transcript:BL69641_cuf0 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL69641_cuf0
Unique Nametranscript:BL69641_cuf0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL69641_cuf0

>transcript:BL69641_cuf0-protein ID=transcript:BL69641_cuf0-protein|Name=transcript:BL69641_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=128bp
ELRTEVVPTPHMTSGDGSREEVSILRESLATPKQELRVAAWNVRTMFETG
KTLQVVKEMERYSLNILGVSEMSWLDSCRPQMEPSRETKERQASWDLEEN
CRGRDEGCEEDMARSQMDGPRQEGLERV
Run BLAST on NCBI

mRNA from alignment at xfSc0003399:80..466+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL69641_cuf0 ID=transcript:BL69641_cuf0|Name=transcript:BL69641_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=387bp|location=Sequence derived from alignment at xfSc0003399:80..466+ (Branchiostoma lanceolatum)
GGAGCTGAGGACTGAGGTAGTACCAACACCTCACATGACGAGTGGAGATG
GAAGCCGCGAGGAAGTTTCCATTCTGAGGGAGTCTTTGGCAACGCCCAAA
CAAGAATTAAGAGTCGCAGCTTGGAATGTGCGCACTATGTTTGAGACAGG
CAAAACACTACAAGTCGTTAAAGAGATGGAAAGATACAGCTTAAACATCC
TGGGTGTAAGTGAAATGAGCTGGTTAGACTCATGTCGCCCTCAAATGGAA
CCCTCAAGGGAAACGAAAGAGAGGCAGGCCTCTTGGGACCTGGAGGAGAA
CTGTAGAGGGAGAGATGAAGGATGCGAGGAAGACATGGCACGAAGTCAGA
TGGATGGCCCAAGACAGGAAGGGCTAGAGAGAGTTCG

Coding sequence (CDS) from alignment at xfSc0003399:80..466+

>transcript:BL69641_cuf0 ID=transcript:BL69641_cuf0|Name=transcript:BL69641_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=384bp|location=Sequence derived from alignment at xfSc0003399:80..466+ (Branchiostoma lanceolatum)
GAGCTGAGGACTGAGGTAGTACCAACACCTCACATGACGAGTGGAGATGG
AAGCCGCGAGGAAGTTTCCATTCTGAGGGAGTCTTTGGCAACGCCCAAAC
AAGAATTAAGAGTCGCAGCTTGGAATGTGCGCACTATGTTTGAGACAGGC
AAAACACTACAAGTCGTTAAAGAGATGGAAAGATACAGCTTAAACATCCT
GGGTGTAAGTGAAATGAGCTGGTTAGACTCATGTCGCCCTCAAATGGAAC
CCTCAAGGGAAACGAAAGAGAGGCAGGCCTCTTGGGACCTGGAGGAGAAC
TGTAGAGGGAGAGATGAAGGATGCGAGGAAGACATGGCACGAAGTCAGAT
GGATGGCCCAAGACAGGAAGGGCTAGAGAGAGTT
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL69641gene:BL69641Branchiostoma lanceolatumgene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL69641_cuf0-E1BL69641_cuf0-E1-1564476830-531092Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL69641_cuf0transcript:BL69641_cuf0-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
xfSc0003399genomexfSc0003399:80..466 +
Properties
Property NameValue
Transcript idBL69641_cuf0
Biotypeprotein_coding