transcript:BL70111_cuf0 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL70111_cuf0
Unique Nametranscript:BL70111_cuf0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL70111_cuf0

>transcript:BL70111_cuf0-protein ID=transcript:BL70111_cuf0-protein|Name=transcript:BL70111_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=151bp
KKSTSFNVTEDFLKLIPNETPLKDRHFNTCAVVGNSGIVLNSSCGQEIDS
MDFVIRCNLPQIEGYEKDVGSKANFTTMNPSVVSHDFGQWRNKTKDDYDR
LLRRLKQVGDQILYVPVLTSPFGEEYARVIIQILFKHKLQMKTAFPPAGI
N
Run BLAST on NCBI

mRNA from alignment at Sc0000023:1520465..1520919-

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL70111_cuf0 ID=transcript:BL70111_cuf0|Name=transcript:BL70111_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=455bp|location=Sequence derived from alignment at Sc0000023:1520465..1520919- (Branchiostoma lanceolatum)
CAAGAAGTCGACCTCATTCAACGTCACCGAGGACTTTTTGAAGTTGATCC
CAAACGAAACACCTCTGAAGGACCGCCATTTTAACACGTGTGCAGTCGTG
GGCAACTCTGGGATTGTGCTGAACAGTAGCTGTGGTCAAGAAATCGACTC
CATGGACTTCGTCATACGGTGTAACCTGCCTCAAATCGAAGGTTACGAGA
AAGATGTCGGCTCCAAAGCGAACTTCACAACTATGAACCCGTCGGTGGTC
TCGCATGACTTTGGACAATGGCGCAACAAAACAAAGGATGACTACGATCG
GCTGTTGCGGCGCCTGAAACAAGTTGGCGACCAGATCTTGTATGTGCCCG
TTTTAACGTCCCCCTTTGGAGAGGAGTACGCGAGGGTTATCATACAGATT
CTTTTCAAACACAAACTGCAGATGAAGACTGCTTTTCCACCGGCGGGAAT
CAATA

Coding sequence (CDS) from alignment at Sc0000023:1520465..1520919-

>transcript:BL70111_cuf0 ID=transcript:BL70111_cuf0|Name=transcript:BL70111_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=453bp|location=Sequence derived from alignment at Sc0000023:1520465..1520919- (Branchiostoma lanceolatum)
AAGAAGTCGACCTCATTCAACGTCACCGAGGACTTTTTGAAGTTGATCCC
AAACGAAACACCTCTGAAGGACCGCCATTTTAACACGTGTGCAGTCGTGG
GCAACTCTGGGATTGTGCTGAACAGTAGCTGTGGTCAAGAAATCGACTCC
ATGGACTTCGTCATACGGTGTAACCTGCCTCAAATCGAAGGTTACGAGAA
AGATGTCGGCTCCAAAGCGAACTTCACAACTATGAACCCGTCGGTGGTCT
CGCATGACTTTGGACAATGGCGCAACAAAACAAAGGATGACTACGATCGG
CTGTTGCGGCGCCTGAAACAAGTTGGCGACCAGATCTTGTATGTGCCCGT
TTTAACGTCCCCCTTTGGAGAGGAGTACGCGAGGGTTATCATACAGATTC
TTTTCAAACACAAACTGCAGATGAAGACTGCTTTTCCACCGGCGGGAATC
AAT
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL70111gene:BL70111Branchiostoma lanceolatumgene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL70111_cuf0-E1BL70111_cuf0-E1-1564476830-155343Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL70111_cuf0transcript:BL70111_cuf0-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000023genomeSc0000023:1520465..1520919 -
Properties
Property NameValue
Transcript idBL70111_cuf0
Biotypeprotein_coding