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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL70182_cuf1 >transcript:BL70182_cuf1-protein ID=transcript:BL70182_cuf1-protein|Name=transcript:BL70182_cuf1|organism=Branchiostoma lanceolatum|type=polypeptide|length=174bp
MSNCRPQFFVSSTGNCFVFSRRPHHHSVAALVVMVASLLTLTDALKSGMG
LCITGECLNGGTPREDGTCLCPENVRGTCCEAINKMPYAPLLSRTIAKVP
ICVKCFHGGTRYYSNVHAGYKCLCPPYHDGTCCEVQEGSYNSHAQMYLWM
SVATSGIVLLLVCLCVLCVCKRLD Run BLAST on NCBI mRNA from alignment at Sc0000043:2042469..2048545- Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL70182_cuf1 ID=transcript:BL70182_cuf1|Name=transcript:BL70182_cuf1|organism=Branchiostoma lanceolatum|type=mRNA|length=6077bp|location=Sequence derived from alignment at Sc0000043:2042469..2048545- (Branchiostoma lanceolatum)
CTCAGGAGAGCCCCTGTCTCTATCTGTGATAGTGCCGCGATGACACAATG
GGGACAGACAGTTTATGCCGTGGCTTAAGCGTATGTGCCTTGGATCTCCG
ATGACGGCACCATCCAAGTAAGATGTCGAACTGCAGACCGCAGTTCTTTG
TCTCATCAACGGGAAACTGCTTCGTATTTTCACGAAGACCACATCACCAT
TCGGTGGCTGCTTTGGTTGTGATGGTCGCCAGTCTTCTGACACTGACAGG
TTAGTTTGGGCATCTCTCAAAGCAGGCTTTCCTTATGTACATGTGTCATC
CCATTGTGTGAGATCTTATGTTTCGAAATGGTCTTCCGTTGTCCATACAG
CTTCTCTCCATTCCCCAAAGGGGTTTGGTCACATCCCAGAGGCAAATGCC
TTACGTAATTGATGTACAATCCTATCAGCAAAGCTATGACGTTATGTTAG
TTAAGGCCAGCAACCTTTTACCTTTAGATTAATACGACAGAGGATTCAGC
ACCAAGGTCAGGACTAAAAAAATTGATAATTGACATTTACGTTCCACTTT
TCCGCATGGATTGTTCCCTTTATATAACCTTTATCTTGCTGTTTTGATAT
GTTTGTGCATTTATGTTGTCAAATATGTTTTTGCTTATGCACCTCTTGTT
TGTTATTGAATAAGATGTAGCGTATATTTAATCACCGTTAATTGCAAACT
CCTTACAAATGATGACACATTCGTCATTCTGATATTAATCAGCCTGCACG
GGTATTTGTTTGTCTATTACAATAAATCTTGCTCAAACACAAAAGAACTA
TGATTACTGTTACATCAAATTTTATCGATTTTGACCTAAATGACTGGATT
TTGGGACAGATACAGGAGCAAATAGTCAACTGTTTGCTGGCCCGTCCATT
GAAAAATGTCTTAGACAACAATCCAAGAAAACAAATTATGACGACGACTT
TAAAACGAGTTGTTTATACAGTAATAACAGTTCATATATAATAAGAACAG
CAGAGATAACTTGTTGCTCAATATATGCATACGATACAACGTATGGCAAC
TTTTACAACAATTATAGAAACTAATATTGCTCTACAAAAGACTATATATG
