTTGACGTG
ACCAACTGTGCAGATGTGTTGATGTATGCTGACATGCTGGGGGACTGTGG
CCTGGTGGAGGCCAGTGGGAGGTATATCGCATCCAGGTTCCACCAGGTGG
CGCTGCAACCCTCCTTCCTCCAGTTGCCACTTCCACTGCTCCAGTCCTTA
CTCAACAGAGATGATCTTTTAACCAACTCAGAAGACGACGTTGTCCAAGC
TGCTCTGAGATGGATCGACTTCGAGCAAGAAGAACGCCTACAGCACCTTC
CAAAACTTTGCCATTCCTTGCGTCATTCCTTCATCAGCTCAAACCAGCTT
GTGGAACTCGAGAGTAAGTGCCCGTCAGCAGACTGCAAGTTGGTTTACAG
CGACAGCACAATCCAGCGGCTGGGACAGACACGAACTGAAATGCAGATCT
TCCTGAGAGAGGTTTTCCCGAAGCTTGATTCTACGCGGTCTGCCCCTTGC
TATGACCCATCCACAGGTGAACTGTACACAATCAACATGCCTTACAACCT
GGACAGGGTGTCTGTGACAGTCACTCCTGATGATGAGCTATACCTGGCAG
GGGGCCGTGTCACCAGTAGAGAGGGTTACATCAGACATAAGACATTTTAC
CAGTACAACCATCTGCTCAACATCTGGGAACCAAGGTGTGAGATGATTGC
ACAGAGGATCAGGTGTGGTCTGGTGTATCTGAAGGGGTACATCTACGCCA
TCGGTGGTACCGGTGATCACACTAAGTCTAAGGAAACAGCAGAGAGGTAC
GACCCACGCTGTGACGAGTGGACGTCCATACCACCCCTCCCTCAGAGAGT
GTCTGCTGAACTTTGTGCTGTGACCCTTGATGACAACATCTATGTCATAA
GTGGCGAAGGCTGCTACCGCTTCAGTACCACAGAGAACATGTGGAACAGG
ATAGAAAACGTGCCGGAACTACCATTGCGCCCTCAGGCTGTTACGCATCA
GGGAAGCATCTACTGCGTAGACTGCGACAAGGACTGGCCAGAAACAAAAT
CAACTTGTTTGGATATGTACAACCCTGCAAAAGGCGAGTGGGCGTATTCG
TTTAAAAGCTTGTTAACCTTCNTTCATTTAAAAGCTTGTTAAGTGGATTT
TATATGCCGGAAGGCAGCAGACTACATGAAGGACAAGCTTGACGTGACCA
ACTGTGCAGATGTGTTGATGTATGCTGACATGCTGGGGGACTGTGGCCTG
GTGGAGGCCAGTGGGAGGTATATCGCATCCAGGTTCCACCAGGTGGCGCT
GCAACCCTCCTTCCTCCAGTTGCCACTTCCACTGCTCCAGTCCTTACTCA
ACAGAGATGATCTTTTAACCAACTCAGAAGACGACGTTGTCCAAGCTGCT
CTGAGATGGATCGACTTCGAGCAAGAAGAACGCCTACAGCACCTTCCAAA
ACTTTGCCATTCCTTGCGTCATTCCTTCATCAGCTCAAACCAGCTTGTGG
AACTCGAGAGTAAGTGCCCGTCAGCAGACTGCAAGTTGGTTTACAGCGAC
AGCACAATCCAGCGGCTGGGACAGACACGAACTGAAATGCAGATCTTCCT
GAGAGAGGTTTTCCCGAAGCTTGATTCTACGCGGTCTGCCCCTTGCTATG
ACCCATCCACAGGTGAACTGTACACAATCAACATGCCTTACAACCTGGAC
AGGGTGTCTGTGACAGTCACTCCTGATGATGAGCTATACCTGGCAGGGGG
CCGTGTCACCAGTAGAGAGGGTTACATCAGACATAAGACATTTTACCAGT
ACAACCATCTGCTCAACATCTGGGAACCAAGGTGTGAGATGATTGCACAG
AGGATCAGGTGTGGTCTGGTGTATCTGAAGGGGTACATCTACGCCATCGG
TGGTACCGGTGATCACACTAAGTCTAAGGAAACAGCAGAGAGGTACGACC
CACGCTGTGACGAGTGGACGTCCATACCACCCCTCCCTCAGAGAGTGTCT
GCTGAACTTTGTGCTGTGACCCTTGATGACAACATCTATGTCATAAGTGG
CGAAGGCTGCTACCGCTTCAGTACCACAGAGAACATGTGGAACAGGATAG
AAAACGTGCCGGAACTACCATTGCGCCCTCAGGCTGTTACGCATCAGGGA
AGCATCTACTGCGTAGACTGCGACAAGGACTGGCCAGAAACAAAATCAAC
TTGTTTGGATATGTACAACCCTGCAAAAGGCGAGTGGGCGTATTCGTTTA
AAAGCTTGTTAACCTTCNTTCATTTAAAAGCTTGTTAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000016 | genome | Sc0000016:3394922..3398023 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL66890_cuf0 |
| Biotype | protein_coding |
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