transcript:BL68257_cuf0 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL68257_cuf0
Unique Nametranscript:BL68257_cuf0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Full-screen view
Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL68257_cuf0

>transcript:BL68257_cuf0-protein ID=transcript:BL68257_cuf0-protein|Name=transcript:BL68257_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=596bp
MTLTVSLYILYIACLSITLPVCRNVSGDSLSLINSEVNRQLIKYKPSDGS
WTVIRTQTVLKRCLSWNQVCINKLFPHVMRTKSSCGYVNQASSHKLMLCV
MILLCGDVSCNPGPIDLHLPWKGLHIGHLNICSWRNKTQDIEELLDNNKL
HILALSETHLDSNICDSELCVDGWTVIRKDRNRHGGGVAILIRNSLPWKQ
RPDLEEENVEMLWIEVTLPQTKPMLICCTYRPPGSSIQTLNNFIVSTDRA
TDSHNEVFILGDFNIDWSNQLCPLRERLVQAAVRCNLLQTVKEPTRIGTN
NRGQRTETCIDLVFTNCSERCTPVSSVPLGFSDHNITYTTRKTKVPKAQP
RVVVRRTYGKFSPEDFQRDIEMAPWHLIYNESDVNMALHVFTTILSDVAN
SHAPVKKRTVRSSPAPWLDDELRELMHLRDEARRESISSRLESDVLVYKK
LRNTVVKLNRRKKAAFYRTKLEEAKHDPRSLWKTLNGMLGKGRSQPTCAV
EQDGVYLTKAEDIAEYFNHFFTQKVESLRNGLTSQMNDNLLTLIQKKIME
NKDCNFQFSPVHVEEVRSHLSSLPDGKAVGLDNLDNTLLRLAVEHI
Run BLAST on NCBI

mRNA from alignment at Sc0000426:180770..184129+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL68257_cuf0 ID=transcript:BL68257_cuf0|Name=transcript:BL68257_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=3360bp|location=Sequence derived from alignment at Sc0000426:180770..184129+ (Branchiostoma lanceolatum)
TGGGACTCGAACCTGATCGAGCCGAACCGGTATCCACCCCTATCCATCGC
AAGAGAGCACGTCATCCAAAAAAGCTTCTTTTTTTTAACAGAAAGTGAGA
GCACAGAATAACTTCCCTCTGTGTGTAAAAAAAAAAAAAACACACCCATC
GGCTAGAAGACTTTGTTTGCATGGATTTTGAACCATGCGCTGACCAATTT
TCTTTCATTATCAAACCTAAACTAAAGCCAAAAGCTTATTGCCAAAGTCA
CCAAGATTTGGTGACAAAATTTGACAGGAATTTGACTCAGGTAGATGGTT
GGCACTTGCTTATGAAATATGACAAAACATGTCTAATTTTTGTTCAATGC
AGAAAGTAATATTTGTCAAAACTGTGGAGTTGGTGGGTGTAAGCATTTAA
TGCACAAGAAAAAAATCTTGCCATCACCACAAAACATTTGCCCAGTTACA
AATTATTATCATTATCCTCTGTAAAAAAGGAACCCGCCCCAGGCGTTTCG
GACTGGTCCGAAGGTAGTTCAGACTGCGCGCCTAAGTCCAACCTGTCCGG
GGTGTGAGCCTCCCAGTTCGGACGCTCACCCGGTGAACCATCATTAAGTG
GTTCAGCGCGTTCGGTAGTTCAGGACTGCCCGGACGTTCTGGGCGCCATA
AACACTTAGAAAAGACGAGGTGCCCGCAATTTTTTCTAAGTCCCTAACTG
AGATCTACCCGTGCGGCAACGCCCCCTTGCGTACGCAAAGCGCAGCGACC
AGAACAGCAAGCGGTTAGGTTGATACAGACAACTTTGACTTACTACAAGT
AGTCGAGATCGCTGCATAGAATAGAGTGAACCGTACAAAAGGACAATAAT
CAATTTTACCATCTGTTCAGTTGTAAAACCCTTTTCTTTATGTTACGTAA
ACCCTTATCTTTACCCCAGACTATTTGCAAAAAATTTTATTTTTTTCCGC
CCTGTCGCTCCAATTTTTTCTGAAAAAATCCGAGAAGCAACAAATAAAAT
TGGTGTGGCCTAATAATAAAATGATATAACAATTTTCTTTGATCACTTGC