AAGTATGCCCCTTCATTCGATATTCATGATCACCTTTAACTTTTCTACAG
ATGCATTGAAGAGTGGCATGGGGTTGTGTATCACCGGAGAGTGCCTTAAC
GGAGGTACTCCTCGGGAAGACGGGACTTGTTTGTGCCCAGAAAACGTAAG
GGGCACGTGTTGCGAAGCTATCAACAAGATGCCCTATGCCCCGCTGTTGT
CTAGGACTATAGGTGAGTTTCAAACTTCAAACTTTAGTTTTTGTAGTTAC
TTGTACTGAGGATAGCGTGAATTCAGGACTGCTCTCAGCCTTCCGTTATT
TTGATTTTTTTCTAGGAACTTTCATTTCACACTCGATGAACACGACAAAA
ATATTATTCTATTTGCGTGTTTTGAACTGCTACGCATGTCGACGCTTTGA
GTGTAGACCATTTCATATACTAGTATTGATTATGTGTAGACCAACCTTGG
TACTTCCTGGAGGCTTTCTACACGCTATGATGTGTAACAATCGTGGGAGT
ACTGCCTACGATACTAGCCTCCACCAGGCCTTCCTACGGGGCTGACTGTT
AAACGCACGTCAATGTTTCTTATCAGAAGAAAACACATTTTCACAGGCAT
TCTGATGGCATCTTACCCTAAGGGAGAGTGTGCACAGAGGGTAATTGCTC
TACATGACCTTCATTGCACTCTGGGTGGTATTCATGCCACAAAACAGCTG
TAAAACTGTCATTTTTAATAGAGAGATTCTATATATCAAGATATATAGAC
ATTGAAAAATTCCCTAAATGATCAATAAAGATGAATAAGCAATATAAAAA
ATGAATACACAGAATTATGAGTAATATGACGCTGTAGTGTTATCTGATAC
ATGCCCTACAACGTCATATTACTCATAATTCTGTATATTCATAGTTTCAT
ATTATATGTTCATCTTTATTGATTATATAGGGATATTTATCATGTAAACA
CATCGTCATTAGCTAGTACGAGAGATTTTGATCAAACCTTAAAGTTGCAA
AACTTGACATTGTGTTTATTTTCATTTTGAAGTCGATAGACATCGATTTC
GTGTTCTCAAAATCAATGGGACTACGCCTAAGGGCACAGCTATACAACAT
CTGAAGGCTTAGATAAGAAAGATAGGAATAGTGATGTCGATATATTGAGG
TCCTTATAGACAAGGAAATGACCAACTGATCACCCAAAGAGATTCGTCAT
CTGCACCATGTTTGACATTTTTGGGTCACCGTTTTACATTTCCTAAGATT
TCCGCTACTCAGAATATCATGACAGACCCCGAAGTTAACCCTAGGTATAA
GGCCACGATGACTTGATTATATGAATGACATCCGTATATATGCGCATCAA
TTTGCATCCATTAAAAAAACGTTTGGACCATAATATAAATCGTACGAAGA
AGCTGCAAAATGAGCAAATATATGCCGTCGACTGCACAAAATATCGGTAA
ACGGATACCATTGTCATAAATTGCCTCTTTTCCCATCGTAAAACGTAGTG
GTTTTGTCATAAACTTACTCCTTGCACAAAATGTATTTCGAGGTCTTAAT
TATTAGGGACAGTTTCTAAAGTCTTCCAAAATACGTGAAAGAACAAACAT
AAAGAATTTTTTTGTTTGGTATGCCAAGTTCTGTAAGTTAGGTCCTTTAT
AAAACCACTTAGATTTCATAATGAAGGCAACGTAACGTTTTTTACCCAGC
TTTTATTTTTTTCGCACGCTCGCACGGATCAATTTGCGCCCATGAGATGC
CATCCATATATTCAAATCAGTGTGGCCTAATGGTAAAACGTGAAATCATT
GACTGACTGATTGATTGATTGATTGATTGAAAAAGGTAAATGACATTACA
TTGTAACAATTTGAATGTTTCCAATGAAGTCATCGTCAGAAAATATACCA