TTCAAGTTCCAAGTAGAATGTACATTTTCACTTGTTGAATTTGAAAGCAC
CGTAGCCCCCGGTTAGGGTCATAGCGGGGAACCTATGCCCAATTTTTGAA
CATATTTTACGAAGAGGCGAGGAAGATCATGATTTGAACAAGCTATGTAC
AGTTCTTCAATATCTATATACTTAATAGGTATGGTCCTGAGGCATAATTG
AATAGATATAACTTTTTTATAAGTTATAACCTACCTGCTTATTATCTTAT
TTCCCTCGGAAAGTTGTATATGTATGGACATAGTTTACCATATAGTAACC
TCGACTGTCAATTTTTTAAATTTTCCAGGGAGTACTTTTATTTCAGGGGG
TACTTATATTAGATTTTGAAGATTTGTCCGGGGTGTACTTCTATTTTAGG
GGCTACTTCTATTTGAGAATTGTCTCTTTTACCTGATACATTGCGAATTT
ACGATCCGCCGGCACCCATCGTAGGGTATAAGACTGTGAGTGCCATAGCG
ATCCTATATTTGGATTCAAAGATGACGCTCACTGTCAGTCTGTACATATT
ATATATTGCTTGCCTTTCAATAACCTTACCTGTATGCAGAAATGTTAGTG
GTGATAGTCTATCTCTTATCAACTCAGAAGTAAACAGGCAGCTAATCAAA
TACAAGCCGTCTGATGGCTCATGGACTGTAATAAGAACACAAACAGTACT
GAAGAGATGTCTTAGTTGGAATCAAGTCTGTATTAACAAATTGTTCCCAC
ATGTCATGAGGACAAAGTCTAGTTGTGGTTATGTTAATCAGGCTAGTTCT
CATAAACTCATGTTATGTGTGATGATACTGCTCTGTGGAGATGTCAGTTG
TAACCCTGGCCCAATAGATTTACATCTTCCTTGGAAGGGACTGCACATTG
GGCATTTAAATATATGCAGCTGGAGAAACAAAACACAGGACATAGAGGAA
CTACTAGACAACAACAAGTTGCACATACTCGCCTTGTCAGAAACTCACTT
GGACTCAAACATTTGTGACAGCGAATTGTGTGTAGATGGCTGGACTGTCA
TTAGGAAAGATAGAAATAGACATGGTGGAGGAGTGGCCATCTTAATCCGT
AATAGTCTTCCTTGGAAACAGAGACCAGATTTGGAGGAGGAAAATGTGGA
GATGCTCTGGATAGAGGTGACTCTGCCACAAACAAAACCTATGCTAATCT
GCTGCACTTACAGGCCTCCAGGCTCATCAATACAAACTCTCAACAACTTC
ATAGTTTCGACAGATAGAGCAACGGACTCACACAATGAGGTGTTCATTCT
GGGAGACTTTAACATTGACTGGTCTAACCAGTTATGCCCCTTGAGAGAGA
GGCTGGTTCAAGCAGCAGTAAGGTGTAACCTTCTACAGACGGTGAAGGAA
CCCACGAGGATTGGTACGAATAACAGAGGTCAAAGAACAGAAACTTGCAT
CGATCTAGTATTCACCAACTGCTCGGAGAGATGCACACCAGTATCCTCAG
TTCCCCTGGGATTCTCCGACCACAATATTACATACACAACAAGGAAAACA
AAGGTTCCAAAGGCACAACCTCGAGTAGTCGTGAGGAGAACATACGGGAA
GTTCAGCCCTGAAGACTTCCAGCGTGACATCGAGATGGCACCCTGGCACC
TGATATACAATGAATCAGATGTGAATATGGCACTTCATGTTTTCACAACC
ATCCTCAGTGACGTCGCAAACAGCCACGCACCTGTAAAAAAGCGAACAGT
GAGGTCCAGTCCAGCACCTTGGTTAGACGACGAGCTGAGAGAATTGATGC
ATCTCAGGGATGAAGCAAGAAGAGAATCCATCTCCTCTCGCCTGGAATCA
GATGTTCTTGTGTACAAAAAACTCAGAAATACTGTCGTAAAACTAAATCG
GAGGAAGAAAGCCGCCTTTTACAGAACCAAACTGGAAGAGGCCAAACATG
ACCCTAGGTCACTCTGGAAAACACTAAATGGTATGCTGGGTAAAGGCCGA
AGTCAGCCAACTTGTGCAGTTGAACAGGATGGTGTTTACCTAACCAAAGC
AGAAGACATAGCGGAGTACTTCAATCATTTCTTCACTCAAAAAGTAGAAT
CACTGAGAAATGGGCTAACCTCACAGATGAACGACAACTTACTTACCTTG
ATACAGAAGAAGATCATGGAAAACAAAGACTGCAACTTTCAGTTCAGTCC
AGTGCATGTTGAAGAAGTGCGCTCACACCTGTCGTCTCTACCTGATGGGA
AAGCAGTGGGTCTGGATAACCTGGACAACACACTGCTGAGACTAGCTGTC
GAACATATAG

Coding sequence (CDS) from alignment at Sc0000426:180770..184129+