GATAAGAAACTGATGCAGAAAGCAATGGTACACTTGCATCAGTCATATAC
TAACTGTAGCTCAATTTGTCTTGTTCTATCCATGTATAGCCAAAGTGCCA
ATATGTGTGAAGTGCTTCCACGGTGGAACCAGGTACTACAGCAACGTCCA
CGCTGGATACAAGTGTCTCTGTCCGCCGTACCACGATGGGACCTGCTGCG
AAGTTCAAGGTGATCAATCAAGTTGTCATATTATCATAAAACCCTTGCCA
TATTATCATAAAACCCATCTGTGTTGGCGGTCAACATAATCAACAGCTAA
ACAGCGTTCCAACGCAAGGAAGATGCCCCGCCGAATTTTCGGTTGTCCGT
ACTGCATGCTTCATCAAGTTCGAATGACCTATCACTTTAGACACGTGACT
TTACGTCAGTAGTAACAGGGAGTCTATACCGACCCCTGGCCGTGTTAGTG
ATGGCTGGTATGTACTGGGGTACCTCCTGTTGCAACATTTTCTCAAGAAG
AACGGGGCCGTTATTCTTTTTTCTTGAAAAGAATCAGAAGTTTGTATTTG
CCTTTCTTTTGTCAACGCTTCAACTTCAGAATCAATACGCACTAAATCTG
GCTCTAAATTTTACACACAGGATACGTAGTAGTACAAGAAAGCAGCACAA
TAAAAAATCAATTGTGCATTAAGCCTTATTCACACTTAATGACCTTGCCG
CTGGATCGTCCATGACTTCTGTCAATCAAAGCGTAGCTAACAGGGCTCTA
AAGGTAGACCAAATCCACCAAACCCCCATGTTTGCAATCTGAGGTCAGAC
GTGTCACACCTCATAGCCATATTTCCGGCTCTACAGTCTCTAGAGTTCTT
ACAATTCAATCCCGTAAGATTCCCTATTCTCCCTGTAGGGAGGTATTCAA
AATCAATGCGTATTATGGGGATCTCAATGGCGGTGAGCTTTGCTGCAGAG
GTAACTCGAGGGTAGTCTCACAAATTTGGATACATGTGTATAGTTCTTGG
ATCTAGAAAACAGTGAGATCACGAGGGGAAAAAAATTAGGCGCCCGTGTT
AGAGGCAGAATATAGTTTAATCAAATAAATTACTCTCATTAGTTCTCGCC
TATAAATATCTCATGTAGAATTGAGCTTCTTGCTAGCTGCTACTAGTCAA
GTAAGAAGATACCCTATCTGTAAAAAAACCTCATCTAGCATCAATATGTG
AGACTCAAGTACAATAGAAATGAATTACAGTATTTGCCAATGGAATTTGC
AGAATCAGTAACAGTAGGATGAATGAGTATCTTGGGTGCTGTTACTACTA
GCTGATACAACAAGTATATTTGTCAGAATTCCATTCTGCTGAAGAATAAG
TTGCAAAGGTAATGCTCTCTTGTATGGATCCTTTCAAACATGTACAAATA
CAGTCAAACTTGGTCTTAGCAACCACTCAGGGACTGAGGAAAGATGGTTG
CTAAATGGAGGTAGTTGTTCCAAACAAGAGGGTATTTTTAACGTCATTAG
ATGGAACTGTTTAGATGTGACTTGTGACTGGTTTGTCTGTATGCAGTATT
GAGGCATGAGATGCGCATGTACAAGGGCTGCCATATTTCACAGAATCATG
AGATTTTAAAAATAGGAAAGTCTGATTAAAGAAGCATGGCAAGCAACAAT
ATTTTTGTTGCTGTATTCTGATCACCAAACTTGAACCATTTGCCTGAGCT
GCTGACTGTACTGGGATGTTTTAAAGAATTTCTATCATTATACGTAAACA
AGGTGGGGCCAATGTGAAACCCTTAATACTTGTCTTATTTCTGTGAGGTT
CGCATGGTCAATAACTGCTAGACATAGAAAAGACTGGAGTCTGTCAAGGG
AGGGGTTCCTCCAAAGGAGCGACAACACCCTCGAATGATGATGATTGCAT