>transcript:BL68257_cuf0 ID=transcript:BL68257_cuf0|Name=transcript:BL68257_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=1788bp|location=Sequence derived from alignment at Sc0000426:180770..184129+ (Branchiostoma lanceolatum)
ATGACGCTCACTGTCAGTCTGTACATATTATATATTGCTTGCCTTTCAAT
AACCTTACCTGTATGCAGAAATGTTAGTGGTGATAGTCTATCTCTTATCA
ACTCAGAAGTAAACAGGCAGCTAATCAAATACAAGCCGTCTGATGGCTCA
TGGACTGTAATAAGAACACAAACAGTACTGAAGAGATGTCTTAGTTGGAA
TCAAGTCTGTATTAACAAATTGTTCCCACATGTCATGAGGACAAAGTCTA
GTTGTGGTTATGTTAATCAGGCTAGTTCTCATAAACTCATGTTATGTGTG
ATGATACTGCTCTGTGGAGATGTCAGTTGTAACCCTGGCCCAATAGATTT
ACATCTTCCTTGGAAGGGACTGCACATTGGGCATTTAAATATATGCAGCT
GGAGAAACAAAACACAGGACATAGAGGAACTACTAGACAACAACAAGTTG
CACATACTCGCCTTGTCAGAAACTCACTTGGACTCAAACATTTGTGACAG
CGAATTGTGTGTAGATGGCTGGACTGTCATTAGGAAAGATAGAAATAGAC
ATGGTGGAGGAGTGGCCATCTTAATCCGTAATAGTCTTCCTTGGAAACAG
AGACCAGATTTGGAGGAGGAAAATGTGGAGATGCTCTGGATAGAGGTGAC
TCTGCCACAAACAAAACCTATGCTAATCTGCTGCACTTACAGGCCTCCAG
GCTCATCAATACAAACTCTCAACAACTTCATAGTTTCGACAGATAGAGCA
ACGGACTCACACAATGAGGTGTTCATTCTGGGAGACTTTAACATTGACTG
GTCTAACCAGTTATGCCCCTTGAGAGAGAGGCTGGTTCAAGCAGCAGTAA
GGTGTAACCTTCTACAGACGGTGAAGGAACCCACGAGGATTGGTACGAAT
AACAGAGGTCAAAGAACAGAAACTTGCATCGATCTAGTATTCACCAACTG
CTCGGAGAGATGCACACCAGTATCCTCAGTTCCCCTGGGATTCTCCGACC
ACAATATTACATACACAACAAGGAAAACAAAGGTTCCAAAGGCACAACCT
CGAGTAGTCGTGAGGAGAACATACGGGAAGTTCAGCCCTGAAGACTTCCA
GCGTGACATCGAGATGGCACCCTGGCACCTGATATACAATGAATCAGATG
TGAATATGGCACTTCATGTTTTCACAACCATCCTCAGTGACGTCGCAAAC
AGCCACGCACCTGTAAAAAAGCGAACAGTGAGGTCCAGTCCAGCACCTTG
GTTAGACGACGAGCTGAGAGAATTGATGCATCTCAGGGATGAAGCAAGAA
GAGAATCCATCTCCTCTCGCCTGGAATCAGATGTTCTTGTGTACAAAAAA
CTCAGAAATACTGTCGTAAAACTAAATCGGAGGAAGAAAGCCGCCTTTTA
CAGAACCAAACTGGAAGAGGCCAAACATGACCCTAGGTCACTCTGGAAAA
CACTAAATGGTATGCTGGGTAAAGGCCGAAGTCAGCCAACTTGTGCAGTT
GAACAGGATGGTGTTTACCTAACCAAAGCAGAAGACATAGCGGAGTACTT
CAATCATTTCTTCACTCAAAAAGTAGAATCACTGAGAAATGGGCTAACCT
CACAGATGAACGACAACTTACTTACCTTGATACAGAAGAAGATCATGGAA
AACAAAGACTGCAACTTTCAGTTCAGTCCAGTGCATGTTGAAGAAGTGCG
CTCACACCTGTCGTCTCTACCTGATGGGAAAGCAGTGGGTCTGGATAACC
TGGACAACACACTGCTGAGACTAGCTGTCGAACATATA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL68257gene:BL68257Branchiostoma lanceolatumgene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL68257_cuf0-E1BL68257_cuf0-E1-1564476830-463050Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL68257_cuf0transcript:BL68257_cuf0-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000426genomeSc0000426:180770..184129 +
Properties
Property NameValue
Transcript idBL68257_cuf0
Biotypeprotein_coding