TCCTAAGTCCTAACAAATTTGTCATTTCTACTTTTACATGCATAAATTAT
GTGTTTACATGTCTTTTTTTTTCAGAAGGATCCTATAACAGCCATGCCCA
GATGTACCTATGGATGAGTGTGGCAACATCAGGGATTGTCCTTCTGTTGG
TGTGTCTGTGTGTCCTGTGTGTCTGCAAGAGACTGGACTAATTGGAATGA
ACCTGAACTGATTAACAGGTACAACTGCCCTTAGGCATGTACATAGCACA
CCACCTTTGGAACAGTTACGGTCACTCCTACAGCGTTCATATCTAACCCC
AAGTGCTATATATTTACAGCCATATGATAAAAAGGCTGTCTTCTGACTTA
TCCTGGGTGCCATCAGATCACTACCGGGGCTCCTGCACTTGCTACCCTGA
AGTGTAGGAGCCCCGGTAGTAATCGGATGGCACCCAGGCTACTCCTGACT
GGCCAACCATTGTAAAGAGTTAGCAACGACTGACAAAACATTGATACATG
ATCTATGTTCCTCTTAATACTGAGACTTTTCCCCTTGTACAACATGGACA
CTCATGATATACTGTACGTCAGAATAATGCTGCCTTTTGCAAGGACATTT
TTGATTTGAAGCTACACACATAAGCTGTGTTGAGTAGAAATAGCCATAGC
TTGCATTATTGGTAACATCATTCACGACTTCACTTCAATATCTTCGACAG
ATTTTGTAGTCCTAAGGCCATTGAAACCACAGGCAACAGTAAGGAAATCT
ATCATGTCTGCCTGAACCAACAATTACTATAAACCTTAATGGAACCTAAG
GGGATAAGTGACCTACTTGTATATTGGACCCGTTTTGTACTGTGGTAGTT
GCAAAAATAGATGGTATGTACATGTACAGTATATTGGCTCAGTACATTGA
AAAATGAAAAATGTCCTTTTGAATACTACATGTAGTTTATCCAGATTATT
TTTTGCACATATATCCTCTCATTCCATGTTAAGATTCTAAGTGTATTTGG
TAGTATTAATGTAGTTTGTTAACACATAGCTGTTAAATGTGCTGTAAATA
CATGTATATATAGCCATATCAACTCTCCAATTCAACTTACAATATGTCAG
CTCCTGCATGTGATTTACATTAATAAAGGTATCAGAAATAGACAGTATAG
TCCAAAGTAATGCTCTTAATAAAAGAC Coding sequence (CDS) from alignment at Sc0000043:2042469..2048545- >transcript:BL70182_cuf1 ID=transcript:BL70182_cuf1|Name=transcript:BL70182_cuf1|organism=Branchiostoma lanceolatum|type=CDS|length=2100bp|location=Sequence derived from alignment at Sc0000043:2042469..2048545- (Branchiostoma lanceolatum)
ATGTCGAACTGCAGACCGCAGTTCTTTGTCTCATCAACGGGAAACTGCTT
CGTATTTTCACGAAGACCACATCACCATTCGGTGGCTGCTTTGGTTGTGA
TGGTCGCCAGTCTTCTGACACTGACAGATGCATTGAAGAGTGGCATGGGG
TTGTGTATCACCGGAGAGTGCCTTAACGGAGGTACTCCTCGGGAAGACGG
GACTTGTTTGTGCCCAGAAAACGTAAGGGGCACGTGTTGCGAAGCTATCA
ACAAGATGCCCTATGCCCCGCTGTTGTCTAGGACTATAGCCAAAGTGCCA
ATATGTGTGAAGTGCTTCCACGGTGGAACCAGGTACTACAGCAACGTCCA
CGCTGGATACAAGTGTCTCTGTCCGCCGTACCACGATGGGACCTGCTGCG
AAGTTCAAGAAGGATCCTATAACAGCCATGCCCAGATGTACCTATGGATG
AGTGTGGCAACATCAGGGATTGTCCTTCTGTTGGTGTGTCTGTGTGTCCT
GTGTGTCTGCAAGAGACTGGACTAAATGTCGAACTGCAGACCGCAGTTCT
TTGTCTCATCAACGGGAAACTGCTTCGTATTTTCACGAAGACCACATCAC
CATTCGGTGGCTGCTTTGGTTGTGATGGTCGCCAGTCTTCTGACACTGAC
AGATGCATTGAAGAGTGGCATGGGGTTGTGTATCACCGGAGAGTGCCTTA
ACGGAGGTACTCCTCGGGAAGACGGGACTTGTTTGTGCCCAGAAAACGTA
AGGGGCACGTGTTGCGAAGCTATCAACAAGATGCCCTATGCCCCGCTGTT
GTCTAGGACTATAGCCAAAGTGCCAATATGTGTGAAGTGCTTCCACGGTG
GAACCAGGTACTACAGCAACGTCCACGCTGGATACAAGTGTCTCTGTCCG
CCGTACCACGATGGGACCTGCTGCGAAGTTCAAGAAGGATCCTATAACAG
CCATGCCCAGATGTACCTATGGATGAGTGTGGCAACATCAGGGATTGTCC
TTCTGTTGGTGTGTCTGTGTGTCCTGTGTGTCTGCAAGAGACTGGACTAA
ATGTCGAACTGCAGACCGCAGTTCTTTGTCTCATCAACGGGAAACTGCTT
CGTATTTTCACGAAGACCACATCACCATTCGGTGGCTGCTTTGGTTGTGA
TGGTCGCCAGTCTTCTGACACTGACAGATGCATTGAAGAGTGGCATGGGG
TTGTGTATCACCGGAGAGTGCCTTAACGGAGGTACTCCTCGGGAAGACGG
GACTTGTTTGTGCCCAGAAAACGTAAGGGGCACGTGTTGCGAAGCTATCA
ACAAGATGCCCTATGCCCCGCTGTTGTCTAGGACTATAGCCAAAGTGCCA
ATATGTGTGAAGTGCTTCCACGGTGGAACCAGGTACTACAGCAACGTCCA
CGCTGGATACAAGTGTCTCTGTCCGCCGTACCACGATGGGACCTGCTGCG
AAGTTCAAGAAGGATCCTATAACAGCCATGCCCAGATGTACCTATGGATG
AGTGTGGCAACATCAGGGATTGTCCTTCTGTTGGTGTGTCTGTGTGTCCT
GTGTGTCTGCAAGAGACTGGACTAAATGTCGAACTGCAGACCGCAGTTCT
TTGTCTCATCAACGGGAAACTGCTTCGTATTTTCACGAAGACCACATCAC
CATTCGGTGGCTGCTTTGGTTGTGATGGTCGCCAGTCTTCTGACACTGAC
AGATGCATTGAAGAGTGGCATGGGGTTGTGTATCACCGGAGAGTGCCTTA
ACGGAGGTACTCCTCGGGAAGACGGGACTTGTTTGTGCCCAGAAAACGTA
AGGGGCACGTGTTGCGAAGCTATCAACAAGATGCCCTATGCCCCGCTGTT
GTCTAGGACTATAGCCAAAGTGCCAATATGTGTGAAGTGCTTCCACGGTG
GAACCAGGTACTACAGCAACGTCCACGCTGGATACAAGTGTCTCTGTCCG
CCGTACCACGATGGGACCTGCTGCGAAGTTCAAGAAGGATCCTATAACAG
CCATGCCCAGATGTACCTATGGATGAGTGTGGCAACATCAGGGATTGTCC
TTCTGTTGGTGTGTCTGTGTGTCCTGTGTGTCTGCAAGAGACTGGACTAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000043 | genome | Sc0000043:2042469..2048545 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL70182_cuf1 |
| Biotype | protein_coding |
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